Can you patch an arbitrary resource with no base via kustomize? - patch

Question

I've been trying to patch a Deployment, declared and applied by a kops addon (Ebs drivers).
Unfortunately, after trying the variety of patching strategies, it seems that I am unable to patch a resource that doesn't have a base declared in my folder structure.
Note that I'm using FluxCD on top for reconciliation, which doesn't see any change for this resource when pushing the patch.
Here is an extract of the deployment automatically generated and applied by Kops that I want to change :
apiVersion: apps/v1
kind: Deployment
metadata:
labels:
addon.kops.k8s.io/name: aws-ebs-csi-driver.addons.k8s.io
addon.kops.k8s.io/version: 1.0.0-kops.1
app.kubernetes.io/instance: aws-ebs-csi-driver
app.kubernetes.io/managed-by: kops
app.kubernetes.io/name: aws-ebs-csi-driver
app.kubernetes.io/version: v1.0.0
k8s-addon: aws-ebs-csi-driver.addons.k8s.io
**super: unpatched**
name: ebs-csi-controller
namespace: kube-system
My kustomization file :
apiVersion: kustomize.config.k8s.io/v1beta1
kind: Kustomization
namespace: flux-system
patches:
- target:
kind: Deployment
name: ebs-csi-controller
namespace: kube-system
path: patch-ebs.yaml
and the actual patch-ebs.yaml:
apiVersion: apps/v1
kind: Deployment
metadata:
name: ebs-csi-controller
namespace: kube-system
labels:
super: patched
Also tried with a Json patch patch-ebs.json :
[
{"op": "replace", "path": "/metadata/labels/super", "value": "Patched"}
]
Running a kustomize build doesn't generate any output ;
Creating a deployment file which is refered as a resource/base generate a proper patch that can be applied.
Is it a limitation of Kustomize, or am I missing something along the lines?
Thanks for your help !

Answer 1

Kustomize depends on the referenced resources to be included as resources, or to be generated using the built in generators for them to be patched, or mutated in any way.
One caveat would be that you could include a resource in your kustomization that matches your existing ebs-csi-controller Deployment and Kustomize will build a resource that can be applied on top of your existing deployment.

Answer 2

From what I can see you are trying to patch a kind of addon (managed by kops controller). Try this one from FluxCD docs
So, your case will be like patch-ebs.yaml:
apiVersion: apps/v1
kind: Deployment
metadata:
annotations:
kustomize.toolkit.fluxcd.io/prune: disabled
kustomize.toolkit.fluxcd.io/ssa: merge
name: ebs-csi-controller
namespace: kube-system
labels:
super: patched
and kustomization file:
apiVersion: kustomize.config.k8s.io/v1beta1
kind: Kustomization
namespace: kube-system
resources:
- patch-ebs.yaml