Issues installing CausalImpact in R - r

I am trying to install the Causal Impact package in R and get the following warnings/errors:
install.packages("CausalImpact")
--- Please select a CRAN mirror for use in this session ---
Warning: failed to download mirrors file (cannot open URL 'https://cran.r-project.org/CRAN_mirrors.csv'); using local file 'C:/Users/nlwes/AppData/Local/Programs/R/R-4.2.0/doc/CRAN_mirrors.csv'
Warning: unable to access index for repository https://mirror.dogado.de/cran/src/contrib:
cannot open URL 'https://mirror.dogado.de/cran/src/contrib/PACKAGES'
Warning: unable to access index for repository https://mirror.dogado.de/cran/bin/windows/contrib/4.2:
cannot open URL 'https://mirror.dogado.de/cran/bin/windows/contrib/4.2/PACKAGES'
Warning messages:
1: In download.file(url, destfile = f, quiet = TRUE) :
URL 'https://cran.r-project.org/CRAN_mirrors.csv': status was 'SSL peer certificate or SSH remote key was not OK'
2: package ‘CausalImpact’ is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Anybody an idea how to fix the issue so I can install the package?

Related

Problem with installing RQDA package since it was archived 20/05/2020

I receive an error when installing RQDA on Windows 10.
I had run RQDA successfully, then a package wouldn't load and I deleted and tried to reinstall RQDA with these instructions: http://rqda.r-forge.r-project.org/.
Since then, I receive errors pointing towards RGtk2 and GTK+.
I tried loading RQDA both using the newest and older versions of R and RStudio. I tried on 3 different Windows computers.
Here is the link that shows the RQDA package was recently archived:
https://cran.r-project.org/web/packages/RQDA/index.html
The archive points towards requiring gWidgets, so I made sure the library of gWidgets loads successfully, which it does, as does library(gWidgetsRGtk2).
I also took care to install RTools4.0 for R 4.0.0 (https://cran.r-project.org/bin/windows/Rtools/).
I made sure GTK+ is on my PATH. (Path: %GTK_BASEPATH%\bin;) (GTK_PATH: C:\GTK).
I also tried loading RQDA and dependencies manually, but that's a never ending process.
Here is the error I receive:
Failed to load RGtk2 dynamic library, attempting to install it.
Please install GTK+ from http://ftp.gnome.org/pub/gnome/binaries/win64/gtk+/2.22/gtk+-bundle_2.22.1-20101229_win64.zip
If the package still does not load, please ensure that GTK+ is installed and that it is on your PATH environment variable
IN ANY CASE, RESTART R BEFORE TRYING TO LOAD THE PACKAGE AGAIN
Error in getOption("encoding") : Knotenstack-Überlauf
Zusätzlich: Warnmeldung:
Failed to load RGtk2 dynamic library, attempting to install it.
Please install GTK+ from http://ftp.gnome.org/pub/gnome/binaries/win64/gtk+/2.22/gtk+-bundle_2.22.1-20101229_win64.zip
If the package still does not load, please ensure that GTK+ is installed and that it is on your PATH environment variable
IN ANY CASE, RESTART R BEFORE TRYING TO LOAD THE PACKAGE AGAIN
Error: package or namespace load failed for 'RGtk2':
.onLoad in loadNamespace() für 'RGtk2' fehlgeschlagen, Details:
Aufruf: NULL
Fehler: Knotenstack-Überlauf
Fehler: Paket 'RGtk2' konnte nicht geladen werden
Zusätzlich: Warnmeldung:
Failed to load RGtk2 dynamic library, attempting to install it.
Ausführung angehalten
ERROR: lazy loading failed for package 'RQDA'
* removing 'C:/Users/haunschild/Documents/R/win-library/4.0/RQDA'
Warning in install.packages :
installation of package ‘RQDA_0.3-1.tar.gz’ had non-zero exit status
Trying to install RGtk2, I receive the following:
Error in inDL(x, as.logical(local), as.logical(now), ...) :
kann shared object 'C:/Users/haunschild/Documents/R/win-library/4.0/RGtk2/libs/x64/RGtk2.dll' nicht laden:
LoadLibrary failure: %1 ist keine zulässige Win32-Anwendung.
versuche URL 'http://ftp.gnome.org/pub/gnome/binaries/win64/gtk+/2.22/gtk+-bundle_2.22.1-20101229_win64.zip'
Content type 'application/zip' length 25830230 bytes (24.6 MB)
downloaded 24.6 MB
Learn more about GTK+ at http://www.gtk.org
If the package still does not load, please ensure that GTK+ is installed and that it is on your PATH environment variable
IN ANY CASE, RESTART R BEFORE TRYING TO LOAD THE PACKAGE AGAIN
Lade nötiges Paket: cairoDevice
Warnmeldungen:
1: Failed to load RGtk2 dynamic library, attempting to install it.
2: In dir.create(config_path, recursive = TRUE) :
'C:\Users\haunschild\Documents\R\win-library\4.0\RGtk2\gtk\x64\etc\gtk-2.0' existiert bereits
> detach("package:RGtk2", unload = TRUE)
Fehler: Paket ‘RGtk2’ wird von ‘gWidgetsRGtk2’ benötigt, wird deshalb nicht detached ("Is needed by gWidgetsRGTk2', is therefore not detached")
> library(RGtk2)
I also tried:
pkgFile <- "RQDA_0.3-1.tar.gz"
download.file(url = url, destfile = pkgFile)
# Install dependencies
install.packages(c("DBI","RSQLite","RGtk2","gWidgets","gWidgetsRGtk2"))
# Install package
install.packages(pkgs=pkgFile, type="source", repos=NULL)
# Delete package tarball
unlink(pkgFile)
An received the same RGTk2 error loop.
Any help would be greatly appreciated! Thanks!
I've got RQDA working in Windows after:
install.packages(c("gWidgets", "RGtk2", "igraph","plogr","bit","RSQLite"),depen=T)
To install "gWidgetsRGtk2" it was needed:
Download GTK+: http://ftp.gnome.org/pub/gnome/binaries/win32/gtk+/2.22/gtk+-bundle_2.22.1-20101227_win32.zip
Create an empty folder like c:\opt\
Unzip the content of that file in the folder created. You'll have something like c:\opt\gtk+-bundle_2.22.1-20101227_win32. The name of this folder can be changed.
Then add c:\opt\gtk+-bundle_2.22.1-20101227_win32\bin to your PATH
To add the bin folder to the PATH: right-click on "My Computer" and select "Properties", then "Advanced" tab, then "Environment Variables". Select the "PATH" variable and then "Edit" Add "c:\opt\gtk+-bundle_2.22.1-20101227_win32\bin" to the items in the PATH variable.
PS. Make sure you have no other versions of GTK+ in PATH.
So You can run the following code:
url <- "https://cran.r-project.org/src/contrib/Archive/gWidgetsRGtk2/gWidgetsRGtk2_0.0-86.tar.gz"
pkgFile <- "gWidgetsRGtk2_0.0-86.tar.gz"
download.file(url = url, destfile = pkgFile)
install.packages(pkgs=pkgFile, type="source", repos=NULL)
Once the "gWidgetsRGtk2" is installed, you can run the following command to install RQDA:
install.packages("RQDA",repos="http://R-Forge.R-project.org", type="source")
REFERENCES
https://rqda.r-forge.r-project.org/
https://github.com/krlmlr/r-appveyor/issues/48
We've been discussing this issue at : https://github.com/Ronggui/RQDA/issues/38
Some have reported success installing it and have given feedback on how to do it.
Some contributors are working to port RQDA to gWidgets2. May be one of their solutions works for you.
Good luck.
After I gave the answer above I tryed to install it my self and this was as far as I've got using RKWard 0.7.1b, on VM with MsWins10.
https://rkward.kde.org/
with R 3.6.3 in RKWard library (I had RQDA working before. So I uninstalled RKWard and deleted the library directory on C:\Program Files):
https://cran.r-project.org/bin/windows/base/old/3.6.3
and RTools35
https://cran.r-project.org/bin/windows/Rtools/history.html
also installed.
install.packages(c("gWidgets", "gWidgetsRGtk2", "RGtk2", "igraph","plogr","bit","RSQLite"),depen=T)
update.packages(ask = FALSE, checkBuilt = TRUE)
library(RGtk2)
Selected GTK+
Restarted RKWard
Installing ""RQDA_0.3-1.tar.gz", type = "source"", gave me an error: "Failed to load RGtk2 dynamic library, attempting to install it". But by chance, I just saw the post by #JanMarvin and it worked!!!
install.packages("https://cran.r-project.org/src/contrib/Archive/RQDA/RQDA_0.3-1.tar.gz", type = "source", INSTALL_opts = "--no-multiarch")
Then I ran:
update.packages(ask = FALSE, checkBuilt = TRUE)
And then
library (RQDA)
And it worked!!
If anyone could please refine it or give other suggestions as how to install it on MsWin, would be very much appreciated!
Thanks to #sjewo and #JanMarvin for their hard work!! porting this package to R 4.
These steps update the previous to install RQDA. I'm using Windows 10, and this code was run on April-17, 2021:
Use R version 3.6.3, 32 bits. If possible, also install Rstudio;
Run install.packages("gWidgets", repos="http://R-Forge.R-project.org");
Run install.packages(c("RGtk2","igraph","plogr","bit","RSQLite","cairoDevice"),depen=T);
Run library("RGtk2") . An error message will appear, asking you to install GTK+. Select it and press OK;
Restart R. Then run library("RGtk2") again to see if everything is OK;
Create the folder C:\GTK;
Go to https://download.gnome.org/binaries/win32/gtk+/2.22/ and download the file gtk+-bundle_2.22.1-20101227_win32.zip in C:\GTK;
Unpack the downloaded file in C:\GTK;
Go to the System environment and add to system variables C:\GTK\bin to your PATH;
Restart Windows;
Run the following code:
url <- "https://cran.r-project.org/src/contrib/Archive/gWidgetsRGtk2/gWidgetsRGtk2_0.0-86.1.tar.gz"
pkgFile <- "gWidgetsRGtk2_0.0-86.1.tar.gz"
download.file(url = url, destfile = pkgFile)
install.packages(pkgs=pkgFile, type="source", repos=NULL);
Finally, run install.packages("RQDA",repos="http://R-Forge.R-project.org", type="source");
Enjoy!!!
FWIW, I've written a package called RQDAassist that I and my team use to help with RQDA, including installing the CRAN archive on R 4.0. Check it out and if there's any problem, do post an issue. To do the step-wise installation of RQDA
RQDAassist::install()
That's it.
Also, I noticed that active development is ongoing by RQDA maintainers, so I expect (hope) this issue to be resolved soon.

Sentiment Analysis using R: github 'okugami79/sentiment140' package installation error

I wish to install sentiment140 github package by developer okugami79. I wrote following script for the same:
install.packages("githubinstall")
require(devtools)
library(githubinstall)
install_github('sentiment140', 'okugami79')
library(sentiment)
But it threw an error:
Installation failed: Failed to connect to raw.githubusercontent.com port 443: Timed out
Warning message: Username parameter is deprecated. Please use okugami79/sentiment140
Then I modified installation statement as follows:
install_github('okugami79/sentiment140')
Still it threw an error:
Installation failed: Failed to connect to raw.githubusercontent.com port 443: Timed out
I checked for solution on stackoverflow through following link:
Timeout R package installation from Github
Here, I found a way to install github package by downloading package zip file and installing it in R using:
install.packages("/address/to/zip-package", repos = NULL, type="source")
This also prompts error:
Warning: invalid package 'sentiment-master'
Error: ERROR: no packages specified
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-33~1.3/bin/x64/R" CMD INSTALL -l "C:\Users\u257449\Documents\R\win-library\3.3" "sentiment-master"' had status 1
Warning in install.packages : installation of package ‘sentiment-master’ had non-zero exit status
How should I go about installing required package from github in R ? Your valuable advice/solution is requested.
Thank You !
Just a straightforward pair of functions installed this package from Github source for me on both Windows and OSX.
install.packages("devtools")
devtools::install_github('okugami79/sentiment140')
There may be something unusual about your system setup, in which case, it would be helpful to have your session information. You can get that by entering sessionInfo().
However, note that this package you are looking to install is over 4 years old per the description file on Github. A lot of work has gone into other packages that work with natural language processing and sentiment analysis. The CRAN Task View for Natural Language Processing is a good place to start for an overview of many of these packages that can be installed directly from CRAN. There are many resources that are better maintained. For example, here's a chapter on sentiment analysis using the tidytext package.

how to install R packages from artifactory remote repo and pass credentials

I'm trying to to install R packages from artifactory and also i need to authenticate but im not sure how i can pass credentials to the install.packages in R :
the below is what i tried but it doesnt work, however when i tried to use curl to query for the same file it works :
install.packages('broom',repos="http://user:pass#artifactory-url:port/artifactory/cran/",method=curl,verbose="true")
output :
Warning: unable to access index for repository http://user:pass#artifactory-url:port/artifactory/cran/src/contrib:
cannot open URL 'http://user:pass#artifactory-url:port/artifactory/cran/src/contrib/PACKAGES'
Warning message:
package ‘broom’ is not available (for R version 3.3.2)
Artifactory does not support R Packages, you're more then welcome to suggest a feature request

R Package installation Issue

I'm not able to install any packages in R. I tried in all versions of R starting from 3.2.2 till 3.2.4(revised), but I get the same error. It seems like a proxy issue to me as I'm connected to my college firewall. I was able to install the packages when I'm connected to my home network. Can you please guide me to resolve this issue.?
Here are the error messages
> chooseCRANmirror()
Error in download.file(url, destfile = f, quiet = TRUE) :
cannot open URL 'https://cran.r-project.org/CRAN_mirrors.csv'
In addition: Warning message:
In download.file(url, destfile = f, quiet = TRUE) :
InternetOpenUrl failed: 'The server name or address could not be resolved'
> install.packages("ggplot2")
Installing package into ‘C:/Users/HP/Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)
Warning: unable to access index for repository https://cran.rstudio.com/src/contrib
Warning: unable to access index for repository
Warning: unable to access index for repository
Warning: unable to access index for repository
Warning message:
package ‘ggplot2’ is not available (for R version 3.2.2)
This is the same problem I was also facing while installing any packages. The main reason what I think is that your R session can't connect to the files path on Cran server.
What I did was just manually go to the Cran website and download the windows release for that particular package. Now unzip the files and manually paste the folder into your library folder of R.
The library folder path will be something like this:
C:\Program Files\R\R-3.2.3\library
Now go to your R console and load it with library(package name).
You can now use your package.
Simply use HTTP mirror instead of HTTPS ones.
To change mirror go to "Packages menu" -> "Set CRAN mirror" -> "(HTTP mirrors)" -> select any
Thanks for your valuable feedback guys. The solution to this problem drove me crazy. I have set my proxy settings according to my college network in MOZILLA, however, I have not set the same for IE. I guess, R downloads the packages based on IE settings, which was not configured. After setting the proxy to connect to the internet, I was able to download the packages without any issues.
Figured this out after trying all your solutions, but at last it was this silly thing that worked.
Thanks for all your time and suggestions.
you can reset and restore your internet connection (for windows and your default explorer),The problem will be solved.
To fix:
Uncheck the 'use secure download method' checkbox in Rstudio global options.
Restart internet then restart Rstudio
utils:::menuInstallPkgs()
--- Please select a CRAN mirror for use in this session ---
Warning: unable to access index for repository https://ftp.iitm.ac.in/cran/src/contrib:
cannot open URL 'https://ftp.iitm.ac.in/cran/src/contrib/PACKAGES'
Error in install.packages(NULL, .libPaths()[1L], dependencies = NA, type = type) :
no packages were specified

Connecting R with Vertica Database

I have installed the Vertica R language version (.rpm) file. But still I am unable to create libraries.
Please let me know how to install JDBC (.jar) file and also install.package (RJDBC).
It is showing this error...
Warning in install.packages("RJDBC", dep = TRUE) :
'lib = "C:/Program Files/R/R-3.0.2/library"' is not writable
--- Please select a CRAN mirror for use in this session ---
Warning: unable to access index for repository http://ftp.iitm.ac.in/cran/bin/windows/contrib/3.0
Warning message:
package ‘RJDBC’ is not available (for R version 3.0.2)
Please help me with the procedure how to setup R with verica.
Thanks
Sameer
If you're just trying to get connected via JDBC, see this answer: Connect R and Vertica using RODBC

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