Why can't I download tidycensus? - r

When I try download the package tidycensus I get the following error:
> install.packages("tidycensus")
Installing package into ‘C:/Users/krosi/OneDrive/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependencies ‘ellipsis’, ‘lifecycle’, ‘tidyselect’, ‘vctrs’, ‘pillar’, ‘dplyr’, ‘rlang’
There are binary versions available but the source versions are later:
binary source needs_compilation
ellipsis 0.3.0 0.3.2 TRUE
lifecycle 0.2.0 1.0.0 FALSE
tidyselect 1.0.0 1.1.1 TRUE
vctrs 0.2.4 0.3.8 TRUE
pillar 1.4.3 1.6.1 FALSE
dplyr 0.8.5 1.0.6 TRUE
rlang 0.4.5 0.4.11 TRUE
tidycensus 0.9.9.2 1.0 FALSE
Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/ellipsis_0.3.0.zip'
Content type 'application/zip' length 44220 bytes (43 KB)
downloaded 43 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tidyselect_1.0.0.zip'
Content type 'application/zip' length 242507 bytes (236 KB)
downloaded 236 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/vctrs_0.2.4.zip'
Content type 'application/zip' length 1018801 bytes (994 KB)
downloaded 994 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/dplyr_0.8.5.zip'
Content type 'application/zip' length 3256479 bytes (3.1 MB)
downloaded 3.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/rlang_0.4.5.zip'
Content type 'application/zip' length 1115838 bytes (1.1 MB)
downloaded 1.1 MB
package ‘ellipsis’ successfully unpacked and MD5 sums checked
package ‘tidyselect’ successfully unpacked and MD5 sums checked
package ‘vctrs’ successfully unpacked and MD5 sums checked
package ‘dplyr’ successfully unpacked and MD5 sums checked
package ‘rlang’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\krosi\AppData\Local\Temp\RtmpI1FQMN\downloaded_packages
installing the source packages ‘lifecycle’, ‘pillar’, ‘tidycensus’
trying URL 'https://cran.rstudio.com/src/contrib/lifecycle_1.0.0.tar.gz'
Content type 'application/x-gzip' length 83389 bytes (81 KB)
downloaded 81 KB
trying URL 'https://cran.rstudio.com/src/contrib/pillar_1.6.1.tar.gz'
Content type 'application/x-gzip' length 1111747 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/src/contrib/tidycensus_1.0.tar.gz'
Content type 'application/x-gzip' length 2115609 bytes (2.0 MB)
downloaded 2.0 MB
* installing *source* package 'lifecycle' ...
** package 'lifecycle' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 0.4.5 is being loaded, but >= 0.4.10 is required
ERROR: lazy loading failed for package 'lifecycle'
* removing 'C:/Users/krosi/OneDrive/Documents/R/win-library/3.5/lifecycle'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘lifecycle’ had non-zero exit status
* installing *source* package 'tidycensus' ...
** package 'tidycensus' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'dplyr' 0.8.5 is being loaded, but >= 1.0.0 is required
ERROR: lazy loading failed for package 'tidycensus'
* removing 'C:/Users/krosi/OneDrive/Documents/R/win-library/3.5/tidycensus'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘tidycensus’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'pillar'
* removing 'C:/Users/krosi/OneDrive/Documents/R/win-library/3.5/pillar'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘pillar’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\krosi\AppData\Local\Temp\RtmpI1FQMN\downloaded_packages’
Here is my sessioninfo:
> sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.5.1 assertthat_0.2.1 Matrix_1.2-14 cli_2.0.2 tools_3.5.1 glue_1.4.0 rstudioapi_0.11 yaml_2.2.0 crayon_1.3.4
[10] fansi_0.4.0 grid_3.5.1 lattice_0.20-35
Any ideas?

Restart R and reinstall the package in a clean session: you currently have packages loaded which consequently can’t be reloaded in a newer version.

Related

tidyverse in R: Cannot load tidyverse package [duplicate]

I am trying to install the tidyverse package and not being able to do it.
1-tried via Packages -> Install
2-tried from console-> install.packages("tidyverse")
Gives errors as below and therefore not loading the lirary
> library(tidyverse)
Error in library(tidyverse) : there is no package called ‘tidyverse’
Console Errors:
****************************************************************************************
> install.packages("tidyverse")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/arikl/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependencies ‘lifecycle’, ‘tidyselect’, ‘vctrs’, ‘gargle’, ‘glue’, ‘rematch2’, ‘scales’, ‘ellipsis’, ‘vroom’, ‘tzdb’, ‘broom’, ‘cli’, ‘dbplyr’, ‘dplyr’, ‘dtplyr’, ‘googledrive’, ‘googlesheets4’, ‘ggplot2’, ‘haven’, ‘hms’, ‘jsonlite’, ‘lubridate’, ‘magrittr’, ‘modelr’, ‘pillar’, ‘readr’, ‘rlang’, ‘rvest’, ‘tibble’, ‘tidyr’
There are binary versions available but the source versions
are later:
binary source needs_compilation
lifecycle 0.2.0 1.0.1 FALSE
tidyselect 1.0.0 1.1.1 TRUE
vctrs 0.2.4 0.3.8 TRUE
gargle 0.4.0 1.2.0 FALSE
glue 1.4.0 1.4.2 TRUE
rematch2 2.1.0 2.1.2 FALSE
scales 1.1.0 1.1.1 FALSE
ellipsis 0.3.0 0.3.2 TRUE
vroom 1.2.0 1.5.5 TRUE
broom 0.5.6 0.7.9 FALSE
cli 2.0.2 3.0.1 TRUE
dbplyr 1.4.3 2.1.1 FALSE
dplyr 0.8.5 1.0.7 TRUE
dtplyr 1.0.1 1.1.0 FALSE
googledrive 1.0.0 2.0.0 FALSE
googlesheets4 0.1.1 1.0.0 FALSE
ggplot2 3.3.0 3.3.5 FALSE
haven 2.2.0 2.4.3 TRUE
hms 0.5.3 1.1.1 FALSE
jsonlite 1.6.1 1.7.2 TRUE
lubridate 1.7.8 1.7.10 TRUE
magrittr 1.5 2.0.1 TRUE
modelr 0.1.6 0.1.8 FALSE
pillar 1.4.3 1.6.3 FALSE
readr 1.3.1 2.0.2 TRUE
rlang 0.4.5 0.4.11 TRUE
rvest 0.3.5 1.0.1 FALSE
tibble 3.0.1 3.1.4 TRUE
tidyr 1.0.2 1.1.4 TRUE
tidyverse 1.3.0 1.3.1 FALSE
Binaries will be installed
Package which is only available in source form, and may need
compilation of C/C++/Fortran: ‘tzdb’
These will not be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tidyselect_1.0.0.zip'
Content type 'application/zip' length 242507 bytes (236 KB)
downloaded 236 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/vctrs_0.2.4.zip'
Content type 'application/zip' length 1018801 bytes (994 KB)
downloaded 994 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/glue_1.4.0.zip'
Content type 'application/zip' length 157284 bytes (153 KB)
downloaded 153 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/ellipsis_0.3.0.zip'
Content type 'application/zip' length 44220 bytes (43 KB)
downloaded 43 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/vroom_1.2.0.zip'
Content type 'application/zip' length 1665604 bytes (1.6 MB)
downloaded 1.6 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/cli_2.0.2.zip'
Content type 'application/zip' length 397120 bytes (387 KB)
downloaded 387 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/dplyr_0.8.5.zip'
Content type 'application/zip' length 3256479 bytes (3.1 MB)
downloaded 3.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/haven_2.2.0.zip'
Content type 'application/zip' length 1050152 bytes (1.0 MB)
downloaded 1.0 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/jsonlite_1.6.1.zip'
Content type 'application/zip' length 1164207 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/lubridate_1.7.8.zip'
Content type 'application/zip' length 1583751 bytes (1.5 MB)
downloaded 1.5 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/magrittr_1.5.zip'
Content type 'application/zip' length 155738 bytes (152 KB)
downloaded 152 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/readr_1.3.1.zip'
Content type 'application/zip' length 1588558 bytes (1.5 MB)
downloaded 1.5 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/rlang_0.4.5.zip'
Content type 'application/zip' length 1115838 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tibble_3.0.1.zip'
Content type 'application/zip' length 407904 bytes (398 KB)
downloaded 398 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tidyr_1.0.2.zip'
Content type 'application/zip' length 1297802 bytes (1.2 MB)
downloaded 1.2 MB
package ‘tidyselect’ successfully unpacked and MD5 sums checked
package ‘vctrs’ successfully unpacked and MD5 sums checked
package ‘glue’ successfully unpacked and MD5 sums checked
package ‘ellipsis’ successfully unpacked and MD5 sums checked
package ‘vroom’ successfully unpacked and MD5 sums checked
package ‘cli’ successfully unpacked and MD5 sums checked
package ‘dplyr’ successfully unpacked and MD5 sums checked
package ‘haven’ successfully unpacked and MD5 sums checked
package ‘jsonlite’ successfully unpacked and MD5 sums checked
package ‘lubridate’ successfully unpacked and MD5 sums checked
package ‘magrittr’ successfully unpacked and MD5 sums checked
package ‘readr’ successfully unpacked and MD5 sums checked
package ‘rlang’ successfully unpacked and MD5 sums checked
package ‘tibble’ successfully unpacked and MD5 sums checked
package ‘tidyr’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\arikl\AppData\Local\Temp\RtmpCoTyE0\downloaded_packages
installing the source packages ‘lifecycle’, ‘gargle’, ‘rematch2’, ‘scales’, ‘broom’, ‘dbplyr’, ‘dtplyr’, ‘googledrive’, ‘googlesheets4’, ‘ggplot2’, ‘hms’, ‘modelr’, ‘pillar’, ‘rvest’, ‘tidyverse’
trying URL 'https://cran.rstudio.com/src/contrib/lifecycle_1.0.1.tar.gz'
Content type 'application/x-gzip' length 99716 bytes (97 KB)
downloaded 97 KB
trying URL 'https://cran.rstudio.com/src/contrib/gargle_1.2.0.tar.gz'
Content type 'application/x-gzip' length 313418 bytes (306 KB)
downloaded 306 KB
trying URL 'https://cran.rstudio.com/src/contrib/rematch2_2.1.2.tar.gz'
Content type 'application/x-gzip' length 13366 bytes (13 KB)
downloaded 13 KB
trying URL 'https://cran.rstudio.com/src/contrib/scales_1.1.1.tar.gz'
Content type 'application/x-gzip' length 515201 bytes (503 KB)
downloaded 503 KB
trying URL 'https://cran.rstudio.com/src/contrib/broom_0.7.9.tar.gz'
Content type 'application/x-gzip' length 631606 bytes (616 KB)
downloaded 616 KB
trying URL 'https://cran.rstudio.com/src/contrib/dbplyr_2.1.1.tar.gz'
Content type 'application/x-gzip' length 581845 bytes (568 KB)
downloaded 568 KB
trying URL 'https://cran.rstudio.com/src/contrib/dtplyr_1.1.0.tar.gz'
Content type 'application/x-gzip' length 111895 bytes (109 KB)
downloaded 109 KB
trying URL 'https://cran.rstudio.com/src/contrib/googledrive_2.0.0.tar.gz'
Content type 'application/x-gzip' length 1593656 bytes (1.5 MB)
downloaded 1.5 MB
trying URL 'https://cran.rstudio.com/src/contrib/googlesheets4_1.0.0.tar.gz'
Content type 'application/x-gzip' length 222038 bytes (216 KB)
downloaded 216 KB
trying URL 'https://cran.rstudio.com/src/contrib/ggplot2_3.3.5.tar.gz'
Content type 'application/x-gzip' length 3063309 bytes (2.9 MB)
downloaded 2.9 MB
trying URL 'https://cran.rstudio.com/src/contrib/hms_1.1.1.tar.gz'
Content type 'application/x-gzip' length 43117 bytes (42 KB)
downloaded 42 KB
trying URL 'https://cran.rstudio.com/src/contrib/modelr_0.1.8.tar.gz'
Content type 'application/x-gzip' length 121333 bytes (118 KB)
downloaded 118 KB
trying URL 'https://cran.rstudio.com/src/contrib/pillar_1.6.3.tar.gz'
Content type 'application/x-gzip' length 1130236 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/src/contrib/rvest_1.0.1.tar.gz'
Content type 'application/x-gzip' length 94307 bytes (92 KB)
downloaded 92 KB
trying URL 'https://cran.rstudio.com/src/contrib/tidyverse_1.3.1.tar.gz'
Content type 'application/x-gzip' length 702779 bytes (686 KB)
downloaded 686 KB
* installing *source* package 'lifecycle' ...
** package 'lifecycle' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 0.4.5 is being loaded, but >= 0.4.10 is required
ERROR: lazy loading failed for package 'lifecycle'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/lifecycle'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘lifecycle’ had non-zero exit status
* installing *source* package 'gargle' ...
** package 'gargle' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 0.4.5 is being loaded, but >= 0.4.9 is required
ERROR: lazy loading failed for package 'gargle'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/gargle'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘gargle’ had non-zero exit status
* installing *source* package 'rematch2' ...
** package 'rematch2' successfully unpacked and MD5 sums checked
** R
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'lifecycle'
ERROR: lazy loading failed for package 'rematch2'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/rematch2'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘rematch2’ had non-zero exit status
* installing *source* package 'broom' ...
** package 'broom' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'dplyr' 0.8.5 is being loaded, but >= 1.0.0 is required
ERROR: lazy loading failed for package 'broom'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/broom'
* restoring previous 'C:/Users/arikl/Documents/R/win-library/3.5/broom'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘broom’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'scales'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/scales'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘scales’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'dbplyr'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/dbplyr'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘dbplyr’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'dtplyr'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/dtplyr'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘dtplyr’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'hms'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/hms'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘hms’ had non-zero exit status
* installing *source* package 'modelr' ...
** package 'modelr' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'lifecycle'
ERROR: lazy loading failed for package 'modelr'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/modelr'
* restoring previous 'C:/Users/arikl/Documents/R/win-library/3.5/modelr'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘modelr’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'pillar'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/pillar'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘pillar’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'rvest'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/rvest'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘rvest’ had non-zero exit status
ERROR: dependencies 'gargle', 'lifecycle', 'pillar' are not available for package 'googledrive'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/googledrive'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘googledrive’ had non-zero exit status
ERROR: dependency 'scales' is not available for package 'ggplot2'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/ggplot2'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘ggplot2’ had non-zero exit status
ERROR: dependencies 'gargle', 'googledrive', 'rematch2' are not available for package 'googlesheets4'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/googlesheets4'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘googlesheets4’ had non-zero exit status
ERROR: dependencies 'dbplyr', 'dtplyr', 'googledrive', 'googlesheets4', 'ggplot2', 'hms', 'pillar', 'rvest' are not available for package 'tidyverse'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/tidyverse'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘tidyverse’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\arikl\AppData\Local\Temp\RtmpCoTyE0\downloaded_packages’
> library(tidyverse)
Error in library(tidyverse) : there is no package called ‘tidyverse’
You have a very old version of R. You should update to the current version if you want things to go smoothly.
If you can't do that, here's what you'll have to do:
Install the version of Rtools suitable for R 3.5.x.
Install the packages you want. Some of them won't work, because they will need later versions of R, but won't declare that. So when you find one that fails, try installing the previous version of that package. If that also fails, try an even earlier one. Etc. Your R version was current in 2018, so you may need to go that far back in time to find compatible packages.
Once you finally have everything working, try to update your packages. Maybe some of them could be more recent versions, maybe not. Do them one at a time. Typically tidyverse needs about 90 of them, so this will take a while.
So I recommend that you update your R version.
On my macOS12, it prompts me to install openssl and then install tinyverse again

Can't install tidyverse package in R version 3.5.2

I am trying to install the tidyverse package and not being able to do it.
1-tried via Packages -> Install
2-tried from console-> install.packages("tidyverse")
Gives errors as below and therefore not loading the lirary
> library(tidyverse)
Error in library(tidyverse) : there is no package called ‘tidyverse’
Console Errors:
****************************************************************************************
> install.packages("tidyverse")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/arikl/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependencies ‘lifecycle’, ‘tidyselect’, ‘vctrs’, ‘gargle’, ‘glue’, ‘rematch2’, ‘scales’, ‘ellipsis’, ‘vroom’, ‘tzdb’, ‘broom’, ‘cli’, ‘dbplyr’, ‘dplyr’, ‘dtplyr’, ‘googledrive’, ‘googlesheets4’, ‘ggplot2’, ‘haven’, ‘hms’, ‘jsonlite’, ‘lubridate’, ‘magrittr’, ‘modelr’, ‘pillar’, ‘readr’, ‘rlang’, ‘rvest’, ‘tibble’, ‘tidyr’
There are binary versions available but the source versions
are later:
binary source needs_compilation
lifecycle 0.2.0 1.0.1 FALSE
tidyselect 1.0.0 1.1.1 TRUE
vctrs 0.2.4 0.3.8 TRUE
gargle 0.4.0 1.2.0 FALSE
glue 1.4.0 1.4.2 TRUE
rematch2 2.1.0 2.1.2 FALSE
scales 1.1.0 1.1.1 FALSE
ellipsis 0.3.0 0.3.2 TRUE
vroom 1.2.0 1.5.5 TRUE
broom 0.5.6 0.7.9 FALSE
cli 2.0.2 3.0.1 TRUE
dbplyr 1.4.3 2.1.1 FALSE
dplyr 0.8.5 1.0.7 TRUE
dtplyr 1.0.1 1.1.0 FALSE
googledrive 1.0.0 2.0.0 FALSE
googlesheets4 0.1.1 1.0.0 FALSE
ggplot2 3.3.0 3.3.5 FALSE
haven 2.2.0 2.4.3 TRUE
hms 0.5.3 1.1.1 FALSE
jsonlite 1.6.1 1.7.2 TRUE
lubridate 1.7.8 1.7.10 TRUE
magrittr 1.5 2.0.1 TRUE
modelr 0.1.6 0.1.8 FALSE
pillar 1.4.3 1.6.3 FALSE
readr 1.3.1 2.0.2 TRUE
rlang 0.4.5 0.4.11 TRUE
rvest 0.3.5 1.0.1 FALSE
tibble 3.0.1 3.1.4 TRUE
tidyr 1.0.2 1.1.4 TRUE
tidyverse 1.3.0 1.3.1 FALSE
Binaries will be installed
Package which is only available in source form, and may need
compilation of C/C++/Fortran: ‘tzdb’
These will not be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tidyselect_1.0.0.zip'
Content type 'application/zip' length 242507 bytes (236 KB)
downloaded 236 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/vctrs_0.2.4.zip'
Content type 'application/zip' length 1018801 bytes (994 KB)
downloaded 994 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/glue_1.4.0.zip'
Content type 'application/zip' length 157284 bytes (153 KB)
downloaded 153 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/ellipsis_0.3.0.zip'
Content type 'application/zip' length 44220 bytes (43 KB)
downloaded 43 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/vroom_1.2.0.zip'
Content type 'application/zip' length 1665604 bytes (1.6 MB)
downloaded 1.6 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/cli_2.0.2.zip'
Content type 'application/zip' length 397120 bytes (387 KB)
downloaded 387 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/dplyr_0.8.5.zip'
Content type 'application/zip' length 3256479 bytes (3.1 MB)
downloaded 3.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/haven_2.2.0.zip'
Content type 'application/zip' length 1050152 bytes (1.0 MB)
downloaded 1.0 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/jsonlite_1.6.1.zip'
Content type 'application/zip' length 1164207 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/lubridate_1.7.8.zip'
Content type 'application/zip' length 1583751 bytes (1.5 MB)
downloaded 1.5 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/magrittr_1.5.zip'
Content type 'application/zip' length 155738 bytes (152 KB)
downloaded 152 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/readr_1.3.1.zip'
Content type 'application/zip' length 1588558 bytes (1.5 MB)
downloaded 1.5 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/rlang_0.4.5.zip'
Content type 'application/zip' length 1115838 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tibble_3.0.1.zip'
Content type 'application/zip' length 407904 bytes (398 KB)
downloaded 398 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tidyr_1.0.2.zip'
Content type 'application/zip' length 1297802 bytes (1.2 MB)
downloaded 1.2 MB
package ‘tidyselect’ successfully unpacked and MD5 sums checked
package ‘vctrs’ successfully unpacked and MD5 sums checked
package ‘glue’ successfully unpacked and MD5 sums checked
package ‘ellipsis’ successfully unpacked and MD5 sums checked
package ‘vroom’ successfully unpacked and MD5 sums checked
package ‘cli’ successfully unpacked and MD5 sums checked
package ‘dplyr’ successfully unpacked and MD5 sums checked
package ‘haven’ successfully unpacked and MD5 sums checked
package ‘jsonlite’ successfully unpacked and MD5 sums checked
package ‘lubridate’ successfully unpacked and MD5 sums checked
package ‘magrittr’ successfully unpacked and MD5 sums checked
package ‘readr’ successfully unpacked and MD5 sums checked
package ‘rlang’ successfully unpacked and MD5 sums checked
package ‘tibble’ successfully unpacked and MD5 sums checked
package ‘tidyr’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\arikl\AppData\Local\Temp\RtmpCoTyE0\downloaded_packages
installing the source packages ‘lifecycle’, ‘gargle’, ‘rematch2’, ‘scales’, ‘broom’, ‘dbplyr’, ‘dtplyr’, ‘googledrive’, ‘googlesheets4’, ‘ggplot2’, ‘hms’, ‘modelr’, ‘pillar’, ‘rvest’, ‘tidyverse’
trying URL 'https://cran.rstudio.com/src/contrib/lifecycle_1.0.1.tar.gz'
Content type 'application/x-gzip' length 99716 bytes (97 KB)
downloaded 97 KB
trying URL 'https://cran.rstudio.com/src/contrib/gargle_1.2.0.tar.gz'
Content type 'application/x-gzip' length 313418 bytes (306 KB)
downloaded 306 KB
trying URL 'https://cran.rstudio.com/src/contrib/rematch2_2.1.2.tar.gz'
Content type 'application/x-gzip' length 13366 bytes (13 KB)
downloaded 13 KB
trying URL 'https://cran.rstudio.com/src/contrib/scales_1.1.1.tar.gz'
Content type 'application/x-gzip' length 515201 bytes (503 KB)
downloaded 503 KB
trying URL 'https://cran.rstudio.com/src/contrib/broom_0.7.9.tar.gz'
Content type 'application/x-gzip' length 631606 bytes (616 KB)
downloaded 616 KB
trying URL 'https://cran.rstudio.com/src/contrib/dbplyr_2.1.1.tar.gz'
Content type 'application/x-gzip' length 581845 bytes (568 KB)
downloaded 568 KB
trying URL 'https://cran.rstudio.com/src/contrib/dtplyr_1.1.0.tar.gz'
Content type 'application/x-gzip' length 111895 bytes (109 KB)
downloaded 109 KB
trying URL 'https://cran.rstudio.com/src/contrib/googledrive_2.0.0.tar.gz'
Content type 'application/x-gzip' length 1593656 bytes (1.5 MB)
downloaded 1.5 MB
trying URL 'https://cran.rstudio.com/src/contrib/googlesheets4_1.0.0.tar.gz'
Content type 'application/x-gzip' length 222038 bytes (216 KB)
downloaded 216 KB
trying URL 'https://cran.rstudio.com/src/contrib/ggplot2_3.3.5.tar.gz'
Content type 'application/x-gzip' length 3063309 bytes (2.9 MB)
downloaded 2.9 MB
trying URL 'https://cran.rstudio.com/src/contrib/hms_1.1.1.tar.gz'
Content type 'application/x-gzip' length 43117 bytes (42 KB)
downloaded 42 KB
trying URL 'https://cran.rstudio.com/src/contrib/modelr_0.1.8.tar.gz'
Content type 'application/x-gzip' length 121333 bytes (118 KB)
downloaded 118 KB
trying URL 'https://cran.rstudio.com/src/contrib/pillar_1.6.3.tar.gz'
Content type 'application/x-gzip' length 1130236 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/src/contrib/rvest_1.0.1.tar.gz'
Content type 'application/x-gzip' length 94307 bytes (92 KB)
downloaded 92 KB
trying URL 'https://cran.rstudio.com/src/contrib/tidyverse_1.3.1.tar.gz'
Content type 'application/x-gzip' length 702779 bytes (686 KB)
downloaded 686 KB
* installing *source* package 'lifecycle' ...
** package 'lifecycle' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 0.4.5 is being loaded, but >= 0.4.10 is required
ERROR: lazy loading failed for package 'lifecycle'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/lifecycle'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘lifecycle’ had non-zero exit status
* installing *source* package 'gargle' ...
** package 'gargle' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 0.4.5 is being loaded, but >= 0.4.9 is required
ERROR: lazy loading failed for package 'gargle'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/gargle'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘gargle’ had non-zero exit status
* installing *source* package 'rematch2' ...
** package 'rematch2' successfully unpacked and MD5 sums checked
** R
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'lifecycle'
ERROR: lazy loading failed for package 'rematch2'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/rematch2'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘rematch2’ had non-zero exit status
* installing *source* package 'broom' ...
** package 'broom' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'dplyr' 0.8.5 is being loaded, but >= 1.0.0 is required
ERROR: lazy loading failed for package 'broom'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/broom'
* restoring previous 'C:/Users/arikl/Documents/R/win-library/3.5/broom'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘broom’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'scales'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/scales'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘scales’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'dbplyr'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/dbplyr'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘dbplyr’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'dtplyr'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/dtplyr'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘dtplyr’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'hms'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/hms'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘hms’ had non-zero exit status
* installing *source* package 'modelr' ...
** package 'modelr' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'lifecycle'
ERROR: lazy loading failed for package 'modelr'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/modelr'
* restoring previous 'C:/Users/arikl/Documents/R/win-library/3.5/modelr'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘modelr’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'pillar'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/pillar'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘pillar’ had non-zero exit status
ERROR: dependency 'lifecycle' is not available for package 'rvest'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/rvest'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘rvest’ had non-zero exit status
ERROR: dependencies 'gargle', 'lifecycle', 'pillar' are not available for package 'googledrive'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/googledrive'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘googledrive’ had non-zero exit status
ERROR: dependency 'scales' is not available for package 'ggplot2'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/ggplot2'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘ggplot2’ had non-zero exit status
ERROR: dependencies 'gargle', 'googledrive', 'rematch2' are not available for package 'googlesheets4'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/googlesheets4'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘googlesheets4’ had non-zero exit status
ERROR: dependencies 'dbplyr', 'dtplyr', 'googledrive', 'googlesheets4', 'ggplot2', 'hms', 'pillar', 'rvest' are not available for package 'tidyverse'
* removing 'C:/Users/arikl/Documents/R/win-library/3.5/tidyverse'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘tidyverse’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\arikl\AppData\Local\Temp\RtmpCoTyE0\downloaded_packages’
> library(tidyverse)
Error in library(tidyverse) : there is no package called ‘tidyverse’
You have a very old version of R. You should update to the current version if you want things to go smoothly.
If you can't do that, here's what you'll have to do:
Install the version of Rtools suitable for R 3.5.x.
Install the packages you want. Some of them won't work, because they will need later versions of R, but won't declare that. So when you find one that fails, try installing the previous version of that package. If that also fails, try an even earlier one. Etc. Your R version was current in 2018, so you may need to go that far back in time to find compatible packages.
Once you finally have everything working, try to update your packages. Maybe some of them could be more recent versions, maybe not. Do them one at a time. Typically tidyverse needs about 90 of them, so this will take a while.
So I recommend that you update your R version.
On my macOS12, it prompts me to install openssl and then install tinyverse again

tidyverse installation error: lazy loading failed for package 'dbplyr'

I have tried to install the package tidyverse in RStudio, but have encountered an error. I have copied below the entire results in the Console window. It seems like I need to have dplyr version 1.0.4 installed as a dependency for the package broom. So I tried to install dplyr using install.packages("dplyr") but it ended up installing 0.8.5. Given that I don't have admin access in my laptop, how can I solve this issue? Also, do I really need Rtools? If yes, I will need to convince my office's IT team. Any suggestion will be highly appreciated.
install.packages("tidyverse")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
also installing the dependencies ‘rlang’, ‘tidyselect’, ‘vctrs’, ‘dplyr’, ‘broom’, ‘dbplyr’, ‘modelr’
There are binary versions available but the source versions are later:
binary source needs_compilation
rlang 0.4.5 0.4.10 TRUE
tidyselect 1.0.0 1.1.0 TRUE
vctrs 0.2.4 0.3.6 TRUE
dplyr 0.8.5 1.0.4 TRUE
broom 0.5.6 0.7.4 FALSE
dbplyr 1.4.3 2.1.0 FALSE
modelr 0.1.6 0.1.8 FALSE
Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/rlang_0.4.5.zip'
Content type 'application/zip' length 1115838 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tidyselect_1.0.0.zip'
Content type 'application/zip' length 242507 bytes (236 KB)
downloaded 236 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/vctrs_0.2.4.zip'
Content type 'application/zip' length 1018801 bytes (994 KB)
downloaded 994 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/dplyr_0.8.5.zip'
Content type 'application/zip' length 3256479 bytes (3.1 MB)
downloaded 3.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/tidyverse_1.3.0.zip'
Content type 'application/zip' length 439648 bytes (429 KB)
downloaded 429 KB
package ‘rlang’ successfully unpacked and MD5 sums checked
package ‘tidyselect’ successfully unpacked and MD5 sums checked
package ‘vctrs’ successfully unpacked and MD5 sums checked
package ‘dplyr’ successfully unpacked and MD5 sums checked
package ‘tidyverse’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\Raihant\AppData\Local\Temp\RtmpWa2w6P\downloaded_packages
installing the source packages ‘broom’, ‘dbplyr’, ‘modelr’
trying URL 'https://cran.rstudio.com/src/contrib/broom_0.7.4.tar.gz'
Content type 'application/x-gzip' length 629713 bytes (614 KB)
downloaded 614 KB
trying URL 'https://cran.rstudio.com/src/contrib/dbplyr_2.1.0.tar.gz'
Content type 'application/x-gzip' length 579687 bytes (566 KB)
downloaded 566 KB
trying URL 'https://cran.rstudio.com/src/contrib/modelr_0.1.8.tar.gz'
Content type 'application/x-gzip' length 121333 bytes (118 KB)
downloaded 118 KB
* installing *source* package 'broom' ...
** package 'broom' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'dplyr' 0.8.5 is being loaded, but >= 1.0.0 is required
ERROR: lazy loading failed for package 'broom'
* removing 'C:/Program Files/R/R-3.5.2/library/broom'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘broom’ had non-zero exit status
* installing *source* package 'dbplyr' ...
** package 'dbplyr' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace 'dplyr' 0.8.5 is being loaded, but >= 1.0.3 is required
ERROR: lazy loading failed for package 'dbplyr'
* removing 'C:/Program Files/R/R-3.5.2/library/dbplyr'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘dbplyr’ had non-zero exit status
ERROR: dependency 'broom' is not available for package 'modelr'
* removing 'C:/Program Files/R/R-3.5.2/library/modelr'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘modelr’ had non-zero exit status

error using the 'digest' package in R

I recently had some problems installing and using the package "digest" in R-3.4.3, which I used previously in R-3.4.1 with no problem. Below are the messages I received from R.
install.packages("digest", dependencies = TRUE)
trying URL 'https://mirror.aarnet.edu.au/pub/CRAN/bin/windows/contrib/3.4/digest_0.6.15.zip'
Content type 'application/zip' length 175238 bytes (171 KB)
downloaded 171 KB
package ‘digest’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\weizha\AppData\Local\Temp\RtmpwhNFrq\downloaded_packages
library(digest)
Error: package or namespace load failed for ‘digest’ in FUN(X[[i]], ...):
no such symbol digest in package E:/R 3.4.3/library/digest/libs/x64/digest.dll
Previously I used install.packages(devtools) in R-3.4.1 which installs "digest" as well, and it all worked fine. Recently work upgraded our operating system to windows 10 (from 7) and installed R-3.4.3 for us, and I couldn't get devtools to work anymore, I figured out it's because digest is not working as has been shown above. I've read everything I can find online, but I have no clue how to fix this.
> .libPaths()
[1] "E:/R-3.4.3/library"
> install.packages("digest", lib="E:/R-3.4.3/library")
--- Please select a CRAN mirror for use in this session ---
trying URL 'https://cran.csiro.au/bin/windows/contrib/3.4/digest_0.6.15.zip'
Content type 'application/zip' length 175238 bytes (171 KB)
downloaded 171 KB
package ‘digest’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\weizha\AppData\Local\Temp\RtmpCQY8o1\downloaded_packages
> library(digest)
Error: package or namespace load failed for ‘digest’ in FUN(X[[i]], ...):
no such symbol digest in package E:/R-3.4.3/library/digest/libs/x64/digest.dll
> library("digest", lib.loc="E:/R-3.4.3/library")
Error: package or namespace load failed for ‘digest’ in FUN(X[[i]], ...):
no such symbol digest in package E:/R-3.4.3/library/digest/libs/x64/digest.dll
> sessionInfo()
R version 3.4.3 (2017-11-30)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 14393)
Matrix products: default
locale:
[1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252
[3] LC_MONETARY=English_Australia.1252 LC_NUMERIC=C
[5] LC_TIME=English_Australia.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.4.3 tools_3.4.3
>
> setwd('E:/R-3.4.3')
> install.packages("digest", type="source")
trying URL 'https://cran.csiro.au/src/contrib/digest_0.6.15.tar.gz'
Content type 'application/x-gzip' length 122095 bytes (119 KB)
downloaded 119 KB
* installing *source* package 'digest' ...
** package 'digest' successfully unpacked and MD5 sums checked
** libs
Warning: running command 'make -f "E:/R-34~1.3/etc/x64/Makeconf" -f "E:/R-34~1.3/share/make/winshlib.mk" SHLIB="digest.dll" WIN=64 TCLBIN=64 OBJECTS="aes.o crc32.o digest.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o xxhash.o"' had status 127
ERROR: compilation failed for package 'digest'
* removing 'E:/R-3.4.3/library/digest'
In R CMD INSTALL
The downloaded source packages are in
‘C:\Users\weizha\AppData\Local\Temp\RtmpCQY8o1\downloaded_packages’
Warning messages:
1: running command '"E:/R-3.4.3/bin/x64/R" CMD INSTALL -l "E:\R-3.4.3\library" C:\Users\weizha\AppData\Local\Temp\RtmpCQY8o1/downloaded_packages/digest_0.6.15.tar.gz' had status 1
2: In install.packages("digest", type = "source") :
installation of package ‘digest’ had non-zero exit status
> .libPaths()
[1] "E:/R-3.4.3/library"
> install.packages("digest", type="binary")
--- Please select a CRAN mirror for use in this session ---
trying URL 'https://cran.csiro.au/bin/windows/contrib/3.4/digest_0.6.15.zip'
Content type 'application/zip' length 175238 bytes (171 KB)
downloaded 171 KB
package ‘digest’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\weizha\AppData\Local\Temp\Rtmp0UupHr\downloaded_packages
> library(digest)
Error: package or namespace load failed for ‘digest’ in FUN(X[[i]], ...):
no such symbol digest in package E:/R-3.4.3/library/digest/libs/x64/digest.dll
When I manually download the package from CRAN, this is what I received from R
> .libPaths()
[1] "E:/R-3.4.3/library"
> library(digest)
Error: package ‘digest’ was installed by an R version with different internals; it needs to be reinstalled for use with this R version
In addition: Warning message:
package ‘digest’ was built under R version 3.5.0
>

Why do I get this error installing rmarkdown

I try to use rmarkdown and I've got many troubles so far. The first one is when the Rstudio as if it should install new versions of packages. It can not go over it. I tried to install one by one all the required packages but than I got this error
trying URL 'https://cran.rstudio.com/bin/windows/contrib/2.15/knitr_1.5.zip'
Content type 'application/zip' length 910172 bytes (888 Kb)
opened URL
downloaded 888 Kb
package ‘evaluate’ successfully unpacked and MD5 sums checked
package ‘digest’ successfully unpacked and MD5 sums checked
package ‘formatR’ successfully unpacked and MD5 sums checked
package ‘highr’ successfully unpacked and MD5 sums checked
package ‘markdown’ successfully unpacked and MD5 sums checked
package ‘stringr’ successfully unpacked and MD5 sums checked
package ‘knitr’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\mali\AppData\Local\Temp\Rtmpcz1Ywk\downloaded_packages
Error: invalid version specification ‘NA’
In addition: Warning message:
In utils:::packageDescription(packageName, fields = "Version") :
no package 'knitr' was found
I installed packages one by one and I can load them but it does not work as a whole i.r. file -> new -> rmarkdown
> sessionInfo()
R version 3.1.2 (2014-10-31)
Platform: i386-w64-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=Swedish_Sweden.1252 LC_CTYPE=Swedish_Sweden.1252 LC_MONETARY=Swedish_Sweden.1252 LC_NUMERIC=C
[5] LC_TIME=Swedish_Sweden.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rmarkdown_0.9.6 knitr_1.12.3
loaded via a namespace (and not attached):
[1] digest_0.6.9 htmltools_0.3.5 Rcpp_0.12.4 tools_3.1.2
I spotted recently that I got this kind of message when starting Rstudio
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
Error: invalid version specification ‘NA’
In addition: Warning message:
In utils:::packageDescription(packageName, fields = "Version") :
no package 'knitr' was found
>
I did as #DAV recommended. Tried to install other version. No success
> url <- "https://cran.r-project.org/src/contrib/Archive/knitr/knitr_1.0.tar.gz"
> install.packages(url, repos=NULL, type="source")
Installing package into ‘\\xxx/users/Eke/mali/Documents/R/win-library/3.1’
(as ‘lib’ is unspecified)
trying URL 'https://cran.r-project.org/src/contrib/Archive/knitr/knitr_1.0.tar.gz'
Content type 'application/x-gzip' length 451348 bytes (440 Kb)
opened URL
downloaded 440 Kb
* installing *source* package 'knitr' ...
** package 'knitr' successfully unpacked and MD5 sums checked
** R
** demo
** inst
** preparing package for lazy loading
Warning in file(con, "r") :
file("") only supports open = "w+" and open = "w+b": using the former
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Warning in library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) :
there is no package called 'knitr'
Error: loading failed
Execution halted
ERROR: loading failed
* removing '\\xxxxxx/users/Eke/mali/Documents/R/win-library/3.1/knitr'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-31~1.2/bin/i386/R" CMD INSTALL -l "\\xxxxx\users\Eke\mali\Documents\R\win-library\3.1" "C:/Users/mali/AppData/Local/Temp/RtmpoN1qrM/downloaded_packages/knitr_1.0.tar.gz"' had status 1
Warning in install.packages :
installation of package ‘C:/Users/mali/AppData/Local/Temp/RtmpoN1qrM/downloaded_packages/knitr_1.0.tar.gz’ had non-zero exit status
It drives me crazy. I uninstalled "knitr" and tried to install again. ERROR
> install.packages("knitr", dependencies = F)
Installing package into ‘\\xxxx.se/users/Eke/mali/Documents/R/win-library/3.1’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.1/knitr_1.12.3.zip'
Content type 'application/zip' length 812186 bytes (793 Kb)
opened URL
downloaded 793 Kb
package ‘knitr’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\mali\AppData\Local\Temp\RtmpaChLQ5\downloaded_packages
Error: invalid version specification ‘NA’
In addition: Warning message:
In utils:::packageDescription(packageName, fields = "Version") :
no package 'knitr' was found
And it happened when I wanted to install shiny
> install.packages("shiny", dependencies = F)
Installing package into ‘\\xxxxx.xxx/users/Eke/mali/Documents/R/win-library/3.1’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.1/shiny_0.13.2.zip'
Content type 'application/zip' length 2257481 bytes (2.2 Mb)
opened URL
downloaded 2.2 Mb
package ‘shiny’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\mali\AppData\Local\Temp\RtmpC0nOFC\downloaded_packages
Error: invalid version specification ‘NA’
In addition: Warning message:
In utils:::packageDescription(packageName, fields = "Version") :
no package 'knitr' was found
You can tell RStudio the location of your library through the .libPaths()
command and then manually selecting knitr and the other packages necessary to use the "rmarkdown" documents in RStudio through the Packages window in your screen.
getwd()
# "C:/Users/s146753/Dropbox/Chapter 2"
.libPaths()
# "\\\\home2.bio.ed.ac.uk/s146753/R/win-library/3.3" "C:/Program Files/R/R-3.3.2/library"
.libPaths("C:/Program Files/R/R-3.3.2/library")
.libPaths()
# "C:/Program Files/R/R-3.3.2/library"

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