SHINY Summarise info based on sheet selected by user after uploading file - r

My goal is that user uploads an Excel file. Then, the user selects which sheets wants to be summarised, after the selection has been updated. I have managed to update selectInput with the name of the sheets but I have not been able to find\understand how to summarise based on what the sheet selected by the user. Thanks for any help.
library(shiny)
library(shinythemes)
library(data.table)
library(ggplot2)
library(dplyr)
library(readxl)
not_sel <- "Not Selected"
# Define UI for application that draws a histogram
ui <- fluidPage('MAIN TITLE',
theme = shinytheme('flatly'),
tabsetPanel(
sidebarLayout(
sidebarPanel(
fileInput('files','Import File', accept = c('.csv','.xlsx'),
multiple = F),
actionButton('boton1', 'Load', icon = icon('table')),
br(),
selectInput("indices", "Select SHEET:", choices = c(not_sel))
),
mainPanel(
tabsetPanel(
tabPanel('Data',
tableOutput('tabla'),
tableOutput('cabeza')),
tabPanel('Stats',
# selectInput('var01', 'Variable to summarise', choices = c(not_sel)),
tableOutput('stats')),
)
)
)
)
)
##############
server <- function(input, output, session) {
options(shiny.maxRequestSize=10*1024^2)
df <- eventReactive(input$boton1, {
req(input$files)
if(is.null(input$files))return(NULL)
# else{
read_excel(input$files$datapath)
# }
})
# Sheets of file uploaded
sheets_name <- reactive({
if (!is.null(input$files)) {
return(excel_sheets(path = input$files$datapath))
} else {
return(NULL)
}
})
# Update inputSelector with sheet names
observeEvent(df(),{
choices <- c(sheets_name())
updateSelectInput(inputId = "indices", choices = choices)
})
# DATA Tab
## This will show the name of the file
output$tabla <- renderTable({
input$files$name
})
## This Shows the head() but it is only showing the first sheet
output$cabeza <- renderTable({
tabla <- as_tibble(bind_cols(Date = format(as.Date(df()$Date),"%Y-%m-%d"),
Close.Price = df()$Close))
head(tabla)
})
# HERE is where I do not know how to calculate based on selection
# Table for STATS
output$stats <- renderTable({
datos <- df()
Value <- c(round(mean(datos$Close,na.rm = T),2)
)
Statistic <- c("Mean")
data.table(Statistic, Value)
})
}
# Run the application
shinyApp(ui = ui, server = server)
I want to assume that by knowing how to calculate mean based on the sheet selected, I. can replicate the code for the top rows (head()) shown in the Data Panel.
If I missed a similar question asked, I would appreciate any link and I will try the solution proposed first.
As I cannot share the file, this is how the file would look:

After working with this answer I made my app work. If there is a 'cleaner'/'better' answer, I will be happy to read.
Following the recommendation in the linked answer my server ended up like this:
ui <-fluidPage{
#My UI stayed the same with the exception of adding
uiOutput("dropdownUI") #Whererever I needed to appear
}
server <- function(input, output, session) {
...ANSWER FROM THE LINK...
## STATS Tab
output$stats <- renderTable({
Values <- c(round(mean(Dat()[,2],na.rm = T),2)
)
Statistics <- c("Mean")
data.table(Statistics, Values)
})
}

Related

How to read a csv file in Shiny?

I'm trying to create a shiny dashboard that allows the user to select a csv file. The file contains only two columns that are order number and dateCreated. I want the user to be able to in addition, select the date range that they desire and get a summary count statistic.
So far my code is as follows:
library(shiny)
library(plotly)
library(colourpicker)
library(ggplot2)
ui <- fluidPage(
titlePanel("Case Referrals"),
sidebarLayout(
sidebarPanel(
fileInput("file", "Select a file"),
sliderInput("period", "Time period observed:",
min(data()[, c('dateCreated')]), max(data()[, c('dateCreated')]),
value = c(min(data[, c('dateCreated')]),max(data()[, c('dateCreated')])))
),
mainPanel(
DT::dataTableOutput("table")
)
)
)
# Define the server logic
server <- function(input, output) {
# file input
input_file <- reactive({
if (is.null(input$file)) {
return("")
}
})
# summarizing data into counts
data <- input_file()
data <- subset(data, dateCreated >= input$period[1] & dateCreated <= input$period[2])
output$table <- DT::renderDataTable({
data
})
}
shinyApp(ui = ui, server = server)
I get an error message saying:
Error in data()[, c("dateCreated")] : incorrect number of dimensions
Can anyone help me understand what the problem might be and/or provide a better framework for doing this? And to be clear in the csv file, the createDate variable is broken down into individual days for when the order was placed.
Thank you!
I added comments to the faulty steps.
library(shiny)
ui <- fluidPage(
titlePanel("Case Referrals"),
sidebarLayout(
sidebarPanel(
fileInput("file", "Select a file"),
# you cannot call data() in your ui.
# You would have to wrap this in renderUI inside of your server and use
# uiOutput here in the ui
sliderInput("period", "Time period observed:", min = 1, max = 10, value = 5)
),
mainPanel(
DT::dataTableOutput("table")
)
)
)
# Define the server logic
server <- function(input, output) {
input_file <- reactive({
if (is.null(input$file)) {
return("")
}
# actually read the file
read.csv(file = input$file$datapath)
})
output$table <- DT::renderDataTable({
# render only if there is data available
req(input_file())
# reactives are only callable inside an reactive context like render
data <- input_file()
data <- subset(data, dateCreated >= input$period[1] & dateCreated <= input$period[2])
data
})
}
shinyApp(ui = ui, server = server)

Reactive CSV selection then used in function as df

I am new to shiny and trying to combine a couple features and having some trouble.
I want for the user to be able to select a CSV and then be presented with a random instance (in this case tweet) from that table. The following code worked when "tweetData" was a statically loaded csv using read_csv.
## function to return random row number from data set
getTweet <- function(){
tweetData[sample(nrow(tweetData), 1), ]
}
function(input, output, session) {
## set reactive values, get randomized tweet
appVals <- reactiveValues(
tweet = getTweet(),
ratings = data.frame(tweet = character(), screen_name = character(), rating = character())
)
I want to instead use a dynamically chosen csv for "tweetData", something like adding this??
csvName <- reactive(paste0('../folder_path/', input$file_name))
selectedData <- read.csv(csvName)
How can use reactively chosen csvs to fit into the structure of the first code chunk?
You might be looking for fileInput for giving user an option to upload a dataset.
This is a simple reproducible example -
library(shiny)
ui <- fluidPage(
sidebarLayout(
sidebarPanel(
fileInput("file1", "Choose CSV File"),
),
mainPanel(
tableOutput("contents")
)
)
)
server <- function(input, output) {
output$contents <- renderTable({
req(input$file1)
read.csv(input$file1$datapath)
})
}
shinyApp(ui, server)

Dataframe - R - Shiny

i have a question regarding Shiny and the usage of Data frames.
I think i understood that i need to create isolated or reactive environmentes to interact with, but if i try to work with the Dataframe i get an error message:
Error in pfData: konnte Funktion "pfData" nicht finden
i tried to manipulate the dataframe by this code:
server <- function(input, output) {
observeEvent(input$go,
{
pf_name <- reactive({input$pfID})
pf_date <- reactive({input$pfDate})
if (pf_name()!="please select a PF") {
pfData <- reactive(read.csv(file =paste(pf_name(),".csv",sep=""),sep=";",dec=","))
MDur <- pfData()[1,15]
pfData <- pfData()[3:nrow(pfData()),]
Total = sum(pfData()$Eco.Exp...Value.long)
}
})
}
If i manipulate my Dataframe in the console it works just fine:
pfData <- pfData[3:nrow(pfData),]
Total = sum(pfData$Eco.Exp...Value.long)
Assets = sum(as.numeric(gsub(",",".",gsub(".","",pfData$Value,fixed=TRUE),fixed=TRUE)))
pfData$Exposure <- with(pfData, Eco.Exp...Value.long /Total)
can you help me?
Edit:
library(shiny)
ui <- fluidPage(
fluidRow(
column(6, offset =3,
wellPanel(
"Choose Mandate and Date",
fluidRow(
column(4,selectInput("pfID",label = "",
choices = list("please select a PF","GF25",
"FPM"),
selected = "please select a PF") ),
column(4, dateInput("pfDate",label="",value = Sys.Date()) ),
column(2, actionButton("go","Submit")),column(2,textOutput("selected_var"))
)
)
)
)
)
# Define server logic ----
server <- function(input, output) {
pfDataReactive <- reactive({
input$go
if (pf_name()!="please select a PF") {
pfData <- read.csv(file =paste(pf_name(),".csv",sep=""),sep=";",dec=",")
MDur <- pfData[1,15]
pfData <- pfData[3:nrow(pfData),]
Total = sum(pfData$Eco.Exp...Value.long)
Assets = sum(as.numeric(gsub(",",".",gsub(".","",pfData$Value,fixed=TRUE),fixed=TRUE)))
pfData$Exposure <- with(pfData, Eco.Exp...Value.long /Total)
pfData
output$selected_var <- renderText({paste(MDur)})
}
})
}
# Run the app ----
shinyApp(ui = ui, server = server)
Thank you
Stefan
Without a working example, it's imposible to be sure what you're trying to do, but it sounds like you need a reactive rather than using observeEvent.
Try something like
pfDataReactive <- reactive({
input$go
pfData <- read.csv(file =paste(pf_name(),".csv",sep=""),sep=";",dec=",")
Total = sum(pfData$Eco.Exp...Value.long)
Assets = sum(as.numeric(gsub(",",".",gsub(".","",pfData$Value,fixed=TRUE),fixed=TRUE)))
pfData$Exposure <- with(pfData, Eco.Exp...Value.long /Total)
pfData
})
And then use pfDataReactive() in your Shiny app's server function wherever you would refer to pfData in your console code.
The standalone reference to input$go ensures the reactive will update whenever input$go changes/is clicked/etc.
Update
There are still significant issues with your code. You've added an assignment to an output object as the last line of the reactive I gave you, so the reactive always returns NULL. That's not helpful and is one of the reasons why it "doesn't active at all"...
Second, you test for the existence of an reactive/function called pf_name when the relevant input object appears to be input$pfID. That's another reason why the reactive is never updated.
Note the change to the definition of input$pfID that I've made to improve the readability of the pfDataReactive object. (This change also probably means that you can do away with input$go entirely.)
As you say, I don't have access to your csv file, so I can't test your code completely. I've modified the body of the pfDataReactive to simply return the mtcars dataset as a string. I've also edited the code I've commented out to hopefully run correctly when you use it with the real csv file.
This code appears to give the behaviour you want,. Though, if I may make a subjective comment, I think the layout of your GUI is appaling. ;=)
library(shiny)
ui <- fluidPage(
fluidRow(
column(6, offset =3,
wellPanel(
"Choose Mandate and Date",
fluidRow(
column(4,selectInput("pfID",label = "",
# Modified to that "Pleaseselect a PF" returns NULL
choices = list("please select a PF"="","GF25", "FPM"),
selected = "please select a PF") ),
column(4, dateInput("pfDate",label="",value = Sys.Date()) ),
column(2, actionButton("go","Submit")),column(2,textOutput("selected_var"))
)
)
)
)
)
# Define server logic ----
server <- function(input, output) {
pfDataReactive <- reactive({
# Don't do anything until we have a PF csv file
req(input$pfID)
input$go
# Note the change to the creation of the file name
# pfData <- read.csv(file =paste(input$pfID,".csv",sep=""),sep=";",dec=",")
# pfData <- pfData[3:nrow(pfData),]
# Total = sum(pfData$Eco.Exp...Value.long)
# Assets = sum(as.numeric(gsub(",",".",gsub(".","",pfData$Value,fixed=TRUE),fixed=TRUE)))
# pfData$Exposure <- with(pfData, Eco.Exp...Value.long /Total)
# MDur <- pfData[1,15]
# If you want to print MDur in the selected_var output, MDur should be the retrun value from this reactive
# MDur
mtcars
})
output$selected_var <- renderText({
print("Yep!")
as.character(pfDataReactive())
})
}
# Run the app ----
shinyApp(ui = ui, server = server)
Next time, please, please, make more effort to provide a MWE. This post may help.
This is a good introduction to Shiny.

Downloading the outputs of a reactive table in R shiny

I have an R shiny app that gets a .csv import from a user and searches the imported data across a built-in data frame, then gives the % match in the output. The UI is very simple, with a few different inputs (import .csv, a slider, and some radio buttons). What I want is to be able to take the reactive table output and print this to a .csv that the user can download to their machine. The server side of the app looks something like this:
server <- function(input, output){
rvals <- reactiveValues()
observeEvent(input$file_1,{
req(input$file_1)
rvals$csv <<- read.csv(input$file_1$datapath, header = TRUE)
#some data processing here
})
output$contents <- renderTable({
if(input$select == 1){
x <- function
}else if(input$select == 2){
x <- function
}else if(input$select == 3){x <- function}
#some more data processing and formatting here
return(x)
},digits = 4)
}
I would like to have the data table x be able to become a .csv that can be downloaded by clicking a download button. In the server, I added the following code, but when I try to download the data it just downloads a blank file and says "SERVER ERROR" in my downloads manager on my machine.
output$downloadData <- downloadHandler(
filename = "thename.csv",
content = function(file){
write.csv(x, file)
}
In the console I also get the error message:
Warning: Error in is.data.frame: object 'x' not found [No stack trace available]
The object you create inside the expression of renderTable is not available outside of it. Instead you could assign it to the reactive values you set up. Below is a working example (note that I have tried to replicate your code so the data will not be available until you click on "Upload CSV", which here just calls mtcars).
library(shiny)
ui = fluidPage(
sidebarPanel(
actionButton(inputId = "uploadCsv", label = "Upload CSV:", icon = icon("upload")),
selectInput(inputId = "preProc", label = "Pre-processing", choices = c("Mean"=1,"Sum"=2)),
downloadButton("downloadData", label = "Download table")
),
mainPanel(
h4("My table:"),
tableOutput("contents")
)
)
server <- function(input, output) {
rvals <- reactiveValues(
csv=NULL,
x=NULL
)
observeEvent(input$uploadCsv,{
rvals$csv <- mtcars # using example data since I don't have your .csv
# rvals$csv <- read.csv(input$file_1$datapath, header = TRUE)
#some data processing here
})
output$contents <- renderTable({
# Assuing the below are functions applied to your data
req(
input$preProc,
!is.null(rvals$csv)
)
if(input$preProc == 1){
rvals$x <- data.frame(t(colMeans(mtcars)))
}else {
rvals$x <- data.frame(t(colSums(mtcars)))
}
return(rvals$x)
},digits = 4)
output$downloadData <- downloadHandler(
filename = "myFile.csv",
content = function(file){
write.csv(rvals$x, file)
}
)
}
shinyApp(ui,server)
EventReactive already outputs a reactive value, you don't need to create an extra reactiveVal, see example below :
library(shiny)
# Define UI
ui <- fluidPage(
# Application title
titlePanel("Test"),
mainPanel(
actionButton("show", "Download"),
textOutput("result")
)
)
server <- function(input, output) {
csvfile <- eventReactive(req(input$show), ignoreNULL = T, {
"Content of file"
})
output$result <- reactive(
paste("result : ",csvfile()))
}
# Run the application
shinyApp(ui = ui, server = server)
I would also avoid to use <<-operator in a reactive expression.

How to run a function that gets data from inside eventReactive and plot in table?

I'm very new to shiny and am having some trouble and have been searching all day, so hopefully someone can help me. Once an action button (actionButton, on UI) is selected by a user, I would like the server script to call a function (evenReactive in server) I wrote (myfunction, see below) that uses the input items from the UI and gets the right parameters I need to run myfunction and produce a n X2 data matrix that will be plotted as a table (renderTable in server, below). The data is a n X 2 matrix.
I have some sample code below. It's not the entre code, so you will not see the UI with the inputs I am putting in my function, or the server parts associated. But, it is the part I am trying to fix. I hope that's ok. I don't need the renderText, but when I take it out I get an error. Sorry for the formatting. Copy and pasting changed it a bit.
library(shiny)
ui <- shinyUI(fluidPage
(column(4,actionButton("gobutton", "Run"),verbatimTextOutput("ntext1")),
column(4, DT::dataTableOutput("table",width = "75%"))))
library(shiny)
shinyServer(function(input, output, session)
ntext1 <- eventReactive(input$gobutton, {
if (input$gobutton==1){
data=myfunction(input$checkbox,input$dateRange)}
})
output$ntext1 <- renderText({ntext1()})
output$table <- DT::renderDataTable(DT::datatable({
data
})
))
myfunction <-function(All,date1,date2,source_cd,tran_cd,airline_list,mag_level) {
print(All); print(date1); print(date2); print(source_cd);print(tran_cd);print(airline_list);print(mag_level)
setwd("C:/Users/TRomano/Documents/Projects/TrendAnalysis/Data")
data = read.csv("Airlines.csv",header = TRUE)
return(data)
}
For this type of problem I like to make use of reactiveValues()that are designed to store data in a reactive way.
Here is a simple app (single app, not split into server & ui) that demonstrates what I think you are trying to do
library(shiny)
library(DT)
ui <- shinyUI(
fluidPage(
column(width = 4,
actionButton("gobutton", "Run")
column(width = 4,
DT::dataTableOutput("table",
width = "75%"))))
server <- shinyServer(function(input, output, session){
rv <- reactiveValues()
rv$data <- NULL
observe({ ## will 'observe' the button press
if(input$gobutton){
print("here") ## for debugging
rv$data <- myfunction() ## store the data in the reactive value
rv$data
}
})
output$table <- DT::renderDataTable({
## The data has been stored in our rv, so can just return it here
rv$data
})
})
myfunction <- function(){
data <- data.frame(id = c(1,2,3),
val = letters[1:3])
return(data)
}
shinyApp(ui, server)
library(shiny)
library(shinydashboard)
ui <- dashboardPage(
dashboardHeader(title = "Company Name"),
dashboardSidebar(sidebarMenu(
menuItem("Results Table", tabName = "ResultsTable", icon = icon
("ResultsTable")),
dashboardBody(
tabItems(
tabItem(tabName tabItem(tabName = "ResultsTable",
fluidPage(
headerPanel(
fluidRow(
column(4,
selectInput("sour",
"Source Type:",
c("All",
unique(as.character(data_source_cd)))), offset=2
),
column(4,
selectInput("tran",
"Transaction Type:",
c("All",
unique(as.character(tran_cd)))))),
# Create a new row for the table.
fluidRow(column(8, DT::dataTableOutput("table",width = "75%"),offset = 2))))))
library(shiny)
shinyServer(function(input, output, session) {
ntext1 <- eventReactive(input$gobutton, {
if (input$dateRange[2]<input$dateRange[1]){print("You selected the date range option;however, the end date entered occurs before the starting date")}else{
output$ntext1 <- renderText({print("Analysis complete...")});
observe({
if(input$gobutton){
rv$data <- myfunction() }
})
output$table <- DT::renderDataTable(DT::datatable({
data <- rv$data
if (input$sour != "All") {
data <- data[data[,5] == input$sour,]
}else{data}
if (input$tran != "All") {
data <-data[data[,6] == input$tran,]
}else{data}
}))
}})
Once an action button is selected on the main page of my dashboard(not shown), myfunction runs analysis with the inputs from the main dashboard page. On another tab, a table will show once the analysis is complete. There are drop down menus (input$tran, input$sour) that will reduce what is in the table depending on what the user selects. If there are any errors in the input, a warning of text comes up on the main dashboard page and the tab with the table will not be created until the correct inputs are selected.
The observe function allowed me to run my function and the output data of the function set to a variable I could later use to create the table (shown).
THis is my first time posting. Any questions feel free to ask.

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