So some reason I am able to knit my R markdown file into a Word doc. I don't know what to do or how to get over it. I keep getting the message in the picture about the code also listed there.
Related
My R markdown file is working fine, until I add a particular plot, then it will not knit and displays the following error:
! LaTeX Error: File `filename_files/figure-latex/unnamed-chunk-2-1' not found.
When I remove the plot, the file knits, when i include it, it doesn't knit. Here is the code I'm using for the plot:
```{r echo=FALSE}
plot(x=variable1,y=variable2,main="plot title")
```
I'm at a loss as to why this isn't working, when I've got other plots in the document that are displaying fine and are knitting in the pdf.
Rather frustratingly, I have managed to get around the issue by copying all of the text into a new document, and then trying to knit, and it worked straight away... However, after a while, the same issue kept occurring, this time with a different plot. A further workaround seemed to be rebooting the laptop. Again, I'm not entirely sure what is causing the issue, but it was occurring intermittently and without warning.
Recently I was doing a course in Coursera and faced the problem while doing R markdown. When I run the code in the console it works just fine however, when I knit it, the rmarkdown only show text in the code chunk as below.
I run this in console and it work just fine:
But when i knit the code appear as text:
When I hit the green arrow it appears like there are some error going on:
The bottom screenshot you provided is not an R code chunk. It does not have the proper header. R code chunks in an R markdown file must be formatted like this:
```{r}
R code goes here
```
I'm working on a document with Rmarkdown on RStudio. In that rmd I use shiny runtime and my question is if I could generate some file with that document to open it outside RStudio, just like rmd without shiny runtime which generates an .html.
I was searching but I found nothing, does anyone know some tool to do that?
Many thanks!
Xevi
When I knit PDF on RStudio. It DOES NOT match what is in my Rmd file after source of the .Rmd. This has happened every time I tried to Knit PDF. How can I get example what is in my .Rmd into Knit PDF? I've tried clearing cache and restarting RStudio but this inconsistency is still happening...
You need to set.seed() at instance where you are generating random data if you are generating any.
Try to clean your environment and rerun and assess results
Try to set.seed at the top of the code and rerun.
Why can the chunk be run interactively but there is an error when I try to knit the file? When I run each chunk, there is no error, but when I knit it, it is stopped by an error.
The usual reason for a difference between the interactive result and the knitted document result is that you are referring to objects that aren't defined in the document. Interactive code can see your global environment, knitted code can't.