Succinctly Reproducing the following graph with R and ggplot2 - r

Question

I borrowed the R code from the link and produced the following graph:
Using the same idea, I tried with my data as follows:
library(tidyverse)
library(tidytable)
library(ggforce)
library(ggtext)
library(camcorder)
library(bibliometrix)
library(bibliometrixData)
data(management)
M <- metaTagExtraction(management, "AU_CO")
CO <-
tidytable(
Country = unlist(strsplit(M$AU_CO,";"))
, year = rep(M$PY, lengths(strsplit(M$AU_CO,";")))
, nAuPerArt = rep(lengths(strsplit(M$AU_CO,";")),lengths(strsplit(M$AU_CO,";")))
)
df0 <-
CO %>%
summarise.(
frequency = length(Country)
, frequencyFractionalized = sum(1/nAuPerArt)
, .by = c(Country, year)
) %>%
arrange.(Country, year)
df1 <-
df0 %>%
mutate.(
min_year = min(year)
, n_total = sum(frequency)
, .by = Country
) %>%
mutate.(Country = fct_reorder(Country, min_year)) %>%
count(Country, n_total, min_year, year) %>%
mutate.(
a_deg = as.numeric(Country) * 2.7 + 8.5
, a = a_deg * pi/180
, x = -(year - min(year) + 10) * cos(a + pi/2.07)
, y = (year - min(year) + 10) * sin(a + pi/2.07)
, label_a = ifelse(a_deg > 180, 270 - a_deg, 90 - a_deg)
, h = ifelse(a_deg > 180, 1, 0)
, label = ifelse(h == 0,
paste0(Country, " <span style = 'color:darkorange;'>(", n_total, ")</span>"),
paste0(" <span style = 'color:darkorange;'>(", n_total, ")</span>", Country))
) %>%
arrange.(as.character(Country), year)
df1
# df1 %>% view()
Years <-
tidytable(
r = seq(
from = 10
, to = 280
, length.out = 12
)
, l = seq(from = min(df0$year), to = max(df0$year), by = 3)
) %>%
mutate.(
lt = ifelse(row_number.() %% 2 == 0, "dotted", "solid")
)
Years
f1 = "Porpora"
gg_record(dir = "temp", device = "png", width = 10, height = 11, units = "in", dpi = 320)
ggplot(data = df1) +
# Purple points
geom_point(data = df1, aes(x = x, y = y, size = n * 10), shape = 21, stroke = 0.15, fill = "purple") +
# Year circles
geom_circle(
data = Years
, aes(x0 = 0, y0 = 0, r = r, linetype = lt), size = 0.08, color = "grey50"
) +
# Year labels
geom_label(
data = Years
, aes(x = 0, y = r, label = l), size = 3, family = f1, label.padding = unit(0.25, "lines"), label.size = NA, fill = "grey95", color = "grey70") +
# Orange points (totals)
geom_point(aes(x = -290 * cos(a + pi/2.07), y = 290 * sin(a + pi/2.07), size = n_total), stat = "unique", shape = 21, stroke = 0.5, fill = "orange") +
# Family names and totals
geom_richtext(aes(x = -305 * cos(a + pi/2.07),
y = 305 * sin(a + pi/2.07),
label = label,
angle = label_a,
hjust = h), stat = "unique", Country = f1, size = 3.5,
fill = NA, label.color = NA, color = "#0b5029") +
# Annotations
annotate("text", 0, 293, label = "Total", Country = f1, color = "orange") +
scale_size_continuous(range = c(0, 8)) +
scale_color_viridis_c(option = "turbo") +
coord_fixed(clip = "off", xlim = c(-400, 400)) +
# labs(
# caption = "<span style = 'font-size:30px;'>Taxonomic publications, 1757-2021</span><br>
# Publications by family and year <span style = 'color:purple;'>(purple circles)</span>and total publications by family <span style = 'color:darkorange;'>(orange circles and text)</span><br>
# <span style = 'color:black;'>Source: World Spider Catalog - Graphic: Georgios Karamanis</span>"
# ) +
theme_void() +
theme(
legend.position = "none",
plot.background = element_rect(fill = "grey95", color = NA),
plot.margin = margin(0, 20, 20, 20),
plot.caption = element_markdown(family = f1, hjust = 0.5, margin = margin(100, 0, -100, 0), size = 14, lineheight = 1.4, color = "#0b5029")
)
which produces the following graph
However, I'm facing two issues with the produced graph.
How to get pink points aligned correctly?
How to use whole circle for country names?
Edited
Looking for more succinct and reproducible code which can be used for different data sets. Preferably looking for a generic function which can handle different data sets.

Answer 1

You can do calculations within a function for the x and y values to construct the ggplot which extends the circle all the way round and gives labels correct heights.
I've adapted a function to work with other datasets. This takes a dataset in a tidy format, with:
a 'year' column
one row per 'event'
a grouping variable (such as country)
I've used Nobel laurate data from here as an example dataset to show the function in practice. Data setup:
library(tidyverse)
library(ggforce)
library(ggtext)
nobel <- read_csv("archive.csv")
# Filtering in this example to create a plottable dataset
nobel_filt <- nobel %>%
mutate(country = fct_lump_n(factor(`Birth Country`), n = 50)) %>%
filter(country != "Other")
nobel_filt
#> # A tibble: 883 x 19
#> Year Category Prize Motivation `Prize Share` `Laureate ID` `Laureate Type`
#> <dbl> <chr> <chr> <chr> <chr> <dbl> <chr>
#> 1 1901 Chemistry The ~ "\"in rec~ 1/1 160 Individual
#> 2 1901 Literature The ~ "\"in spe~ 1/1 569 Individual
#> 3 1901 Medicine The ~ "\"for hi~ 1/1 293 Individual
#> 4 1901 Peace The ~ <NA> 1/2 462 Individual
#> 5 1901 Peace The ~ <NA> 1/2 463 Individual
#> 6 1901 Physics The ~ "\"in rec~ 1/1 1 Individual
#> 7 1902 Chemistry The ~ "\"in rec~ 1/1 161 Individual
#> 8 1902 Literature The ~ "\"the gr~ 1/1 571 Individual
#> 9 1902 Medicine The ~ "\"for hi~ 1/1 294 Individual
#> 10 1902 Peace The ~ <NA> 1/2 464 Individual
#> # ... with 873 more rows, and 12 more variables: Full Name <chr>,
#> # Birth Date <date>, Birth City <chr>, Birth Country <chr>, Sex <chr>,
#> # Organization Name <chr>, Organization City <chr>,
#> # Organization Country <chr>, Death Date <date>, Death City <chr>,
#> # Death Country <chr>, country <fct>
This function will then take the dataframe as an argument, along with the names of the column to group by and the column to mark time periods by. It's not super-succinct, as there is a lot of data processing going on. But hopefully within a function it's tidier.
circle_plot <- function(data, group_var, time_var) {
df_full <-
data %>%
select(group = {{group_var}}, year = {{time_var}}) %>%
mutate(group = factor(group),
group = fct_reorder(group, year, .fun = min),
order = as.numeric(group))
year_vals <-
tibble(year = as.character(seq(min(df_full$year), max(df_full$year), 1)),
level = 1 + 1:length(year))
y_vals <- year_vals %>%
bind_rows(tribble(~ year, ~ level,
"total", max(year_vals$level) + 5,
"title", max(year_vals$level) + 10
))
year_labs <-
tibble(year = as.character(floor(seq(
min(df_full$year), max(df_full$year), length.out = 10
)))) %>%
left_join(y_vals, by = "year")
x_len <- max(df_full$order)
df_ang <- df_full %>%
mutate(year = as.character(year)) %>%
count(group, order, year) %>%
left_join(y_vals, by = "year") %>%
mutate(a_deg = order * 350/x_len + 5,
x = - level * cos(a_deg * pi/180 + pi/2.07),
y = level * sin(a_deg * pi/180 + pi/2.07))
df_lab <- df_ang %>%
group_by(group, a_deg) %>%
summarise(n_total = n()) %>%
mutate(
group_name = str_trunc(as.character(group), 30),
label_a = ifelse(a_deg > 180, 270 - a_deg, 90 - a_deg),
h = ifelse(a_deg > 180, 1, 0),
label = ifelse(
h == 0,
paste0(
group_name,
" <span style = 'color:darkorange;'>(",
n_total,
")</span>"
),
paste0(
"<span style = 'color:darkorange;'>(",
n_total,
")</span> ",
group_name
)
),
year = "title"
) %>%
left_join(y_vals, by = "year") %>%
mutate(
x = -level * cos(a_deg * pi / 180 + pi / 2.07),
y = level * sin(a_deg * pi / 180 + pi / 2.07),
total_x = -(level - 5) * cos(a_deg * pi / 180 + pi / 2.07),
total_y = (level - 5) * sin(a_deg * pi / 180 + pi / 2.07)
)
ggplot() +
geom_circle(
data = year_labs,
aes(
x0 = 0,
y0 = 0,
r = level
),
size = 0.08,
color = "grey50"
) +
geom_label(
data = year_labs,
aes(x = 0, y = level, label = year),
size = 3,
label.padding = unit(0.25, "lines"),
label.size = NA,
fill = "grey95",
color = "grey70"
) +
geom_point(
data = df_ang,
aes(x = x, y = y, size = n),
shape = 21,
stroke = 0.15,
fill = "purple"
) +
geom_point(
data = df_lab,
aes(total_x, total_y,
size = n_total
),
stat = "unique",
shape = 21,
stroke = 0.5,
fill = "orange"
) +
geom_richtext(
data = df_lab,
aes(x, y,
label = label,
angle = label_a,
hjust = h
),
stat = "unique",
size = 4,
fill = NA,
label.color = NA,
color = "#0b5029"
) +
annotate(
"text",
0,
y = y_vals[y_vals$year=="total",]$level,
label = "Total",
color = "orange",
size = 4,
vjust = 0
) +
scale_size_continuous(range = c(1, 9)) +
scale_color_viridis_c(option = "turbo") +
coord_fixed(clip = "off", xlim = c(-120, 120)) +
theme_void() +
theme(
legend.position = "none",
plot.background = element_rect(fill = "grey95", color = NA),
plot.margin = margin(100, 180, 150, 180),
)
}
circle_plot(nobel_filt, `Birth Country`, Year)
# ggsave("test.png", height = 10, width = 10)
This creates the following graph:
The biggest headache (as you can see here) will be changing margins to accommodate long labels and exporting plot sizes which fit the sizes of text/numbers of year circles neatly. This might have to be experimented with across each plot. You can adapt the margin call within the function to a sensible default, or add a further theme element to the function call like so:
circle_plot(nobel_filt, `Birth Country`, Year) +
theme(plot.margin = margin(80, 150, 120, 150))
Hope that helps!
Created on 2021-12-27 by the reprex package (v2.0.1)