I am trying to install the rnaturalearthhires package but I am getting many errors.
Here is the first error:
Installing the rnaturalearthhires package.
Installing package into ‘C:/Users/kkost/OneDrive/Dokumenti/R/win-library/4.0’
(as ‘lib’ is unspecified)
Error in value[3L] :
Failed to install the rnaturalearthhires package.
Please try installing the package for yourself using the following command:
install.packages("rnaturalearthhires", repos = http://packages.ropensci.org", type = "source")
Then I try the following code:
install.packages("rnaturalearthhires", repos = "http://packages.ropensci.org", type = "source")
And I get this:
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/kkost/OneDrive/Dokumenti/R/win-library/4.0’
(as ‘lib’ is unspecified)
**Error in install.packages : error reading from connection**
Then I try this code:
devtools::install_github("ropensci/rnaturalearthhires")
but end up getting this:
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace ‘rlang’ 0.4.8 is already loaded, but >= 0.4.10 is required
I also try this code:
install_github("ropensci/rnaturalearthhires")
But I get this:
Error in install_github("ropensci/rnaturalearthhires") :
could not find function "install_github"
I found this isssue, it might help:
https://github.com/ropensci/rnaturalearthhires/issues/2
install.packages("devtools") # I guess you also need this
devtools::install_github("ropensci/rnaturalearthhires")
library("rnaturalearth")
devtools can take a looong time to compile and install for some users. installation directly from github can now be done with the remotes package.
remotes::install_github("ropensci/rnaturalearthhires")
Related
When I try to load 'ecospat' I find this problem:
> library(ecospat)
Error: package or namespace load failed for ‘ecospat’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
namespace ‘biomod2’ 4.1-2 is being loaded, but < 4.0 is required
So I have tried to load a 'biomod2' 3.5.1 version, but I can't because it's not available for my version of R (4.2.1)
> install.packages("D:/Descargas/biomod2_3.5.1")
Installing package into ‘C:/Users/danie/AppData/Local/R/win-library/4.2’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘D:/Descargas/biomod2_3.5.1’ is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Someone could help me with this problem?
You can install the biomod2_3.5.1 package using the following code
install.packages("https://cran.r-project.org/src/contrib/Archive/biomod2/biomod2_3.5.1.tar.gz",
repo=NULL, type="source")
i am using this function:
test = as.data.frame (left_join (registerPers, pers, by = c ("RB030", "PB030")))
but rstudio gives me this error:
Error in left_join (registerPers, pers, by = c ("RB030", "PB030")):
I can't find the "left_join" function
despite having downloaded the dplyr package.
I actually find the problem by recalling the package:
library (dplyr)
Error: package or namespace load failed for 'dplyr' in loadNamespace (i, c (lib.loc, .libPaths ()), versionCheck = vI [[i]]):
there is no package called 'lifecycle'
how can i fix it?
I had this error and the above solution did not work for me. I also had the message. If you try
install.packages("lifecycle")
and get an error that looks like this:
WARNING: Rtools is required to build R packages but is not currently installed.
Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/student/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
also installing the dependencies ‘cli’, ‘rlang’
You will need to go to: https://cran.rstudio.com/bin/windows/Rtools/ and download the relevant version of RTools, once you have RTools installed rerun the
install.packages("lifecycle")
command and you should be able to now install it.
I upgraded R to version 3.6.2 and have discovered that package semPlot will not work. It installs without any problems, but when I try to load it I get the message,
Error: package or namespace load failed for ‘semPlot’ in
loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck =
vI[[j]]): there is no package called ‘ggm’
I then tried to install ggm but get the following warning and error:
Warning in install.packages : dependency ‘graph’ is not available
There is a binary version available but the source version is
later:
binary source needs_compilation ggm 2.3 2.5 FALSE installing the source package ‘ggm’ trying URL
'https://cran.rstudio.com/src/contrib/ggm_2.5.tar.gz' Content type
'application/x-gzip' length 109414 bytes (106 KB) downloaded 106 KB
ERROR: dependency ‘graph’ is not available for package ‘ggm’ removing
‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/ggm’
Warning in install.packages : installation of package ‘ggm’ had
non-zero exit status"
I then tried to install graph, but it says:
package ‘graph’ is not available (for R version 3.6.2).
I wondered if anyone else had experienced this problem, and had any solutions so I can load semPlot with R 3.6.2?
Many thanks.
I also have R 3.6.2 and get all errors you get. But when I try to install the semPlot package from GitHub, it works fine, as follows:
install.packages('devtools')
library(devtools)
install_github('SachaEpskamp/semPlot', dependencies = T)
library(semPlot)
Please not that I tried the cran/semPlot repository but didn't work for me, whereas SachaEpskamp/semPlot does.
Hope you get it working.
I am trying to install the Shiny package, and I am getting this error
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'httpuv' 1.4.1 is being loaded, but >= 1.4.4 is required
ERROR: lazy loading failed for package 'shiny'
* removing 'C:/Users/ikum/Documents/R/win-library/3.3/shiny'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-33~1.2/bin/x64/R" CMD INSTALL -l "C:\Users\ikum\Documents\R\win-library\3.3" C:\Users\ikum\AppData\Local\Temp\RtmpcbANIA/downloaded_packages/shiny_1.2.0.tar.gz' had status 1
Warning in install.packages :
installation of package ‘shiny’ had non-zero exit status
Even when I try to download the latest version of httpuv using the targz file, it is still going to the 1.4.1 version. I deleted httpuv as well and reinstalled it manually as well as from the CRAN repository. Nothing seems to be working.
I also have the latest version or RStudio and R.
Is there a solution to this?
You can try to add type = "binary" argument:
install.packages("shiny", type ="binary")
I have tried multiple ways to install the caret package in R.
The error message that I receive is as follows:
Error: package or namespace load failed for ‘caret’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘dimRed’
When I try to install dimRed, I get the following message:
Installing package into ‘C:/Users/Thomas/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘Biobase’ is not available
There is a binary version available but the source version is later:
binary source needs_compilation
dimRed 0.1.0 0.2.1 FALSE
installing the source package ‘dimRed’
trying URL 'https://cran.rstudio.com/src/contrib/dimRed_0.2.1.tar.gz'
Content type 'application/x-gzip' length 363025 bytes (354 KB)
downloaded 354 KB
ERROR: dependency 'Biobase' is not available for package 'dimRed'
* removing 'C:/Users/Thomas/Documents/R/win-library/3.4/dimRed'
In R CMD INSTALL
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "C:\Users\Thomas\Documents\R\win-library\3.4" C:\Users\Thomas\AppData\Local\Temp\RtmpqKhsKn/downloaded_packages/dimRed_0.2.1.tar.gz' had status 1
Warning in install.packages :
installation of package ‘dimRed’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\Thomas\AppData\Local\Temp\RtmpqKhsKn\downloaded_packages’
Per previous posts, I have updated RStudio. I have attempted an install from install_url.
Any suggestions are welcome.
I was able to figure this out.
Simply typing install.packages won't work. In order to install Biobase, you have to run the following code in R console:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Biobase", version = "3.8")
More info: https://bioconductor.org/packages/release/bioc/html/Biobase.html
Once this step is done, I installed caret again using
install.packages("caret",dependencies = T)
And then it worked.
Warning ...
install.packages("BiocManager")
This only works if your R version is >= 3.5.0
for info I've the same problem under a Centos and a Windows.
issue solved on the windows with 3.5.1 R version. Not yet solved on the centOS (3.4.2)