Error in Julia while installing DifferentialEquations package - julia

I am starting with Julia and trying to install the packages. I am using version 1.5.0 and have Windows 10. However I am stacked on the following error:
Resolving package versions...
Cloning [bea87d4a-7f5b-5778-9afe-8cc45184846c] SuiteSparse_jll from https://github.com/JuliaBinaryWrappers/SuiteSparse_jll.jl.git
Installed SuiteSparse_jll ─ v5.4.0+9
Downloading artifact: SuiteSparse
Downloading artifact: SuiteSparse
ERROR: Unable to automatically install 'SuiteSparse' from 'C:\Users\username\.julia\packages\SuiteSparse_jll\CZHvV\Artifacts.toml'
Stacktrace:
[1] error(::String) at .\error.jl:33
[2] ensure_artifact_installed(::String, ::Dict{String,Any}, ::String; platform::Pkg.BinaryPlatforms.Platform, verbose::Bool, quiet_download::Bool) at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\Artifacts.jl:898
[3] ensure_all_artifacts_installed(::String; platform::Pkg.BinaryPlatforms.Platform, pkg_uuid::Nothing, include_lazy::Bool, verbose::Bool, quiet_download::Bool) at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\Artifacts.jl:962
[4] download_artifacts(::Pkg.Types.Context, ::Array{String,1}; platform::Pkg.BinaryPlatforms.Windows, verbose::Bool) at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\Operations.jl:656
[5] download_artifacts(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; platform::Pkg.BinaryPlatforms.Windows, verbose::Bool) at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\Operations.jl:635
[6] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Array{Base.UUID,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Windows) at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\Operations.jl:1134
[7] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Windows, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\API.jl:189
[8] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\API.jl:140
[9] #add#21 at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\API.jl:67 [inlined]
[10] add at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\API.jl:67 [inlined]
[11] #add#20 at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\API.jl:66 [inlined]
[12] add at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\API.jl:66 [inlined]
[13] add(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\API.jl:65
[14] add(::String) at D:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.5\Pkg\src\API.jl:65
[15] top-level scope at REPL[11]:1
[16] include_string(::Function, ::Module, ::String, ::String) at .\loading.jl:1088
Can anyone help?

Sounds like it is choking on installing some Artifacts for a dependency. This is probably the Artifacts.toml it is looking at:
https://github.com/JuliaBinaryWrappers/SuiteSparse_jll.jl/blob/main/Artifacts.toml
You can navigate into your C:/Users/<username>/.julia/packages/SuiteSparse_jll/ directory and see the exact one it is using.
And it is going into the last few lines of that file trying to get it to work on Windows 10 by downloading and unzipping that .tar.gz file at the end.
That file has in its bin folder the following dlls:
So it may be that the package isn't quite working for Julia 1.5 yet... you could try it on a previous version, like Julia 1.3.1.
It may be that you have restricted permissions on downloading or the unzipping failed, though I'd expect a different error. Or if you have a firewall that is blocking access to that file for some reason.
https://github.com/JuliaBinaryWrappers/SuiteSparse_jll.jl/releases/download/SuiteSparse-v5.4.1+3/SuiteSparse.v5.4.1.x86_64-w64-mingw32.tar.gz
It should unzip somewhere in C:/Users/<username>/.julia/artifacts/

Related

ERROR: The following package names could not be resolved: error installing package in Julia

I am trying to install julia Flux using pkg add and am getting the following error,
julia> Pkg.add("Flux")
ERROR: The following package names could not be resolved:
* Flux (not found in project, manifest or registry)
Please specify by known `name=uuid`.
Stacktrace:
[1] pkgerror(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/Types.jl:120
[2] #ensure_resolved#43(::Bool, ::Function, ::Pkg.Types.EnvCache, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/Types.jl:900
[3] #ensure_resolved at ./none:0 [inlined]
[4] #add_or_develop#15(::Symbol, ::Bool, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:64
[5] #add_or_develop at ./none:0 [inlined]
[6] #add_or_develop#14 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:34 [inlined]
[7] #add_or_develop at ./none:0 [inlined]
[8] #add_or_develop#11 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:33 [inlined]
[9] #add_or_develop at ./none:0 [inlined]
[10] #add_or_develop#10 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:32 [inlined]
[11] #add_or_develop at ./none:0 [inlined]
[12] #add#20 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:74 [inlined]
[13] add(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:74
[14] top-level scope at none:0
I tried using the ] add https://github.com/FluxML/Flux.jl but got the same error could anyone help please
I tries also adding other packages but similar error occurs and am thinking maybe it is an error with the julia env but am not sure so am not trying to mess with it
Basically, this type of error either means you have no internet connection (or are behind a firewall that is blocking connections by the package manager) or your .julia folder is corrupted.
In the second case the easiest thing to try is to delete .julia folder or set the system variable JULIA_DEPOT_PATH to point to some empty folder and restart Julia.

Error with CSV when trying install LaTeXStrings into Julia

I am new to Julia simply trying to install LaTeXStrings with Julia v1.5.0.
using DataFrames
using CSV
using Pkg
using Plots
Pkg.add("LaTeXStrings")
using LaTeXStrings
but I get the following error
Resolving package versions...
ERROR: LoadError: Unsatisfiable requirements detected for package CSV [336ed68f]:
CSV [336ed68f] log:
├─CSV [336ed68f] has no known versions!
└─restricted to versions * by an explicit requirement — no versions left
Stacktrace:
[1] check_constraints(::Pkg.Resolve.Graph) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Resolve/graphtype.jl:935
[2] Pkg.Resolve.Graph(::Dict{Base.UUID,Set{VersionNumber}}, ::Dict{Base.UUID,Dict{VersionNumber,Dict{String,Base.UUID}}}, ::Dict{Base.UUID,Dict{VersionNumber,Dict{String,Pkg.Types.VersionSpec}}}, ::Dict{Base.UUID,String}, ::Dict{Base.UUID,Pkg.Types.VersionSpec}, ::Dict{Base.UUID,Pkg.Resolve.Fixed}, ::Bool) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Resolve/graphtype.jl:362
[3] deps_graph(::Pkg.Types.Context, ::Dict{Base.UUID,String}, ::Dict{Base.UUID,Pkg.Types.VersionSpec}, ::Dict{Base.UUID,Pkg.Resolve.Fixed}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:495
[4] resolve_versions!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:367
[5] targeted_resolve at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1107 [inlined]
[6] tiered_resolve(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1093
[7] _resolve at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1113 [inlined]
[8] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Array{Base.UUID,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1128
[9] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:189
[10] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:140
[11] #add#21 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:67 [inlined]
[12] add at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:67 [inlined]
[13] #add#20 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:66 [inlined]
[14] add at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:66 [inlined]
[15] add(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:65
[16] add(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:65
[17] top-level scope at /home/nick/mesa-r11701/star/test_suite/rsp_Cepheid_grid/CMD.jl:5
[18] include(::Function, ::Module, ::String) at ./Base.jl:380
[19] include(::Module, ::String) at ./Base.jl:368
[20] exec_options(::Base.JLOptions) at ./client.jl:296
[21] _start() at ./client.jl:506
What am I missing here? I already have CSV installed and it is working perfectly.
In Windows 10, I followed these steps :
Open C:\Users\user\.julia\registries
Delete everything within this folder ( Don't worry they will be autocreated )
Open Julia terminal. At this point you should be at julia> prompt
Enter ] and press enter. At this point you should be at pkg prompt
add CSV
To go back to julia prompt press Ctrl + C.
This will resolve the issue. Please note deleting registry folder contents means all previous packages will be deleted. You need to add all packages one by one. However it is worthy.
Such problems are usually caused by cluttering the current environment, or having old versions of several packages.
If you're using base environment, create a new one and install packages there by by
using Pkg
pkg"activate ." # activates new environment
pkg"add DataFrames CSV Plots LaTeXStrings" # adds all packages using handy macro
using DataFrames, CSV, Plots, LaTeXStrings
if it does not help, delete Manifest.toml and upgrade all your packages.
If it's successful, following versions should be installed
using Pkg
pkg"st"
[336ed68f] CSV v0.7.7
[a93c6f00] DataFrames v0.21.6
[b964fa9f] LaTeXStrings v1.1.0
[91a5bcdd] Plots v1.5.8
[44cfe95a] Pkg
Also, if you already have clutterd the base environment, clean it up.
You can see it by
using Pkg
pkg"activate; st"
which prints list of packages installed in the base environment.

LoadError: InitError: While Precompiling in new Environment

I wanted to start using dedicated environments for all my julia projects, but activating the new environment and using packages (eg. Plots.jl) results in Precompiling that fails with the following error:
Activating environment at `~/Documents/baro/Project.toml`
julia> using Plots
[ Info: Precompiling Plots [91a5bcdd-55d7-5caf-9e0b-520d859cae80]
ERROR: LoadError: InitError: could not load library "/home/marius/.julia/artifacts/08ab4b2de494e1d61e581ab1fbd610b0b4d1876f/lib/libavdevice.so"
libx264.so.157: cannot open shared object file: No such file or directory
Stacktrace:
[1] dlopen(::String, ::UInt32; throw_error::Bool) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Libdl/src/Libdl.jl:109
[2] dlopen at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Libdl/src/Libdl.jl:109 [inlined] (repeats 2 times)
[3] __init__() at /home/marius/.julia/packages/FFMPEG_jll/tCUYA/src/wrappers/x86_64-linux-gnu.jl:231
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[5] _require_search_from_serialized(::Base.PkgId, ::String) at ./loading.jl:781
[6] _require(::Base.PkgId) at ./loading.jl:1006
[7] require(::Base.PkgId) at ./loading.jl:927
[8] require(::Module, ::Symbol) at ./loading.jl:922
[9] include(::Module, ::String) at ./Base.jl:377
[10] top-level scope at none:2
[11] eval at ./boot.jl:331 [inlined]
[12] eval(::Expr) at ./client.jl:449
[13] top-level scope at ./none:3
during initialization of module FFMPEG_jll
in expression starting at /home/marius/.julia/packages/FFMPEG/vocw2/src/FFMPEG.jl:3
ERROR: LoadError: Failed to precompile FFMPEG [c87230d0-a227-11e9-1b43-d7ebe4e7570a] to /home/marius/.julia/compiled/v1.4/FFMPEG/TGvga_eB360.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1272
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/marius/.julia/packages/Plots/LWw1t/src/Plots.jl:15
ERROR: Failed to precompile Plots [91a5bcdd-55d7-5caf-9e0b-520d859cae80] to /home/marius/.julia/compiled/v1.4/Plots/ld3vC_eB360.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1272
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
This also happens for some other packages like ControlSystems.
The julia version is 1.4.2 but I was able to reproduce this error with 1.5.0 and on a different computer with 1.3.1 on it. Both systems are runnning Ubuntu 20.04 LTS.
What I tried so far was:
Rebuilding the package Pkg.build()
Check that the file supposed to load exists (it existed)
Update libx264
Deleting all packages in .julia folder and and reinstalling everything using Pkg.instantiate()
Any help to get the packages running will be greatly appreciated as I really like the idea of having dedicated environments for every project. Also on 1.3.1 even after switching to the default environment the error is still occuring.
The issue seems to lay in the FFMPEG package.
The following solved the issue for me:
Remove FFMPEG. Then delete the folder which is given in the error message. In your case: "/home/marius/.julia/artifacts/08ab4b2de494e1d61e581ab1fbd610b0b4d1876f/lib/libavdevice.so"
Then add FFPEG again which results in a change in the Manifest.toml which does not happen if you just remove FFMPEG:
Updating `~/.julia/environments/v1.3/Manifest.toml`
[1270edf5] ↓ x264_jll v2020.7.14+0 ⇒ v2019.5.25+2
Try: using FFMPEG, Plots.
I was able to precompile Plots then.

Julia Pkg.clone()ERROR: Unsatisfiable requirements detected for package Stats [072d6d2a]:

I have Julia, Juno, and Atom installed in my computer. It works well. I was trying to use Pkg.clone() based on this link:https://github.com/uoa-ems-research/JEMSS.jl
I got the error message like the following:
julia> Pkg.clone("https://github.com/samridler/JEMSS.jl.git")
Updating git-repo `https://github.com/samridler/JEMSS.jl.git`
[ Info: Assigning UUID 24979329-2a3d-50cf-82e3-05af2f1830ac to JEMSS
[ Info: Path `/Users/jack/.julia/dev/JEMSS` exists and looks like the correct package, using existing path instead of cloning
Resolving package versions...
ERROR: Unsatisfiable requirements detected for package Stats [072d6d2a]:
Stats [072d6d2a] log:
├─possible versions are: [0.0.1, 0.1.0] or uninstalled
├─restricted to versions 0.0.0-* by JEMSS [24979329], leaving only versions [0.0.1, 0.1.0]
│ └─JEMSS [24979329] log:
│ ├─possible versions are: 0.0.0 or uninstalled
│ └─JEMSS [24979329] is fixed to version 0.0.0
└─restricted by julia compatibility requirements to versions: uninstalled — no versions left
Stacktrace:
[1] #propagate_constraints!#61(::Bool, ::Function, ::Pkg.GraphType.Graph, ::Set{Int64}) at /Users/osx/buildbot/slave/package_osx64/build/usr/share/julia/stdlib/v1.0/Pkg/src/GraphType.jl:1005
[2] propagate_constraints! at /Users/osx/buildbot/slave/package_osx64/build/usr/share/julia/stdlib/v1.0/Pkg/src/GraphType.jl:946 [inlined]
[3] #simplify_graph!#121(::Bool, ::Function, ::Pkg.GraphType.Graph, ::Set{Int64}) at /Users/osx/buildbot/slave/package_osx64/build/usr/share/julia/stdlib/v1.0/Pkg/src/GraphType.jl:1460
[4] simplify_graph! at /Users/osx/buildbot/slave/package_osx64/build/usr/share/julia/stdlib/v1.0/Pkg/src/GraphType.jl:1460 [inlined]
[5] macro expansion at ./logging.jl:317 [inlined]
[6] resolve_versions!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Nothing) at /Users/osx/buildbot/slave/package_osx64/build/usr/share/julia/stdlib/v1.0/Pkg/src/Operations.jl:353
[7] resolve_versions! at /Users/osx/buildbot/slave/package_osx64/build/usr/share/julia/stdlib/v1.0/Pkg/src/Operations.jl:316 [inlined]
[8] #add_or_develop#62(::Array{Base.UUID,1}, ::Symbol, ::Function, ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /Users/osx/buildbot/slave/package_osx64/build/usr/share/julia/stdlib/v1.0/Pkg/src/Operations.jl:1201
[9] #add_or_develop at ./none:0 [inlined]
[10] #add_or_develop#13(::Symbol, ::Bool, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /Users/osx/buildbot/slave/package_osx64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:64
[11] #add_or_develop at ./none:0 [inlined]
[12] #develop#19 at /Users/osx/buildbot/slave/package_osx64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:70 [inlined]
[13] develop at /Users/osx/buildbot/slave/package_osx64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:70 [inlined]
[14] macro expansion at ./logging.jl:308 [inlined]
[15] clone(::String, ::String) at /Users/osx/buildbot/slave/package_osx64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:468 (repeats 2 times)
[16] top-level scope at none:0
So, it looks like I need to clear/delete the file located at. ./Users/jack/.julia/dev/JEMSS and try this again, right? Maybe because I cloned this file more than once I guess? Is there a command I can use?
This is because the Stats package is not compatible with your julia versions, which looks like it is 0.7 or 1.0 based on the messages. Just rm the package. For now you'll have to load the JuliaStats packages manually.

Unable to Install packages for Julia 0.7 in Fedora 28 due to ERROR: Unsatisfiable requirements detected

I recently updated my Fedora version from 25 to 28 and with it updated Julia from 0.6 to 0.7.0-alpha.99.
I am now trying to add packages but keep getting the same error:
Pkg.add("PyPlot")
Updating registry at `~/.julia/registries/Uncurated`
Updating git-repo `https://github.com/JuliaRegistries/Uncurated.git`
Resolving package versions...
ERROR: Unsatisfiable requirements detected for package (unknown) [10745b16]:
(unknown) [10745b16] log:
├─(unknown) [10745b16] has no known versions!
└─found to have no compatible versions left with Distributions [31c24e10]
└─Distributions [31c24e10] log:
├─possible versions are: [0.1.0-0.1.4, 0.2.0-0.2.13, 0.3.0, 0.6.4-0.6.7, 0.7.0-0.7.6, 0.8.0-0.8.10, 0.9.0, 0.10.0-0.10.2, 0.11.0-0.11.1, 0.12.0-0.12.5, 0.13.0, 0.14.0-0.14.2, 0.15.0, 0.16.0-0.16.2] or uninstalled
└─restricted to versions 0.16.2 by an explicit requirement, leaving only versions 0.16.2
Stacktrace:
[1] #propagate_constraints!#61(::Bool, ::Function, ::Pkg.GraphType.Graph, ::Set{Int64}) at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/GraphType.jl:1005
[2] propagate_constraints! at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/GraphType.jl:946 [inlined]
[3] #simplify_graph!#121(::Bool, ::Function, ::Pkg.GraphType.Graph, ::Set{Int64}) at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/GraphType.jl:1460
[4] simplify_graph! at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/GraphType.jl:1460 [inlined]
[5] resolve_versions!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/Operations.jl:291
[6] #add_or_develop#52(::Array{Base.UUID,1}, ::Function, ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/Operations.jl:973
[7] #add_or_develop at ./none:0 [inlined]
[8] #add_or_develop#8(::Symbol, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/API.jl:39
[9] #add_or_develop at ./none:0 [inlined]
[10] #add_or_develop#7 at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/API.jl:24 [inlined]
[11] #add_or_develop at ./none:0 [inlined]
[12] #add_or_develop#6 at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/API.jl:23 [inlined]
[13] #add_or_develop at ./none:0 [inlined]
[14] #add_or_develop#5 at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/API.jl:22 [inlined]
[15] #add_or_develop at ./none:0 [inlined]
[16] #add#9 at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/API.jl:44 [inlined]
[17] add(::String) at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/Pkg/src/API.jl:44
[18] top-level scope at none:0
[19] macro expansion at /builddir/build/BUILD/julia/build/usr/share/julia/stdlib/v0.7/REPL/src/REPL.jl:116 [inlined]
[20] (::getfield(REPL, Symbol("##28#29")){REPL.REPLBackend})() at ./task.jl:257
The same thing happens with other packages (I have tried IJulia, Conda, Distributions).
You mention that you upgraded to 0.7.0-alpha.99. There is a stable release for 0.7.0 which you should use instead of an alpha version. You can find it on https://julialang.org/downloads/ under "Previous stable release (v0.7.0)".
In general, as Julia is changing at a fast pace you should always use the binaries from julialang.org instead of the binaries in your OS's package manager as they almost certainly won't be up to date (as in your case).
On a side note, from Julia 0.7 on the way to add packages has slightly changed. See my post here: How to install a package in Julia 1.0 (UndefVarError: Pkg not defined)

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