I have a system writing data to an sqlite file. I had everything operational under CentOS 8. After upgrading the system to Rocky Linux 9 I see this error when running a commit command: DBD::SQLite::db commit failed: disk I/O error
I have checked file permissions, disk space, SMART readings, everything disk related that I can think of but without success.
Has anyone encountered this error before? What could I try to fix it?
The problem turned out to be a missing Perl module (LWP::https) that was causing DBD::SQLite not to get the data it wanted. Apparently, DBD::SQLite says Disk I/O error for that case.
Related
I'm having trouble getting R to work on SQL Server 2017 on one server (I've successfully installed it on about 8 other servers). I've already installed that latest cumulative update.
When I execute a stored procedure that runs a simple hello world R script, I can see that LaunchPad.exe and rterm.exe are both running. After 60 seconds, however, I get the following error:
Msg 39012, Level 16, State 1, Line 0
Unable to communicate with the runtime for 'R' script. Please check the requirements of 'R' runtime.
STDERR message(s) from external script: Fatal error: creation of tmpfile failed -- set TMPDIR suitably?
This is the script that fails:
EXEC sp_execute_external_script
#language =N'R', #script=N'print("hello")';
Any ideas on what I need to do to resolve this error?
The problem was that Named Pipes wasn't enabled for SQL Server. Enabling that, and restarting the services solved my issue.
My assumption is that you applied the CU after the installation of Machine Learning Services? If so, the CU somehow messes up the folder permissions.
I wrote a blog post about how to fix it here. The blog post is about CU7, but it should apply to any CU.
I do not guarantee that it works, as I have seen other issues when the ML Services stop working, for those cases what fixes it is to do a repair of the SQL installation.
I am running owncloudcmd to sync files from a local* path to an ownCloud/Nextcloud server, all running Debian 8. However it fails with the error:
[5] csync_statedb_query sqlite3_compile error: disk I/O error - on
query PRAGMA quick_check; [6] csync_statedb_load ERR: sqlite3
integrity check failed - bail out: disk I/O error. #### ERROR during
csync_update : "CSync failed to load the journal file. The journal
file is corrupted."
I am not very familiar with csync or sqlite so I am a bit in the dark and although I can find talk of this issue through googling, I can't find a fix. The data in this case can be dumped to start over so I'm happy to flush any database or anything else. I've trying removing the created csync and journal files assuming one of them was corrupted but it doesn't seem to change anything.
I have read talk about changing PRAGMA settings to ignore the error (or check) but I can't see how this is implemented either.
Is anyone able to show me how to clear out the corruption?
*the local file is a mounted path to an AWS S3 bucket but I think this is irrelevant because it is working on other systems fine.
I'm experiencing a disk I/O error during a query on a SQL database. I have several large (95gb) db with the same schema, and am trying to run the same query on all of them. Two run fine, returning ~28,000,000 results; one hits a 'Disk I/O error', both when run via SQLalchemy and command line.
If I limit the query to return ~10,000,000 results, I don't get the error- but I need the full output as these are photons from a large physics simulation.
The full error message in SQLalchemy is:
Traceback (most recent call last):
File "/Users/swm1n12/anaconda/lib/python3.5/site-packages/sqlalchemy/engine/result.py", line 1120, in fetchall
l = self.process_rows(self._fetchall_impl())
File "/Users/swm1n12/anaconda/lib/python3.5/site-packages/sqlalchemy/engine/result.py", line 1071, in _fetchall_impl
return self.cursor.fetchall()
sqlite3.OperationalError: disk I/O error
And for sqlite3 on the command line:
Error: disk I/O error
Can anyone tell me how I'd be able to figure out what's going wrong?
(I'm aware that for DB of this size, SQLite is not a great choice- they turned out to be bigger than I expected and ~academic publishing pressures~ means retooling SQL version and rerunning the code is not practical)
In the sqlite3 command-line shell, you can use .log stderr to see the OS errors.
But "disk I/O error" means that there is an error on your disk. Throw it away, and restore the database from the backup.
I am currently trying to use pkgmk on a Solaris10-x86 machine. When I run the command
pkgmk -o -b $(HOME)/solbuild/pkg_solaris
it returns this error:
## Building pkgmap from package prototype file.
pkgmk: ERROR: memory allocation failure
## Packaging was not successful.
My first thought was that this is an out of free memory error, however I am not sure that it could be. I have close to a gigabyte free in the / partition and 12 gigabytes free in the $(HOME) partition.
Any help would be greatly appreciated.
I saw this error when /var was full.
Deleting some file from /var resolved this problem.
When trying to commit to my SVN repository, I got the following error:
Working copy 'Z:\prace-pj\projects\other\CopyRT' locked.
So I run the clean up command and then the commit succeeded, but at the end of the response message, there was the following error:
Error bumping revisions post-commit (details follow):
disk I/O error, executing statement 'RELEASE s11'
Now when I try to e.g. update the repository, it says that it is stil locked. When I clean up and try to update again, I get an error like this:
disk I/O error, executing statement 'RELEASE s2'
sqlite: disk I/O error
What should I do to fix this?
For others reference, I just had this same error and found that one of my log files was taking up all my space (and could not write to the HDD because there was no free space).
Run (to make sure you have enough disk space)
df -h
Then I just needed to run:
svn cleanup
This resolved the error for me.
have you tried:
svn unlock --force path/to/workingcopy
? Seems it can be pointed at a url if the problem is in the repository itself... I've only used an unlock operation via the tortoise gui before, but I assume it just wraps the svn command anyway.
hope that helps