Unable to load an installed package in R - r

While trying to install and load the package Hmisc in RStudio, I ran into an error. Upon inspection, it turned out to originate from ggplot2. I can replicate the error on my machine as follows:
> install.packages("ggplot2", dependencies=TRUE)
# see bottom of this post for the full log of this command.
> library(ggplot2)
Error in library(ggplot2) : there is no package called 'ggplot2'
I have reinstalled RStudio and its packages, but without success. Also, some other packages (such as AER) do work properly.
Any advice on how to solve this issue would be greatly appreciated.
Full log of install.packages("ggplot2"):
Installing package into <some library>
(as ‘lib’ is unspecified)
also installing the dependencies ‘cli’, ‘rlang’, ‘lifecycle’, ‘scales’
There are binary versions available but the source versions are later:
binary source needs_compilation
cli 3.2.0 3.4.1 TRUE
rlang 1.0.2 1.0.6 TRUE
lifecycle 1.0.1 1.0.3 FALSE
scales 1.2.0 1.2.1 FALSE
ggplot2 3.3.5 3.3.6 FALSE
Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/cli_3.2.0.zip'
Content type 'application/zip' length 1255499 bytes (1.2 MB)
downloaded 1.2 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/rlang_1.0.2.zip'
Content type 'application/zip' length 1718546 bytes (1.6 MB)
downloaded 1.6 MB
package ‘cli’ successfully unpacked and MD5 sums checked
package ‘rlang’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
<some library>
installing the source packages ‘lifecycle’, ‘scales’, ‘ggplot2’
trying URL 'https://cran.rstudio.com/src/contrib/lifecycle_1.0.3.tar.gz'
Content type 'application/x-gzip' length 106854 bytes (104 KB)
downloaded 104 KB
trying URL 'https://cran.rstudio.com/src/contrib/scales_1.2.1.tar.gz'
Content type 'application/x-gzip' length 270609 bytes (264 KB)
downloaded 264 KB
trying URL 'https://cran.rstudio.com/src/contrib/ggplot2_3.3.6.tar.gz'
Content type 'application/x-gzip' length 3061989 bytes (2.9 MB)
downloaded 2.9 MB
* installing *source* package 'lifecycle' ...
** package 'lifecycle' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 1.0.2 is being loaded, but >= 1.0.6 is required
Calls: <Anonymous> ... withCallingHandlers -> loadNamespace -> namespaceImport -> loadNamespace
Execution halted
ERROR: lazy loading failed for package 'lifecycle'
* removing <some library>
Warning in install.packages :
installation of package ‘lifecycle’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'scales'
* removing <some library>
Warning in install.packages :
installation of package ‘scales’ had non-zero exit status
ERROR: dependency 'scales' is not available for package 'ggplot2'
* removing <some library>
Warning in install.packages :
installation of package ‘ggplot2’ had non-zero exit status
The downloaded source packages are in
<some library>
After being advised to install rlang, I first ran remove.packages(rlang), and then install.packages("rlang"), type="source"). However, when I then run library(rlang), I get the error Error in library(rlang) : there is no package called ‘rlang’. Here is the output of install.packages("rlang"):
Installing package into < some library >
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/rlang_1.0.6.tar.gz'
Content type 'application/x-gzip' length 742508 bytes (725 KB)
downloaded 725 KB
* installing *source* package 'rlang' ...
** package 'rlang' successfully unpacked and MD5 sums checked
** using staged installation
** libs
*** arch - i386
Warning in system(cmd) : 'make' not found
ERROR: compilation failed for package 'rlang'
* removing < some library >
Warning in install.packages :
installation of package ‘rlang’ had non-zero exit status
The downloaded source packages are in
< some library >

Related

I cannot install "photosynthesis" package

For some reason, I dont seem to be able to install the package.
I tried to install it today but I get a couple of errors including the final "Warning in install.packages :
installation of package ‘photosynthesis’ had non-zero exit status"
I have installed other packages and that one is the only one that seems to have a problem.
Some colleagues have been able to install it so I do not know what I am doing wrong
Some help would be really appreciated it
Edit: Full error message
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/rlibs/4.0.5’
(as ‘lib’ is unspecified)
also installing the dependencies ‘cli’, ‘lifecycle’, ‘rlang’, ‘vctrs’, ‘ggplot2’
There are binary versions available but the source versions are later:
binary source needs_compilation
cli 3.2.0 3.6.0 TRUE
lifecycle 1.0.1 1.0.3 FALSE
rlang 1.0.2 1.0.6 TRUE
vctrs 0.4.1 0.5.2 TRUE
ggplot2 3.3.5 3.4.0 FALSE
Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/cli_3.2.0.zip'
Content type 'application/zip' length 1255499 bytes (1.2 MB)
downloaded 1.2 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/rlang_1.0.2.zip'
Content type 'application/zip' length 1718546 bytes (1.6 MB)
downloaded 1.6 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/vctrs_0.4.1.zip'
Content type 'application/zip' length 1569486 bytes (1.5 MB)
downloaded 1.5 MB
package ‘cli’ successfully unpacked and MD5 sums checked
package ‘rlang’ successfully unpacked and MD5 sums checked
package ‘vctrs’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\quesadaa\AppData\Local\Temp\RtmpMBWG1b\downloaded_packages
installing the source packages ‘lifecycle’, ‘ggplot2’, ‘photosynthesis’
trying URL 'https://cran.rstudio.com/src/contrib/lifecycle_1.0.3.tar.gz'
Content type 'application/x-gzip' length 106854 bytes (104 KB)
downloaded 104 KB
trying URL 'https://cran.rstudio.com/src/contrib/ggplot2_3.4.0.tar.gz'
Content type 'application/x-gzip' length 3148426 bytes (3.0 MB)
downloaded 3.0 MB
trying URL 'https://cran.rstudio.com/src/contrib/photosynthesis_2.1.1.tar.gz'
Content type 'application/x-gzip' length 2678855 bytes (2.6 MB)
downloaded 2.6 MB
'\\ad.helsinki.fi\home\q\quesadaa\Documents'
CMD.EXE was started with the above path as the current directory.
UNC paths are not supported. Defaulting to Windows directory.
* installing *source* package 'lifecycle' ...
** package 'lifecycle' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 1.0.2 is being loaded, but >= 1.0.6 is required
Calls: <Anonymous> ... withCallingHandlers -> loadNamespace -> namespaceImport -> loadNamespace
Execution halted
ERROR: lazy loading failed for package 'lifecycle'
* removing 'C:/rlibs/4.0.5/lifecycle'
* restoring previous 'C:/rlibs/4.0.5/lifecycle'
Warning in install.packages :
installation of package ‘lifecycle’ had non-zero exit status
'\\ad.helsinki.fi\home\q\quesadaa\Documents'
CMD.EXE was started with the above path as the current directory.
UNC paths are not supported. Defaulting to Windows directory.
* installing *source* package 'ggplot2' ...
** package 'ggplot2' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'vctrs' 0.4.1 is being loaded, but >= 0.5.0 is required
Calls: <Anonymous> ... withCallingHandlers -> loadNamespace -> namespaceImport -> loadNamespace
Execution halted
ERROR: lazy loading failed for package 'ggplot2'
* removing 'C:/rlibs/4.0.5/ggplot2'
* restoring previous 'C:/rlibs/4.0.5/ggplot2'
Warning in install.packages :
installation of package ‘ggplot2’ had non-zero exit status
'\\ad.helsinki.fi\home\q\quesadaa\Documents'
CMD.EXE was started with the above path as the current directory.
UNC paths are not supported. Defaulting to Windows directory.
* installing *source* package 'photosynthesis' ...
** package 'photosynthesis' successfully unpacked and MD5 sums checked
** using staged installation
** R
Error in parse(outFile) :
C:/Users/quesadaa/AppData/Local/Temp/Rtmp4UkMHR/R.INSTALL31846c817b0d/photosynthesis/R/bake-par.R:22:12: unexpected '>'
21: # Set units ----
22: .x = .x |>
^
ERROR: unable to collate and parse R files for package 'photosynthesis'
* removing 'C:/rlibs/4.0.5/photosynthesis'
Warning in install.packages :
installation of package ‘photosynthesis’ had non-zero exit status

Error installing ggplot2 in RStudio - MacOS

I'd like to express my thanks in advance for your help. I have been attempting to install the package "ggplot2" for two weeks now in RStudio, and cannot figure out my non-zero exit status errors. I have posted the resulting error code at the end of this message. I have successfully installed some packages, but have failed to install ggplot2 and plotly. I have an assignment due using these packages tonight and would greatly appreciate any insight you can give.
> install.packages("ggplot2", dependencies = TRUE)
also installing the dependencies ‘cli’, ‘rlang’, ‘lifecycle’, ‘scales’
There are binary versions available but the source versions are later:
binary source needs_compilation
cli 3.2.0 3.4.1 TRUE
rlang 1.0.2 1.0.6 TRUE
lifecycle 1.0.1 1.0.3 FALSE
scales 1.1.1 1.2.1 FALSE
ggplot2 3.3.5 3.3.6 FALSE
Do you want to install from sources the packages which need compilation? (Yes/no/cancel) Yes
installing the source packages ‘cli’, ‘rlang’, ‘lifecycle’, ‘scales’, ‘ggplot2’
trying URL 'http://archive.linux.duke.edu/cran/src/contrib/cli_3.4.1.tar.gz'
Content type 'application/octet-stream' length 540044 bytes (527 KB)
==================================================
downloaded 527 KB
trying URL 'http://archive.linux.duke.edu/cran/src/contrib/rlang_1.0.6.tar.gz'
Content type 'application/octet-stream' length 742508 bytes (725 KB)
==================================================
downloaded 725 KB
trying URL 'http://archive.linux.duke.edu/cran/src/contrib/lifecycle_1.0.3.tar.gz'
Content type 'application/octet-stream' length 106854 bytes (104 KB)
==================================================
downloaded 104 KB
trying URL 'http://archive.linux.duke.edu/cran/src/contrib/scales_1.2.1.tar.gz'
Content type 'application/octet-stream' length 270609 bytes (264 KB)
==================================================
downloaded 264 KB
trying URL 'http://archive.linux.duke.edu/cran/src/contrib/ggplot2_3.3.6.tar.gz'
Content type 'application/octet-stream' length 3061989 bytes (2.9 MB)
==================================================
downloaded 2.9 MB
* installing *source* package ‘cli’ ...
** package ‘cli’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
ERROR: compilation failed for package ‘cli’
* removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/cli’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/cli’
Warning in install.packages :
installation of package ‘cli’ had non-zero exit status
* installing *source* package ‘rlang’ ...
** package ‘rlang’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
ERROR: compilation failed for package ‘rlang’
* removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/rlang’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/rlang’
Warning in install.packages :
installation of package ‘rlang’ had non-zero exit status
* installing *source* package ‘lifecycle’ ...
** package ‘lifecycle’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace ‘rlang’ 1.0.2 is being loaded, but >= 1.0.6 is required
Calls: <Anonymous> ... withCallingHandlers -> loadNamespace -> namespaceImport -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘lifecycle’
* removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/lifecycle’
Warning in install.packages :
installation of package ‘lifecycle’ had non-zero exit status
ERROR: dependency ‘lifecycle’ is not available for package ‘scales’
* removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/scales’
Warning in install.packages :
installation of package ‘scales’ had non-zero exit status
ERROR: dependency ‘scales’ is not available for package ‘ggplot2’
* removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/ggplot2’
Warning in install.packages :
installation of package ‘ggplot2’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/sr/02bnxzdx0hvcp6c37xfhlf300000gn/T/Rtmpje9xhl/downloaded_packages’
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’

Can't install tidyverse package in R version 3.5.2

I am trying to install the tidyverse package and not being able to do it.
1-tried via Packages -> Install
2-tried from console-> install.packages("tidyverse")
Gives errors as below and therefore not loading the lirary
> library(tidyverse)
Error in library(tidyverse) : there is no package called ‘tidyverse’
Console Errors:
****************************************************************************************
> install.packages("tidyverse")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/arikl/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependencies ‘lifecycle’, ‘tidyselect’, ‘vctrs’, ‘gargle’, ‘glue’, ‘rematch2’, ‘scales’, ‘ellipsis’, ‘vroom’, ‘tzdb’, ‘broom’, ‘cli’, ‘dbplyr’, ‘dplyr’, ‘dtplyr’, ‘googledrive’, ‘googlesheets4’, ‘ggplot2’, ‘haven’, ‘hms’, ‘jsonlite’, ‘lubridate’, ‘magrittr’, ‘modelr’, ‘pillar’, ‘readr’, ‘rlang’, ‘rvest’, ‘tibble’, ‘tidyr’
There are binary versions available but the source versions
are later:
binary source needs_compilation
lifecycle 0.2.0 1.0.1 FALSE
tidyselect 1.0.0 1.1.1 TRUE
vctrs 0.2.4 0.3.8 TRUE
gargle 0.4.0 1.2.0 FALSE
glue 1.4.0 1.4.2 TRUE
rematch2 2.1.0 2.1.2 FALSE
scales 1.1.0 1.1.1 FALSE
ellipsis 0.3.0 0.3.2 TRUE
vroom 1.2.0 1.5.5 TRUE
broom 0.5.6 0.7.9 FALSE
cli 2.0.2 3.0.1 TRUE
dbplyr 1.4.3 2.1.1 FALSE
dplyr 0.8.5 1.0.7 TRUE
dtplyr 1.0.1 1.1.0 FALSE
googledrive 1.0.0 2.0.0 FALSE
googlesheets4 0.1.1 1.0.0 FALSE
ggplot2 3.3.0 3.3.5 FALSE
haven 2.2.0 2.4.3 TRUE
hms 0.5.3 1.1.1 FALSE
jsonlite 1.6.1 1.7.2 TRUE
lubridate 1.7.8 1.7.10 TRUE
magrittr 1.5 2.0.1 TRUE
modelr 0.1.6 0.1.8 FALSE
pillar 1.4.3 1.6.3 FALSE
readr 1.3.1 2.0.2 TRUE
rlang 0.4.5 0.4.11 TRUE
rvest 0.3.5 1.0.1 FALSE
tibble 3.0.1 3.1.4 TRUE
tidyr 1.0.2 1.1.4 TRUE
tidyverse 1.3.0 1.3.1 FALSE
Binaries will be installed
Package which is only available in source form, and may need
compilation of C/C++/Fortran: ‘tzdb’
These will not be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tidyselect_1.0.0.zip'
Content type 'application/zip' length 242507 bytes (236 KB)
downloaded 236 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/vctrs_0.2.4.zip'
Content type 'application/zip' length 1018801 bytes (994 KB)
downloaded 994 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/glue_1.4.0.zip'
Content type 'application/zip' length 157284 bytes (153 KB)
downloaded 153 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/ellipsis_0.3.0.zip'
Content type 'application/zip' length 44220 bytes (43 KB)
downloaded 43 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/vroom_1.2.0.zip'
Content type 'application/zip' length 1665604 bytes (1.6 MB)
downloaded 1.6 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/cli_2.0.2.zip'
Content type 'application/zip' length 397120 bytes (387 KB)
downloaded 387 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/dplyr_0.8.5.zip'
Content type 'application/zip' length 3256479 bytes (3.1 MB)
downloaded 3.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/haven_2.2.0.zip'
Content type 'application/zip' length 1050152 bytes (1.0 MB)
downloaded 1.0 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/jsonlite_1.6.1.zip'
Content type 'application/zip' length 1164207 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/lubridate_1.7.8.zip'
Content type 'application/zip' length 1583751 bytes (1.5 MB)
downloaded 1.5 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/magrittr_1.5.zip'
Content type 'application/zip' length 155738 bytes (152 KB)
downloaded 152 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/readr_1.3.1.zip'
Content type 'application/zip' length 1588558 bytes (1.5 MB)
downloaded 1.5 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/rlang_0.4.5.zip'
Content type 'application/zip' length 1115838 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tibble_3.0.1.zip'
Content type 'application/zip' length 407904 bytes (398 KB)
downloaded 398 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tidyr_1.0.2.zip'
Content type 'application/zip' length 1297802 bytes (1.2 MB)
downloaded 1.2 MB
package ‘tidyselect’ successfully unpacked and MD5 sums checked
package ‘vctrs’ successfully unpacked and MD5 sums checked
package ‘glue’ successfully unpacked and MD5 sums checked
package ‘ellipsis’ successfully unpacked and MD5 sums checked
package ‘vroom’ successfully unpacked and MD5 sums checked
package ‘cli’ successfully unpacked and MD5 sums checked
package ‘dplyr’ successfully unpacked and MD5 sums checked
package ‘haven’ successfully unpacked and MD5 sums checked
package ‘jsonlite’ successfully unpacked and MD5 sums checked
package ‘lubridate’ successfully unpacked and MD5 sums checked
package ‘magrittr’ successfully unpacked and MD5 sums checked
package ‘readr’ successfully unpacked and MD5 sums checked
package ‘rlang’ successfully unpacked and MD5 sums checked
package ‘tibble’ successfully unpacked and MD5 sums checked
package ‘tidyr’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\arikl\AppData\Local\Temp\RtmpCoTyE0\downloaded_packages
installing the source packages ‘lifecycle’, ‘gargle’, ‘rematch2’, ‘scales’, ‘broom’, ‘dbplyr’, ‘dtplyr’, ‘googledrive’, ‘googlesheets4’, ‘ggplot2’, ‘hms’, ‘modelr’, ‘pillar’, ‘rvest’, ‘tidyverse’
trying URL 'https://cran.rstudio.com/src/contrib/lifecycle_1.0.1.tar.gz'
Content type 'application/x-gzip' length 99716 bytes (97 KB)
downloaded 97 KB
trying URL 'https://cran.rstudio.com/src/contrib/gargle_1.2.0.tar.gz'
Content type 'application/x-gzip' length 313418 bytes (306 KB)
downloaded 306 KB
trying URL 'https://cran.rstudio.com/src/contrib/rematch2_2.1.2.tar.gz'
Content type 'application/x-gzip' length 13366 bytes (13 KB)
downloaded 13 KB
trying URL 'https://cran.rstudio.com/src/contrib/scales_1.1.1.tar.gz'
Content type 'application/x-gzip' length 515201 bytes (503 KB)
downloaded 503 KB
trying URL 'https://cran.rstudio.com/src/contrib/broom_0.7.9.tar.gz'
Content type 'application/x-gzip' length 631606 bytes (616 KB)
downloaded 616 KB
trying URL 'https://cran.rstudio.com/src/contrib/dbplyr_2.1.1.tar.gz'
Content type 'application/x-gzip' length 581845 bytes (568 KB)
downloaded 568 KB
trying URL 'https://cran.rstudio.com/src/contrib/dtplyr_1.1.0.tar.gz'
Content type 'application/x-gzip' length 111895 bytes (109 KB)
downloaded 109 KB
trying URL 'https://cran.rstudio.com/src/contrib/googledrive_2.0.0.tar.gz'
Content type 'application/x-gzip' length 1593656 bytes (1.5 MB)
downloaded 1.5 MB
trying URL 'https://cran.rstudio.com/src/contrib/googlesheets4_1.0.0.tar.gz'
Content type 'application/x-gzip' length 222038 bytes (216 KB)
downloaded 216 KB
trying URL 'https://cran.rstudio.com/src/contrib/ggplot2_3.3.5.tar.gz'
Content type 'application/x-gzip' length 3063309 bytes (2.9 MB)
downloaded 2.9 MB
trying URL 'https://cran.rstudio.com/src/contrib/hms_1.1.1.tar.gz'
Content type 'application/x-gzip' length 43117 bytes (42 KB)
downloaded 42 KB
trying URL 'https://cran.rstudio.com/src/contrib/modelr_0.1.8.tar.gz'
Content type 'application/x-gzip' length 121333 bytes (118 KB)
downloaded 118 KB
trying URL 'https://cran.rstudio.com/src/contrib/pillar_1.6.3.tar.gz'
Content type 'application/x-gzip' length 1130236 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/src/contrib/rvest_1.0.1.tar.gz'
Content type 'application/x-gzip' length 94307 bytes (92 KB)
downloaded 92 KB
trying URL 'https://cran.rstudio.com/src/contrib/tidyverse_1.3.1.tar.gz'
Content type 'application/x-gzip' length 702779 bytes (686 KB)
downloaded 686 KB
* installing *source* package 'lifecycle' ...
** package 'lifecycle' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 0.4.5 is being loaded, but >= 0.4.10 is required
ERROR: lazy loading failed for package 'lifecycle'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/lifecycle'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘lifecycle’ had non-zero exit status
* installing *source* package 'gargle' ...
** package 'gargle' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 0.4.5 is being loaded, but >= 0.4.9 is required
ERROR: lazy loading failed for package 'gargle'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/gargle'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘gargle’ had non-zero exit status
* installing *source* package 'rematch2' ...
** package 'rematch2' successfully unpacked and MD5 sums checked
** R
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'lifecycle'
ERROR: lazy loading failed for package 'rematch2'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/rematch2'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘rematch2’ had non-zero exit status
* installing *source* package 'broom' ...
** package 'broom' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'dplyr' 0.8.5 is being loaded, but >= 1.0.0 is required
ERROR: lazy loading failed for package 'broom'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/broom'
* restoring previous 'C:/Users/arikl/Documents/R/win-library/3.5/broom'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘broom’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'scales'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/scales'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘scales’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'dbplyr'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/dbplyr'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘dbplyr’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'dtplyr'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/dtplyr'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘dtplyr’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'hms'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/hms'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘hms’ had non-zero exit status
* installing *source* package 'modelr' ...
** package 'modelr' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'lifecycle'
ERROR: lazy loading failed for package 'modelr'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/modelr'
* restoring previous 'C:/Users/arikl/Documents/R/win-library/3.5/modelr'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘modelr’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'pillar'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/pillar'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘pillar’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'rvest'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/rvest'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘rvest’ had non-zero exit status
ERROR: dependencies 'gargle', 'lifecycle', 'pillar' are not available for package 'googledrive'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/googledrive'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘googledrive’ had non-zero exit status
ERROR: dependency 'scales' is not available for package 'ggplot2'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/ggplot2'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘ggplot2’ had non-zero exit status
ERROR: dependencies 'gargle', 'googledrive', 'rematch2' are not available for package 'googlesheets4'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/googlesheets4'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘googlesheets4’ had non-zero exit status
ERROR: dependencies 'dbplyr', 'dtplyr', 'googledrive', 'googlesheets4', 'ggplot2', 'hms', 'pillar', 'rvest' are not available for package 'tidyverse'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/tidyverse'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘tidyverse’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\arikl\AppData\Local\Temp\RtmpCoTyE0\downloaded_packages’
> library(tidyverse)
Error in library(tidyverse) : there is no package called ‘tidyverse’
You have a very old version of R. You should update to the current version if you want things to go smoothly.
If you can't do that, here's what you'll have to do:
Install the version of Rtools suitable for R 3.5.x.
Install the packages you want. Some of them won't work, because they will need later versions of R, but won't declare that. So when you find one that fails, try installing the previous version of that package. If that also fails, try an even earlier one. Etc. Your R version was current in 2018, so you may need to go that far back in time to find compatible packages.
Once you finally have everything working, try to update your packages. Maybe some of them could be more recent versions, maybe not. Do them one at a time. Typically tidyverse needs about 90 of them, so this will take a while.
So I recommend that you update your R version.
On my macOS12, it prompts me to install openssl and then install tinyverse again

Non-zero exit status tidyverse install packages Rstudio

I have been roaming the internet trying to find a solution, but haven't found it yet.
My problem is: i can't install tidytext. I also found out I can't re-install tidyverse for some reason.
The error code is:
install.packages("tidytext")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/maria/OneDrive/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘ISOcodes’ is not available
also installing the dependency ‘stopwords’
There is a binary version available but the source
version is later:
binary source needs_compilation
stopwords 0.9.0 1.0 FALSE
installing the source packages ‘stopwords’, ‘tidytext’
trying URL 'https://cran.rstudio.com/src/contrib/stopwords_1.0.tar.gz'
Content type 'application/x-gzip' length 104532 bytes (102 KB)
downloaded 102 KB
trying URL 'https://cran.rstudio.com/src/contrib/tidytext_0.2.2.tar.gz'
Content type 'application/x-gzip' length 3088493 bytes (2.9 MB)
downloaded 2.9 MB
ERROR: dependency 'ISOcodes' is not available for package 'stopwords'
* removing 'C:/Users/maria/OneDrive/Documents/R/win-library/3.4/stopwords'
In R CMD INSTALL
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "C:\Users\maria\OneDrive\Documents\R\win-library\3.4" C:\Users\maria\AppData\Local\Temp\RtmpOUYnrR/downloaded_packages/stopwords_1.0.tar.gz' had status 1
Warning in install.packages :
installation of package ‘stopwords’ had non-zero exit status
ERROR: dependency 'stopwords' is not available for package 'tidytext'
* removing 'C:/Users/maria/OneDrive/Documents/R/win-library/3.4/tidytext'
In R CMD INSTALL
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "C:\Users\maria\OneDrive\Documents\R\win-library\3.4" C:\Users\maria\AppData\Local\Temp\RtmpOUYnrR/downloaded_packages/tidytext_0.2.2.tar.gz' had status 1
Warning in install.packages :
installation of package ‘tidytext’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\maria\AppData\Local\Temp\RtmpOUYnrR\downloaded_packages’
> install.packages("tidyverse")
Error in install.packages : Updating loaded packages
Restarting R session...
> install.packages("tidyverse")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/maria/OneDrive/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
also installing the dependencies ‘ellipsis’, ‘vctrs’, ‘lifecycle’, ‘dplyr’, ‘haven’, ‘hms’, ‘purrr’, ‘rlang’, ‘tibble’, ‘tidyr’, ‘xml2’
There are binary versions available but the source
versions are later:
binary source needs_compilation
ellipsis 0.1.0 0.3.0 TRUE
vctrs 0.1.0 0.2.2 TRUE
dplyr 0.8.0.1 0.8.4 TRUE
haven 2.1.0 2.2.0 TRUE
hms 0.4.2 0.5.3 FALSE
purrr 0.3.2 0.3.3 TRUE
rlang 0.3.4 0.4.4 TRUE
tibble 2.1.1 2.1.3 TRUE
tidyr 0.8.3 1.0.2 TRUE
xml2 1.2.0 1.2.2 TRUE
tidyverse 1.2.1 1.3.0 FALSE
Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/ellipsis_0.1.0.zip'
Content type 'application/zip' length 30847 bytes (30 KB)
downloaded 30 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/vctrs_0.1.0.zip'
Content type 'application/zip' length 499748 bytes (488 KB)
downloaded 488 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/dplyr_0.8.0.1.zip'
Content type 'application/zip' length 3029353 bytes (2.9 MB)
downloaded 2.9 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/haven_2.1.0.zip'
Content type 'application/zip' length 988500 bytes (965 KB)
downloaded 965 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/purrr_0.3.2.zip'
Content type 'application/zip' length 327437 bytes (319 KB)
downloaded 319 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/rlang_0.3.4.zip'
Content type 'application/zip' length 1080437 bytes (1.0 MB)
downloaded 1.0 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/tibble_2.1.1.zip'
Content type 'application/zip' length 238931 bytes (233 KB)
downloaded 233 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/tidyr_0.8.3.zip'
Content type 'application/zip' length 907112 bytes (885 KB)
downloaded 885 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/xml2_1.2.0.zip'
Content type 'application/zip' length 3543977 bytes (3.4 MB)
downloaded 3.4 MB
package ‘ellipsis’ successfully unpacked and MD5 sums checked
package ‘vctrs’ successfully unpacked and MD5 sums checked
package ‘dplyr’ successfully unpacked and MD5 sums checked
package ‘haven’ successfully unpacked and MD5 sums checked
package ‘purrr’ successfully unpacked and MD5 sums checked
package ‘rlang’ successfully unpacked and MD5 sums checked
package ‘tibble’ successfully unpacked and MD5 sums checked
package ‘tidyr’ successfully unpacked and MD5 sums checked
package ‘xml2’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\maria\AppData\Local\Temp\Rtmpi6CSjp\downloaded_packages
installing the source packages ‘lifecycle’, ‘hms’, ‘tidyverse’
trying URL 'https://cran.rstudio.com/src/contrib/lifecycle_0.1.0.tar.gz'
Content type 'application/x-gzip' length 150752 bytes (147 KB)
downloaded 147 KB
trying URL 'https://cran.rstudio.com/src/contrib/hms_0.5.3.tar.gz'
Content type 'application/x-gzip' length 134669 bytes (131 KB)
downloaded 131 KB
trying URL 'https://cran.rstudio.com/src/contrib/tidyverse_1.3.0.tar.gz'
Content type 'application/x-gzip' length 712837 bytes (696 KB)
downloaded 696 KB
* installing *source* package 'lifecycle' ...
** package 'lifecycle' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 0.3.4 is being loaded, but >= 0.4.0 is required
ERROR: lazy loading failed for package 'lifecycle'
* removing 'C:/Users/maria/OneDrive/Documents/R/win-library/3.4/lifecycle'
In R CMD INSTALL
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "C:\Users\maria\OneDrive\Documents\R\win-library\3.4" C:\Users\maria\AppData\Local\Temp\Rtmpi6CSjp/downloaded_packages/lifecycle_0.1.0.tar.gz' had status 1
Warning in install.packages :
installation of package ‘lifecycle’ had non-zero exit status
* installing *source* package 'hms' ...
** package 'hms' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'vctrs' 0.1.0 is being loaded, but >= 0.2.1 is required
ERROR: lazy loading failed for package 'hms'
* removing 'C:/Users/maria/OneDrive/Documents/R/win-library/3.4/hms'
* restoring previous 'C:/Users/maria/OneDrive/Documents/R/win-library/3.4/hms'
In R CMD INSTALL
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "C:\Users\maria\OneDrive\Documents\R\win-library\3.4" C:\Users\maria\AppData\Local\Temp\Rtmpi6CSjp/downloaded_packages/hms_0.5.3.tar.gz' had status 1
Warning in install.packages :
installation of package ‘hms’ had non-zero exit status
* installing *source* package 'tidyverse' ...
** package 'tidyverse' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace 'haven' 2.1.0 is being loaded, but >= 2.2.0 is required
ERROR: lazy loading failed for package 'tidyverse'
* removing 'C:/Users/maria/OneDrive/Documents/R/win-library/3.4/tidyverse'
* restoring previous 'C:/Users/maria/OneDrive/Documents/R/win-library/3.4/tidyverse'
In R CMD INSTALL
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "C:\Users\maria\OneDrive\Documents\R\win-library\3.4" C:\Users\maria\AppData\Local\Temp\Rtmpi6CSjp/downloaded_packages/tidyverse_1.3.0.tar.gz' had status 1
Warning in install.packages :
installation of package ‘tidyverse’ had non-zero exit status
I thought the issue was dependencies, but it's not in the error message/output.
Because of the Rtools warning, I have downloaded Rtools, which never was required before - but I get this:
> install.packages("Rtools")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/maria/OneDrive/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘Rtools’ is not available (for R version 3.4.4)
My R / system info: [Default] [64-bit] C:\Program Files\R\R-3.4.4
I work on a Microsoft computer.
Hope someone knows what's what here!
Best,
Maria
#MrFlick posted the answer in the section above:
I had the old version of R. Installed to R 3.6.0 and everything works.
I first only updated Rstudio, not R itself. It wasn't until I updated R that it worked.
Find the link here: https://cran.r-project.org/bin/windows/base/old/3.6.0/

RMD packages can't be downloaded in R Studio

I can't download the RMD packages in R studio. I tried it by running install.packages("rmarkdown"), and I tried it by File > New File > R Markdown > Download packages.
This is the output:
> install.packages("rmarkdown")
Installing package into ‘C:/Users/Luke/Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)
also installing the dependencies ‘glue’, ‘stringi’, ‘knitr’, ‘yaml’, ‘stringr’
There are binary versions available but the source versions are later:
binary source needs_compilation
glue 1.0.0 1.3.1 TRUE
stringi 1.1.5 1.4.3 TRUE
knitr 1.15.1 1.23 FALSE
yaml 2.1.14 2.2.0 TRUE
stringr 1.2.0 1.4.0 FALSE
rmarkdown 1.4 1.13 FALSE
Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/glue_1.0.0.zip'
Content type 'application/zip' length 34947 bytes (34 KB)
downloaded 34 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/stringi_1.1.5.zip'
Content type 'application/zip' length 14220135 bytes (13.6 MB)
downloaded 13.6 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/yaml_2.1.14.zip'
Content type 'application/zip' length 180051 bytes (175 KB)
downloaded 175 KB
package ‘glue’ successfully unpacked and MD5 sums checked
package ‘stringi’ successfully unpacked and MD5 sums checked
package ‘yaml’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\Luke\AppData\Local\Temp\Rtmpq6rTgq\downloaded_packages
installing the source packages ‘knitr’, ‘stringr’, ‘rmarkdown’
trying URL 'https://cran.rstudio.com/src/contrib/knitr_1.23.tar.gz'
Content type 'application/x-gzip' length 880134 bytes (859 KB)
downloaded 859 KB
trying URL 'https://cran.rstudio.com/src/contrib/stringr_1.4.0.tar.gz'
Content type 'application/x-gzip' length 135777 bytes (132 KB)
downloaded 132 KB
trying URL 'https://cran.rstudio.com/src/contrib/rmarkdown_1.13.tar.gz'
Content type 'application/x-gzip' length 3155180 bytes (3.0 MB)
downloaded 3.0 MB
* installing *source* package 'stringr' ...
** package 'stringr' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'stringi' 1.1.5 is being loaded, but >= 1.1.7 is required
ERROR: lazy loading failed for package 'stringr'
* removing 'C:/Users/Luke/Documents/R/win-library/3.2/stringr'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-32~1.3/bin/i386/R" CMD INSTALL -l "C:\Users\Luke\Documents\R\win-library\3.2" C:\Users\Luke\AppData\Local\Temp\Rtmpq6rTgq/downloaded_packages/stringr_1.4.0.tar.gz' had status 1
Warning in install.packages :
installation of package ‘stringr’ had non-zero exit status
ERROR: dependency 'stringr' is not available for package 'knitr'
* removing 'C:/Users/Luke/Documents/R/win-library/3.2/knitr'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-32~1.3/bin/i386/R" CMD INSTALL -l "C:\Users\Luke\Documents\R\win-library\3.2" C:\Users\Luke\AppData\Local\Temp\Rtmpq6rTgq/downloaded_packages/knitr_1.23.tar.gz' had status 1
Warning in install.packages :
installation of package ‘knitr’ had non-zero exit status
ERROR: dependencies 'knitr', 'stringr' are not available for package 'rmarkdown'
* removing 'C:/Users/Luke/Documents/R/win-library/3.2/rmarkdown'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-32~1.3/bin/i386/R" CMD INSTALL -l "C:\Users\Luke\Documents\R\win-library\3.2" C:\Users\Luke\AppData\Local\Temp\Rtmpq6rTgq/downloaded_packages/rmarkdown_1.13.tar.gz' had status 1
Warning in install.packages :
installation of package ‘rmarkdown’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\Luke\AppData\Local\Temp\Rtmpq6rTgq\downloaded_packages’
The C:\Users\Luke\AppData\Local\Temp\Rtmpq6rTgq\downloaded_packages folder contains:
Screenshot of named folder
I am very inexperienced with programming in R, so I have no idea what to do with this. I am learning to do it (via the online Udacity course), and for that I need these RMD packages to continue. I hope someone can help me.

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