I installed ChemmineR and ChemmineOB on my MacOSX (MaxOS Ventura; R version 4.2.1) and got this:
library(ChemmineOB)
Error: package or namespace load failed for ‘ChemmineOB’:
.onLoad failed in loadNamespace() for 'ChemmineOB', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.2/Resources/library/ChemmineOB/libs/ChemmineOB.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.2/Resources/library/ChemmineOB/libs/ChemmineOB.so, 0x000A): Library not loaded: /usr/local/opt/open-babel/lib/libopenbabel.7.dylib
Referenced from: <77D86F2D-1FC2-3CDF-81D4-73A54E882F99> /Library/Frameworks/R.framework/Versions/4.2/Resources/library/ChemmineOB/libs/ChemmineOB.so
Reason: tried: '/usr/local/opt/open-babel/lib/libopenbabel.7.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/opt/open-babel/lib/libopenbabel.7.dylib' (no such file), '/usr/local/opt/open-babel/lib/libopenbabel.7.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libopenbabel.7.dylib' (no such file), '/Users/hanyan/l
Related
I have tried adding the path in the terminal using the solution given here and it said was successfully added but still I am unable to load the RWeka package.
It is giving me the below error -
Error: package or namespace load failed for ‘RWeka’:
.onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/rJava/libs/rJava.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.0/Resources/library/rJava/libs/rJava.so, 6): Symbol not found: _EXTPTR_PTR
Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/rJava/libs/rJava.so
Expected in: /Library/Frameworks/R.framework/Resources/lib/libR.dylib
in /Library/Frameworks/R.framework/Versions/4.0/Resources/library/rJava/libs/rJava.so
In addition: Warning message:
package ‘RWeka’ was built under R version 4.0.2
What could be done? Please Help!
I have tried everything to try and get rJava to load but I have failed. Any suggestions as to how I can solve this problem? When I run library(rJava) in R (not R studio) it seems to load.
Sys.setenv(JAVA_HOME="/Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/")
library(tabulizer)
Error: package or namespace load failed for ‘tabulizer’:
.onLoad failed in loadNamespace() for 'tabulizerjars', details:
call: NULL
error: .onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so
Reason: image not found
I have installed XLConnect package though my R studio. When I try to load the library I get the following error
> library(XLConnect)
Loading required package: XLConnectJars
Error: package or namespace load failed for ‘XLConnectJars’:
.onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so, 6): Library not loaded: #rpath/libjvm.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so
Reason: image not found
Error: package ‘XLConnectJars’ could not be loaded
I checked the /Library/Frameworks/R.framework/Versions/3.4/Resources/library folder and I am noticed all three mentioned libraries(XLConnect, XLConnectJars, rJava) already present.
I installed the rJava package but it's showing the following issue while using the library
library("rJava")
Error: package or namespace load failed for 'rJava':
.onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so, 6): Library not loaded: #rpath/libjvm.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so
Reason: image not found
I have read this post because I also have a Mac and nothing changed
rJava load error in RStudio/R after "upgrading" to OSX Yosemite
when I try to load xlsx library I get the following error
Loading required package: rJava
Error: package or namespace load failed for ‘rJava’:
.onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so, 6): Library not loaded: #rpath/libjvm.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so
Reason: image not found
Error: package ‘rJava’ could not be loaded
I cannot figure out what is wrong
library("rJava")
Error: package or namespace load failed for ‘rJava’:
.onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so, 6): Library not loaded: #rpath/libjvm.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so
Reason: image not found
does anyone know how to fix it?