I can install R and RStudio with no problem from the RHEL 8.5 CLI.
However, when I try to automate the installation process using a Dockerfile following the instructions at https://docs.rstudio.com/resources/install-r-source/, I get the following error when trying to pass the value defined in my "export R_VERSION=4.0.2" instruction:
[ 6/11] **RUN yum install -y R-${R_VERSION}-1-1.x86_64.rpm --nogpgcheck**:
#9 0.957 Last metadata expiration check: 0:00:04 ago on Fri Mar 25 19:22:44 2022.
#9 1.066 Can not load RPM file: R--1-1.x86_64.rpm.
#9 1.071 Could not open: R--1-1.x86_64.rpm
executor failed running [/bin/sh -c yum install -y R-${R_VERSION}-1-1.x86_64.rpm --nogpgcheck]: exit code: 1
Help is appreciated.
sh-4.4# **yum install -y R-${R_VERSION}-1-1.x86_64.rpm --nogpgcheck**
Last metadata expiration check: 0:02:02 ago on Fri Mar 25 15:56:49 2022.
Dependencies resolved.
=============================================================================================================================================================== Package Architecture Version Repository Size
===============================================================================================================================================================Installing:
R-4.0.2 x86_64 1-1 #commandline 58 M
Upgrading:
glibc x86_64 2.28-164.el8_5.3 ubi-8-baseos 3.6 M
glibc-common x86_64 2.28-164.el8_5.3 ubi-8-baseos 1.3 M
glibc-minimal-langpack x86_64 2.28-164.el8_5.3 ubi-8-baseos 58 k
......
...........
.............
..................
**Complete!**
sh-4.4# r
sh: r: command not found
sh-4.4# /opt/R/${R_VERSION}/bin/R --version
R version 4.0.2 (2020-06-22) -- "Taking Off Again"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
https://www.gnu.org/licenses/.
Related
I am sure this is a trivial question, but I am trying to install multiple R versions in Linux. I am not using R studio server pro and am instead using the free R studio server. I followed this documentation to install R but got errors when I attempted to locate it. However, when I run a command to see what version of R is installed, there is no error.
R is installed!
(base) noah#noah-VirtualBox:/opt/R/4.1.3$ /opt/R/4.1.3/bin/R --version
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
https://www.gnu.org/licenses/.
Attempts
(base) noah#noah-VirtualBox:/opt/R/4.1.3$ R
Command 'R' not found, but can be installed with:
sudo apt install r-base-core
(base) noah#noah-VirtualBox:/opt/R/4.1.3$ which R
(base) noah#noah-VirtualBox:/opt/R/4.1.3$
Steps to reproduce
export R_VERSION=4.1.3
curl -O https://cran.rstudio.com/src/base/R-4/R-${R_VERSION}.tar.gz
tar -xzvf R-${R_VERSION}.tar.gz
cd R-${R_VERSION}
# Build and install R
./configure \
--prefix=/opt/R/${R_VERSION} \
--enable-memory-profiling \
--enable-R-shlib \
--with-blas \
--with-lapack
make
sudo make install
# Verify R installation
/opt/R/${R_VERSION}/bin/R --version
# Create a symlink to R
sudo ln -s /opt/R/${R_VERSION}/bin/R /usr/local/bin/R
sudo ln -s /opt/R/${R_VERSION}/bin/Rscript /usr/local/bin/Rscript
# Export path so Rstudio can find it
export RSTUDIO_WHICH_R='/opt/R/4.1.3/bin'
You are overcomplicating it. Just install in, say,
/opt/R/4.2.0/
/opt/R/4.1.2/
/opt/R/4.0.5/
and then either set the $PATH to the bin/ directory in the version you want, or call R directly. It is what pretty much exactly what many of us have done with two versions of R (i.e. R-release and R-devel):
$ R --version | head -1
R version 4.2.0 (2022-04-22) -- "Vigorous Calisthenics"
$
$ /usr/lib/R/bin/R --version | head -1
R version 4.2.0 (2022-04-22) -- "Vigorous Calisthenics"
$
$ /usr/local/lib/R-devel/bin/R --version | head -1
R Under development (unstable) (2022-05-24 r82398) -- "Unsuffered Consequences"
$
The first two are the same as that is my 'default' version. The third is my one alternate. And that is all there is to it.
If you add /usr/local/bin to your $PATH variable you would have been able to launch R, if it was not already present.
You could add it to .bashrc in your home directory
echo "export path=\"${PATH}:/usr/local/bin\"" |tee -a ~/.bashrc
Links for installing R from package, Ubuntu / Debian, RHEL 9, RHEL 8, RHEL/CentOS7
https://docs.posit.co/resources/install-r/
Also see
(Optional) Install multiple versions of R, on the same page.
i have the problem that my raspberry has a version of wkhtmltopdf installed that is not qt patched. But my research says that this is supposed to be fixed in version 12.6 and exactly this version I have installed.
I just installed wkhtmltopdf with apt-get install wkhtmltopdf.
What else can it be?
Here's my Linux Version:
Linux raspberrypie 5.15.32-v8+ #1538 SMP PREEMPT Thu Mar 31 19:40:39 BST 2022 aarch64 GNU/Linux
Here's my wkhtmltopdf Version:
wkhtmltopdf --version
wkhtmltopdf 0.12.6
Here's the output if i want to add a footer or header:
wkhtmltopdf http://google.com --footer-center 'test' Test.pdf
The switch --footer-center, is not support using unpatched qt, and will be ignored.Loading page (1/2)
Printing pages (2/2)
Done
cat /etc/os-release
PRETTY_NAME="Debian GNU/Linux 11 (bullseye)"
NAME="Debian GNU/Linux"
VERSION_ID="11"
VERSION="11 (bullseye)"
VERSION_CODENAME=bullseye
ID=debian
HOME_URL="https://www.debian.org/"
SUPPORT_URL="https://www.debian.org/support"
BUG_REPORT_URL="https://bugs.debian.org/"
I am trying to set up Rstudio on an Ubuntu cloud server (gcloud). I currently have version R-3.4.4 on RStudio, but would like to upgrade. The issue is, I am unable to.
I am running the following version of Ubuntu.
name#sc1:~$ lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 18.04.5 LTS
Release: 18.04
Codename: bionic
I installed the RStudio server for Ubuntu 18 as suggested here: https://www.rstudio.com/products/rstudio/download-server/debian-ubuntu/
So essentially running to install the server:
sudo apt-get install gdebi-core
wget https://download2.rstudio.org/server/bionic/amd64/rstudio-server-1.4.1717-amd64.deb
sudo gdebi rstudio-server-1.4.1717-amd64.deb
Checking the version of R Studio I have:
sudo -i R
Output:
name#sc1:~$ sudo -i R
R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
However, this is what pops up in my RStudio.
Anyone have ideas for what I'm doing wrong? How can I upgrade my package?
Furthermore, in my /home/user/R/x86_64-pc-linux-gnu-library directory, I have an R-3.4 folder, which is confusing…
Turns out that after I installed R 4.0, I had to restarted the VM and that seemed to work. Unclear why this is, but at least it worked!
I'm trying to install gifski which is a dependency for gganimate.
I get this error.
------------------ RUST COMPILER NOT FOUND --------------------
Cargo was not found on the PATH. Please install cargo / rustc:
- yum install cargo (Fedora/CentOS)
- apt-get install cargo (Debian/Ubuntu)
- brew install rustc (MacOS)
Alternatively install Rust from: <https://www.rust-lang.org>
---------------------------------------------------------------
The yum install cargo command didn't work, so I installed Rust with
curl https://sh.rustup.rs -sSf | sh
The installation prompt said I needed to add $HOME/.cargo/bin to my path environment variable, so I tried this.
$ source $HOME/.cargo/env
$ export PATH=$PATH:$HOME/.cargo/bin
$ export PATH=$PATH:/.cargo/bin
$ export PATH=$HOME/.cargo/bin
I reset my machine and I continue to receive the same error.
> sessionInfo()
R version 3.5.3 (2019-03-11)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Amazon Linux AMI 2018.03
I'm trying up grade R (currently 3.1.3) to the latest using
sudo apt-get install r-base-dev
and get the message that I'm already on the latest:
Reading package lists... Done
Building dependency tree
Reading state information... Done
r-base-dev is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
Here is my current version
R version 3.1.3 (2015-03-09) -- "Smooth Sidewalk"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
So I am clearly not on the latest version.