Unloading the package R6 2.2.0 in R 3.4.4 - r

I am using R 3.4.4 in a very controlled environment in my company.
Basically I am having issues loading caret package:
Installation is successful with:
install.packages("caret", repos="http://cran.rstudio.com/", type= 'binary') - for windows
now when I try to load it, I get the below error:
library(caret)
Error: package or namespace load failed for ‘caret’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
namespace ‘R6’ 2.2.0 is already loaded, but >= 2.2.2 is required
In addition: Warning message:
package ‘caret’ was built under R version 3.4.4
I have both R6 2.2.0 and R6 2.4.0 installed in my library. However, if I try to uninstall R6 2.2.0, I get the below error:
Error in value[[3L]](cond) :
Package ‘R6’ version 2.2.0 cannot be unloaded:
Error in unloadNamespace(package) : namespace ‘R6’ is imported by ‘mrsdeploy’, ‘CompatibilityAPI’ so cannot be unloaded
In addition: Warning message:
package ‘R6’ was built under R version 3.4.4
Help please. Thanks in advance.

Package dependencies are to blame: if the package cannot be unloaded because another package has imported some of its functions, then you need to first unload that package. In this case, the mrsdeploy and CompatibilityAPI packages should be removed first. Note that this might be recursive, since anything that has imported anything from either of those packages will need to be unloaded.
The suggestion was made to restart with a clean R session, and you said that it did not work. I suggest that you restarted R, but it was not a clean R session: if there is an .Rdata file or a project file that automatically loads the previous session's data and/or libraries, then a clean session starts ... pre-cluttered. In that case, you can work around it by starting R manually (perhaps not in RStudio or your preferred IDE) as R --no-restore, as that should not restore (well named!) the .Rdata file.

Related

A problem with the `cli` package the is affecting `ggfortify` and `tidyr` packages? [duplicate]

strong textI keep encountering problems with installing tidyverse package, which preventing me from implementing many text processing tasks. The problem is the same as those mentioned in many previous threads since 2017 in that when I enter library(tidyverse) or try to open other related packages, they always say it requires 0.2.1 version of vctrs. I have tried using remote download or download other temporary versions but to avail. Could someone help me on this?
I'm using the latest version of R (version 3.6.1), running on Rstudio 1.2.5033. I also updated my vctrs package.
install.packages("tidyverse")
devtools::install_github("tidyverse/tidyverse")
library(tidyverse)
Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
namespace ‘vctrs’ 0.2.0 is already loaded, but >= 0.2.1 is required
In addition: Warning message:
package ‘tidyverse’ was built under R version 3.6.2
library(devtools)
devtools::install_github("tidyverse/tidyverse")
library(tidyverse)
Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
namespace ‘vctrs’ 0.2.0 is already loaded, but >= 0.2.1 is required
In addition: Warning message:
package ‘tidyverse’ was built under R version 3.6.2
This has already been answered above, and I am leaving my notes for other "beginners" that may have run into the same thing. I encountered this issue after installing tidymodels (have since removed).
Had issue with rlang first: namespace ‘rlang’ 0.4.7 is already loaded, but >= 0.4.10 is required
remove.packages("rlang"), install.packages("rlang")
Then had issue with vctrs: namespace ‘vctrs’ 0.3.2 is already loaded, but >= 0.3.6 is required
does not respond to the remove/install process.
Shut down R, manually delete the vctrs directory from lib, per Edward's message above. Will be somewhere like: C:\Users\Chris\Documents\R\win-library\3.6\vctrs
Start RStudio. install.packages("vctrs")
After this, I could load tidyverse again.
It´s important to check for packages updates. It´s in tool menu->check for package updates->choose the packages. I had the same problem with other package "drc" and it gave me the same error with old version of "vctr".
You've probably got more than one instance of R running with those tidyverse packages loaded. Not sure about other operating systems, but on Windows, if these packages are being used, then those DLL files will be in use and you cannot delete them, which is what the install.packages() function will try to do.
So, just close all but one instance of R, maybe restart the computer just to be sure, and try again.
I had the same issue:
namespace 'vctrs' 0.3.7 is already loaded, but >= 0.3.8 is required
I tried:
unloadNamespace("vctrs")
namespace 'vctrs' is imported by 'pillar' so cannot be unloaded
So then:
install.packages("pillar")
It automatically restarts R and re-installs pillar. This worked for me!
I had the same problem and I installed Rtools, which is a package management tool for R, from https://cran.r-project.org/bin/windows/Rtools/ and it worked!

Loading ggplot2 throwing the Error: package or namespace load failed .... there is no package called ‘colorspace’

I'm trying to run a different package that's dependent on ggplot2. When I load ggplot2 it gives me the error:
library(ggplot2) Error: package or namespace load failed for ‘ggplot2’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘colorspace’
I tried to install colorspace and I got this lovely error:
install.packages("colorspace") ERROR: compilation failed for package ‘colorspace’ Warning in install.packages : installation of package ‘colorspace’ had non-zero exit status'
So I tried installing it after downloading it from http://cran.r-project.org/web/packages/colorspace/index.html.
And that still didn't work.
I've also tried closing everything down and reinstalling ggplot2.
I updated R to
`R version 4.0.5 (2021-03-31) -- "Shake and Throw"
this morning.
Are you in windows, Mac or Linux? For windows users it’s necessary to install Rtools which deals with installing packages from binary. Mac and Linux users should not have this issue.
I have had the same problem today updating my R from 3.6.1 to 4.1 and this worked for me:
install.packages("colorspace")
and when R asks
Do you want to install from sources the package which needs compilation? (Yes/no/cancel)
type no

Caret library fails to load

I successfully installed caret but when loading the library I get the following error message:
library(caret)
Error: package or namespace load failed for ‘caret’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
namespace ‘generics’ 0.0.2 is already loaded, but >= 0.1.0 is required
what does 0.1.0 refer to?
I had the same issue, apparently some required dependencies for the caret package need to be updated. However installing it with DEPENDENCIES = TRUE, did not fix the problem for me.
What did work was:
Close all your .rmd files in RStudio and then click on the 'update' button in the tab with the packages:
This should update all your packages including the ones caret needs be updated, to work with their latest version.
I solved the problem by uninstalling the caret package, restarting R and installing the package from zip file.
It is asking about the latest version of generics package. It could be solved either by manually installing some earlier version of package caret or updating the base r packages.
update.packages()
If it asks for permission then use sudo
First use this:
install.packages('hardhat')
library(hardhat)
install.packages('ipred')
library(ipred)
then,you can use library(caret).

tidyverse not loaded, it says "namespace ‘vctrs’ 0.2.0 is already loaded, but >= 0.2.1 is required"

strong textI keep encountering problems with installing tidyverse package, which preventing me from implementing many text processing tasks. The problem is the same as those mentioned in many previous threads since 2017 in that when I enter library(tidyverse) or try to open other related packages, they always say it requires 0.2.1 version of vctrs. I have tried using remote download or download other temporary versions but to avail. Could someone help me on this?
I'm using the latest version of R (version 3.6.1), running on Rstudio 1.2.5033. I also updated my vctrs package.
install.packages("tidyverse")
devtools::install_github("tidyverse/tidyverse")
library(tidyverse)
Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
namespace ‘vctrs’ 0.2.0 is already loaded, but >= 0.2.1 is required
In addition: Warning message:
package ‘tidyverse’ was built under R version 3.6.2
library(devtools)
devtools::install_github("tidyverse/tidyverse")
library(tidyverse)
Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
namespace ‘vctrs’ 0.2.0 is already loaded, but >= 0.2.1 is required
In addition: Warning message:
package ‘tidyverse’ was built under R version 3.6.2
This has already been answered above, and I am leaving my notes for other "beginners" that may have run into the same thing. I encountered this issue after installing tidymodels (have since removed).
Had issue with rlang first: namespace ‘rlang’ 0.4.7 is already loaded, but >= 0.4.10 is required
remove.packages("rlang"), install.packages("rlang")
Then had issue with vctrs: namespace ‘vctrs’ 0.3.2 is already loaded, but >= 0.3.6 is required
does not respond to the remove/install process.
Shut down R, manually delete the vctrs directory from lib, per Edward's message above. Will be somewhere like: C:\Users\Chris\Documents\R\win-library\3.6\vctrs
Start RStudio. install.packages("vctrs")
After this, I could load tidyverse again.
It´s important to check for packages updates. It´s in tool menu->check for package updates->choose the packages. I had the same problem with other package "drc" and it gave me the same error with old version of "vctr".
You've probably got more than one instance of R running with those tidyverse packages loaded. Not sure about other operating systems, but on Windows, if these packages are being used, then those DLL files will be in use and you cannot delete them, which is what the install.packages() function will try to do.
So, just close all but one instance of R, maybe restart the computer just to be sure, and try again.
I had the same issue:
namespace 'vctrs' 0.3.7 is already loaded, but >= 0.3.8 is required
I tried:
unloadNamespace("vctrs")
namespace 'vctrs' is imported by 'pillar' so cannot be unloaded
So then:
install.packages("pillar")
It automatically restarts R and re-installs pillar. This worked for me!
I had the same problem and I installed Rtools, which is a package management tool for R, from https://cran.r-project.org/bin/windows/Rtools/ and it worked!

Some Packages not Running on R Version 1.0.153 [duplicate]

I had everything working with R and RStudio, but then I moved the folders when cleaning up my computer directories & files. Now I'm getting the error message below.
Should R and RStudio be installed under Program Files or Program Files (x86)? Should I have two libPaths?
install.packages("C:/Users/kevin/Downloads/fpp_0.5.zip", repos = NULL)
## Warning in install.packages :
## package ‘C:/Users/kevin/Downloads/fpp_0.5.zip’
## is not available (for R version 3.0.0)
## Installing package into ‘C:/Users/kevin/Documents/R/win-library/3.0’
## (as ‘lib’ is unspecified)
## package ‘fpp’ successfully unpacked and MD5 sums checked
library("fpp", lib.loc="C:/Users/kevin/Documents/R/win-library/3.0")
Loading required package: forecast
## Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
## there is no package called ‘colorspace’
## Error: package ‘forecast’ could not be loaded
When you install the package using the RStudio package installer or directly from CRAN, it doesn't install the dependencies ("fracdiff", "Rcpp", "RcppArmadillo" and "colorspace") and hence, R keeps throwing the load namespace error. Installing the package through, automatically installs all the dependencies and solves this problem.
install.packages("forecast",
repos = c("http://rstudio.org/_packages",
"http://cran.rstudio.com"))
The last time I encountered a very similar problem, I used this code which I got somewhere:
install.packages("package's name", repos=c("http://rstudio.org/_packages", "http://cran.rstudio.com"))
simply put your package's name in the quotation marks.
Hope this helps.
Use this:
install.packages("colorspace", dependencies = TRUE)
I ran into this problem. It turned out that my .Rprofile had calls to a package that was not installed. Removing these lines allowed installation to proceed normally.
I got this error while installing the library 'tidyverse'. Removed the error by upgrading R from v3.4 to v3.6

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