I'm trying to install devtools for R in a MacBook (OS 13.0)
Problem is that it doesn't have dependency pkgdown:
ERROR: dependency ‘pkgdown’ is not available for package ‘devtools’
* removing ‘/opt/homebrew/lib/R/4.2/site-library/devtools’
nor ragg (when I try to install pkgdown)
<stdin>:1:10: fatal error: 'hb-ft.h' file not found
#include <hb-ft.h>
^~~~~~~~~
1 error generated.
--------------------------------------------------------------------
ERROR: configuration failed for package ‘textshaping’
ERROR: dependency ‘ragg’ is not available for package ‘pkgdown’
Trying to install textshaping didn't work either, giving:
#include <hb-ft.h>
^~~~~~~~~
1 error generated.
--------------------------------------------------------------------
ERROR: configuration failed for package ‘textshaping’
* removing ‘/opt/homebrew/lib/R/4.2/site-library/textshaping’
Never mind I solved it with:
brew install harfbuzz
brew install fribidi
In addition (for future reference) you also need:
brew install libgit2
and then
install.packages("usethis", verbose=TRUE)
Related
I'm trying to install the package 'semPlot' in RStudio, and keep getting errors:
** testing if installed package can be loaded from temporary location
*** arch - i386
Error: package or namespace load failed for 'rockchalk' in library.dynam(lib, package, package.lib):
DLL 'zip' not found: maybe not installed for this architecture?
Error: loading failed
Execution halted
*** arch - x64
ERROR: loading failed for 'i386'
* removing 'C:/Documents/R/win-library/4.0/rockchalk'
Warning in install.packages :
installation of package ‘rockchalk’ had non-zero exit status
ERROR: failed to lock directory 'C:/Documents/R/win-library/4.0' for modifying
Try removing 'C:/Documents/R/win-library/4.0/00LOCK-OpenMx'
Warning in install.packages :
installation of package ‘OpenMx’ had non-zero exit status
ERROR: dependencies 'rockchalk', 'OpenMx' are not available for package 'semPlot'
* removing 'C:/Documents/R/win-library/4.0/semPlot'
Warning in install.packages :
installation of package ‘semPlot’ had non-zero exit status
The downloaded source packages are in
‘C:\AppData\Local\Temp\RtmpE9qK0s\downloaded_packages’
I already installed the package ‘rockchalk’, but it didn't help.
The first time I tried to install 'semPlot' there was an almost endless process which also ended with an error.
You could use the install_github function to install R packages hosted on GitHub from the devtools package. Here is a reproducible example:
devtools::install_github('SachaEpskamp/semPlot')
library(semPlot)
Created on 2022-11-14 with reprex v2.0.2
I solved it by uninstalling R and RStudio, and then installing them, and googling a small problem that came up with tydiverse.
I am struggling to install keras on my Rstudio version 2021.09.2 Build 382 (R version 3.6.0 (2019-04-26)) on Linux Centos 7. I am having this error message:
ERROR: compilation failed for package ‘RcppTOML’
* removing ‘/usr/lib64/R/library/RcppTOML’
ERROR: dependency ‘RcppTOML’ is not available for package ‘reticulate’
* removing ‘/usr/lib64/R/library/reticulate’
ERROR: dependency ‘reticulate’ is not available for package ‘tfautograph’
* removing ‘/usr/lib64/R/library/tfautograph’
ERROR: dependency ‘reticulate’ is not available for package ‘tfruns’
* removing ‘/usr/lib64/R/library/tfruns’
ERROR: dependencies ‘reticulate’, ‘tfruns’, ‘tfautograph’ are not available for package ‘tensorflow’
* removing ‘/usr/lib64/R/library/tensorflow’
ERROR: dependencies ‘reticulate’, ‘tensorflow’, ‘tfruns’ are not available for package ‘keras’
* removing ‘/usr/lib64/R/library/keras’
I tried to install manually directly from the tar, but I still have the same error.
1: In install.packages("keras") :
installation of package ‘RcppTOML’ had non-zero exit status
2: In install.packages("keras") :
installation of package ‘reticulate’ had non-zero exit status
3: In install.packages("keras") :
installation of package ‘tfautograph’ had non-zero exit status
4: In install.packages("keras") :
installation of package ‘tfruns’ had non-zero exit status
5: In install.packages("keras") :
installation of package ‘tensorflow’ had non-zero exit status
6: In install.packages("keras") :
installation of package ‘keras’ had non-zero exit status
Any idea how to solve it?
Thanks.
I finally understood, there is a bug on CentOS 7: RcppTOML fails to compile with g++ 4.8.5 (20150623), but installs with g++ 5.3.1 (20160406) from scl-devtoolset-4.
sudo yum install centos-release-scl
sudo yum install devtoolset-7-gcc*
scl enable devtoolset-7 bash
These lines fixed the issue
As described in the comments the older version of RcppTOML also works; This is a lighter stack then the accepted answer.
install.packages("devtools")
require(devtools)
install_version("RcppTOML", version = "0.1.3", repos = "http://cran.us.r-project.org")
To install an older version the easiest way is to use devtools.
I'm installing Shiny Server for R Language in CentOS 6.5 using:
install.packages('shiny', repos='https://cran.rstudio.com/')
And get:
ERROR: compilation failed for package ‘later’
* removing ‘/usr/lib64/R/library/later’
ERROR: dependency ‘later’ is not available for package ‘promises’
* removing ‘/usr/lib64/R/library/promises’
Looking in the Internet I found that I need devtools to install it from git hub:
https://github.com/r-lib/later/issues/78
Using:
install.packages('devtools', repos='https://cran.rstudio.com/')
But get the same error:
ERROR: dependency ‘later’ is not available for package ‘promises’
How to solve this in order to install shiny?
The problem was solved upgrading the C++ compiler in CentOS.
This guide was useful for the process:
https://edwards.sdsu.edu/research/c11-on-centos-6/
I'm trying to install the 'agricolae' package on R, but I get an error saying
configure: error: libproj not found in standard or given locations.
ERROR: configuration failed for package ‘sf’
* removing ‘/R/x86_64-pc-linux-gnu-library/3.6/sf’
Warning in install.packages :
installation of package ‘sf’ had non-zero exit status
ERROR: dependency ‘sf’ is not available for package ‘spdep’
* removing ‘/R/x86_64-pc-linux-gnu-library/3.6/spdep’
Warning in install.packages :
installation of package ‘spdep’ had non-zero exit status
ERROR: dependency ‘spdep’ is not available for package ‘agricolae’
* removing ‘/R/x86_64-pc-linux-gnu-library/3.6/agricolae’
Warning in install.packages :
installation of package ‘agricolae’ had non-zero exit status
I recently upgraded to Ubuntu 18.04.2 and R version 3.6.0 (2019-04-26) -- "Planting of a Tree" and that's when the problems started.
When I do
$ sudo apt-get install -y libproj-dev
I get:
libproj-dev is already the newest version (5.2.0-1~bionic0).
The error says that package 'sf' is not available for dependency 'spdep'. So you should be attempting to install pkg 'sf'. (I'm on the same OS as you and pkg:agricolae installed without problem just now. I have a more complete set of spatial R and system packages than you do.)
Edit: There have been reports that it was necessary in addressing this problem to create an environment link to the location of your libraries:
$ export LD_LIBRARY_PATH=/lib:/usr/lib:/usr/local/lib
(From: https://stat.ethz.ch/pipermail/r-sig-geo/2018-August/026740.html which in turn linked to https://gis.stackexchange.com/questions/157059/repairing-broken-gdal-and-proj-4-on-ubuntu, which has so further debugging options mentioned.)
Good morning,
I am trying to install the R package fdaPDE from GitHub repository "NegriLuca/fdaPDE-manifold" via RStudio1.4, using the package devtools. My OS is Windows 10, I am using Rtools35 and R3.5.1. The package has to be compiled from source. I have typed the following:
install.packages('devtools')
library(devtools)
install_github("NegriLuca/fdaPDE-manifold")
and got the following:
[… I omit the long compilation part …]
** building package indices
** testing if installed package can be loaded
*** arch - i386
Error: package or namespace load failed for 'fdaPDE'inlibrary.dynam(lib, package, package.lib):
DLL 'fdaPDE' not found: maybe not installed for this architecture?
Errore: loading failed
Esecuzione interrotta
*** arch - x64
Error: package or namespace load failed for 'fdaPDE' in library.dynam(lib, package, package.lib):
DLL 'fdaPDE' not found: maybe not installed for this architecture?
Errore: loading failed
Esecuzione interrotta
ERROR: loading failed for 'i386', 'x64'
* removing 'C:/Users/Gianmaria/Documents/R/win-library/3.5/fdaPDE'
In R CMD INSTALL
Error in i.p(...) :
(converted from warning) installation of package ‘C:/Users/GIANMA~1/AppData/Local/Temp/RtmpwDxgqJ/file466865be7d8c/fdaPDE_0.1-5.tar.gz’ had non-zero exit status
What can I do to fix this?
I have finally managed to install the package. What I did was the following:
-REMOVE previous installations (I had supposed that to be done automatically but it was not, and I had an older version installed) by typing in Rstudio
remove.packages("fdaPDE")
-In Windows cmd, after having downloaded the code from Github, type
"Path/to/Rfolder/R" CMD BUILD <path to folder fdaPDE>
"Path/to/Rfolder/R" CMD INSTALL -l <path name of the R library tree> <path name of the package to be installed>
Hope that this may be useful for other people who faces similar errors.