I was working on an assignment that requires installing a number of packages (including rJava and qdap), and I was sucessful at that. But when I installed those projects onto RLibrary, I couldn't install Java and qdap.
I got the following errors:
> library(qdap)
Error: package or namespace load failed for 'qdap':
.onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(jli, FALSE)
error: unable to load shared object '/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib':
dlopen(/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib, 0x000A): tried: '/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib' (mach-o file, but is an incompatible architecture (have (x86_64), need (arm64e)))
> library(rJava)
Error: package or namespace load failed for 'rJava':
.onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(jli, FALSE)
error: unable to load shared object '/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib':
dlopen(/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib, 0x000A): tried: '/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib' (mach-o file, but is an incompatible architecture (have (x86_64), need (arm64e)))
I then tried to install Java, Java JDK, and pkgname, but got the following errors:
Warning in install.packages :
package 'Java JDK' is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Warning in install.packages :
package 'pkgname' is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
I'm not sure why I am getting these errors. I'm using RStudio Version 2022.12.0+353 (2022.12.0+353), and MacOS Monterey 12.5.
Related
I'm not too familiar with R and are using it for Uni, and we need this asreml package for one of our classes. When I try installing it this error comes up:
Error: package or namespace load failed for ‘asreml’:
.onLoad failed in loadNamespace() for 'asreml', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-asreml/00new/asreml/libs/libvsninet.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-asreml/00new/asreml/libs/libvsninet.so, 0x0006): tried: '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-asreml/00new/asreml/libs/libvsninet.so' (mach-o file, but is an incompatible architecture (have (x86_64), need (arm64e)))
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/asreml’
Warning in install.packages :
installation of package ‘/Users/Cami/Downloads/asreml-4.1.0.176-macOS-10.13.2-R4.2.tar.gz’ had non-zero exit status
I tried installing it on R both with a full path to the file and with a working directory set up. I've also tried to install it directly through the computer terminal, however, the same error comes up. A tutor in class has also tried to open a library for the package through the terminal on my laptop and it also didn't work. Neither of us are sure of what 'libvsninet.so' means. I've also tried to disinstall and reinstall both R and RStudio, but the result is the same.
I'm trying to install the Homals package - library(homals), but keep getting this error message:
library(homals)
Error : .onLoad failed in loadNamespace() for 'rgl', details: call:
dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared
object
'/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rgl/libs/rgl.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rgl/libs/rgl.so,
6): Library not loaded: /opt/X11/lib/libGLU.1.dylib Referenced from:
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rgl/libs/rgl.so
Reason: image not found Error: package or namespace load failed for
‘homals’
I have a couple of my colleagues to run the same code, the same thing happens. I have re-install R studio to the newest version.
install.packages("rgl")
install.packages("homals")
library(homals)
Any solutions for this? thank you.
I was able to successfully install on both Windows and Mac. I believe the root cause here is that you have R version 3.3 installed when you require at least v3.5.3 as per below:
library(homals)
Warning message:
package ‘homals’ was built under R version 3.5.3
When I want to install the xlsx package, I get this error :
Loading required package: rJava
Error : .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
In addition: Warning message:
package ‘rJava’ was built under R version 3.3.3
Error: package ‘rJava’ could not be loaded
So I tried reinstalling rJava, but I get this :
Error : .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
In addition: Warning message:
package ‘rJava’ was built under R version 3.3.3
Error: package or namespace load failed for ‘rJava’
Do you guys have any simple solution to this ? I am not very familiar with R, and I just need it to bootstrap some data.
I had the same error recently (R Error: JAVA_HOME cannot be determined from the Registry). I found the solution here. In brief, Joachim Schork identified the problem as not the xlsx package but rather the rjava package. He explained that the problem usually is, as hartmut said, running a 64 bit version of R and a 32 bit version of Java. To resolve the problem according to his recommendation, you need to download and install the 64 bit version of Java. In my case, the solution included installing Java on my machine as it was never installed previously.
Im trying to install the xlsx package. Installing works fine but when i load the library I get the following error:
> require(xlsx)
Loading required package: xlsx
Loading required package: rJava
Error : .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: No CurrentVersion entry in Software/JavaSoft registry! Try re- installing Java and make sure R and Java have matching architectures.
In addition: Warning messages:
1: package ‘xlsx’ was built under R version 3.2.3
2: package ‘rJava’ was built under R version 3.2.3
Failed with error: ‘package ‘rJava’ could not be loaded’
I googled around and say that installing the right version of Java might be the issue. However, when I downloaded the newest version and started a new r-session I still get the same issue.
Are there more people experiencing this issue? And some quick fix?
I am using Linux and when I update R or Java to use the rJava library (needed by xlsx) I need to run this commands form a shell (outside the R session)
sudo su -
R CMD javareconf
I hope this helps.
I am using Linux- fedora 14 64 bit machine. While installing some of R packages , eg : DEGseq and sqldf , I am facing this error. I manually install all tcl and tk devel and core libraries using yum but the problem still persisting.
The error i am encountering while installing packages:
Warning: S3 methods ‘$.tclvar’, ‘$<-.tclvar’, ‘as.character.tclObj’, ‘as.character.tclVar’, ‘as.double.tclObj’, ‘as.integer.tclObj’, ‘as.logical.tclObj’, ‘as.raw.tclObj’, ‘print.tclObj’, ‘[[.tclArray’, ‘[[<-.tclArray’, ‘$.tclArray’, ‘$<-.tclArray’, ‘names.tclArray’, ‘names<-.tclArray’, ‘length.tclArray’, ‘length<-.tclArray’, ‘tclObj.tclVar’, ‘tclObj<-.tclVar’, ‘tclvalue.default’, ‘tclvalue.tclObj’, ‘tclvalue.tclVar’, ‘tclvalue<-.default’, ‘tclvalue<-.tclVar’, ‘close.tkProgressBar’ were declared in NAMESPACE but not found
Error : .onLoad failed in loadNamespace() for 'tcltk', details:
call: fun(libname, pkgname)
error: Tcl/Tk support is not available on this system
Error : package/namespace load failed for ‘tcltk’
Error : unable to load R code in package ‘gsubfn’
ERROR: lazy loading failed for package ‘gsubfn’
* removing ‘/home/xuserL/R/x86_64-unknown-linux-gnu-library/2.15/gsubfn’
ERROR: dependency ‘gsubfn’ is not available for package ‘sqldf’
* removing ‘/home/xuser/R/x86_64-unknown-linux-gnu-library/2.15/sqldf’
I am unable to find the solution even after googling about this error.
Please tell me the set of steps i need to follow in order to sort out this problem?
Thanks in advance :)