I'm trying to format two series of my graph in highchart. The first graph is a serie and the another is a %change. So I want to format each serie using "hc_tooltip" argument. A simplified version of my code to show my problem is the next:
a <- c(30, 40, 10, 40, 80)
b <- c(3, 4, -1, -4, -8)
d<-cbind(a,b)
dt <- seq(as.Date("2018-01-01"), as.Date("2018-01-05"), by = "days")
ts <- xts(d, dt )
highchart(type="stock") %>%
hc_add_series(ts$a,
type = "line",
color="black") %>%
hc_add_series(ts$b,
type = "lollipop",
color="red") %>%
hc_tooltip(pointFormat = '<b>{point.a.name}</b>
{point.y.a:.4f}')%>%
hc_tooltip(pointFormat = '<b>{point.b.name}</b>
{point.y.b:.4f}%')
Like I hoped, It's not working. I want I can see the data from the first serie like integer and the second like % in the graph when I put the mouse in the serie. How can I achieve that?
To achieve that, you need to use the tooltip.formatter with the relevant function
Example:
hc_tooltip(formatter = JS("function () {
if (this.series.name === "A") {
return `<b>${this.series.name}</b></br>${this.y}`
} else if (this.series.name === "B") {
return `<b>${this.series.name}</b></br>${this.y}%`
}}")
JS Demo:
https://jsfiddle.net/BlackLabel/zqyp85ag/
API Reference:
https://api.highcharts.com/highcharts/tooltip.formatter
I would like to have boxplots for subgroups in my reactable::reactable() table. It does not show boxplots for my groups but when I expand the subgroups it shows many individual boxplots. Can I tell reactable() to made a boxplot for each subgroup (and perhaps show individual values when the groups are fully expanded). Here is as far as I have gotten:
library(dplyr)
library(medicaldata)
lar_data <- as_tibble(medicaldata::laryngoscope) %>% #
mutate(
Laryngoscope =
if_else(Randomization == 0, "MacIntosh", "Pentax AWS")
) %>%
mutate( # asa as roman numerals
asa_rm = factor(as.character(as.roman(asa)))
) %>%
select(Laryngoscope, BMI, asa_rm)
# needs to use GitHub release for grouped JS()
# remotes::install_github("glin/reactable")
library(reactable)
library(sparkline)
reactable(
lar_data,
groupBy = c("Laryngoscope", "asa_rm"),
columns = list(
asa_rm = colDef(
aggregate = "frequency",
grouped = JS("function(cellInfo) {return cellInfo.value}")
),
BMI = colDef(cell = function(value) {
sparkline(lar_data$BMI, type = "box")
})
),
bordered = TRUE
)
I have tried using split trace with scatterpolar and it seems to partly work but can't get it to plot the values for all 10 variables. So I want each row (identified by "ean") be plotted as its own line using the values from X1 to X10.
library(tidyverse)
library(vroom)
library(plotly)
types <- rep(times = 10, list(
col_integer(f = stats::runif,
min = 1,
max = 5)))
products = bind_cols(
tibble(ean = sample.int(1e9, 25)),
tibble(kategori = sample(c("kat1", "kat2", "kat3"), 25, replace = TRUE)),
gen_tbl(25, 10, col_types = types)
)
plot_ly(
products,
type = 'scatterpolar',
mode = "lines+markers",
r = ~X1,
theta = ~"X1",
split = ~ean
)
How can I get plotly to plot all variables in the radarchart (X1-X10)? Usually I would select the columns with X1:X10 but I can't do that here (I think it has to do with that ~ is used to select variable here).
So I want the result to look something like this (but I only show lines and not filled polygons and I would have more products). So in the end 25 products is a lot but I am connecting it so that the user can select the diagrams it wants to show.
In plotly it's convenient to use data in long format - see ?gather.
Please check the following:
library(dplyr)
library(tidyr)
library(vroom)
library(plotly)
types <- rep(times = 10, list(
col_integer(f = stats::runif,
min = 1,
max = 5)))
products = bind_cols(
tibble(ean = sample.int(1e9, 25)),
tibble(kategori = sample(c("kat1", "kat2", "kat3"), 25, replace = TRUE)),
gen_tbl(25, 10, col_types = types)
)
products_long <- gather(products, "key", "value", -ean, -kategori)
plot_ly(
products_long,
type = 'scatterpolar',
mode = "lines+markers",
r = ~value,
theta = ~key,
split = ~ean
)
I have boxplots on highcharter and I would like to customize both the
Fill color
Border color
Here is my code
df = data.frame(cbind(categ = rep(c('a','b','c','d')),value = rnorm(1000)))
hcboxplot(var = df$categ, x = as.numeric(df$value)) %>%
hc_chart(type = "column") %>%
hc_colors(c("#203d7d","#a0a0ed","#203d7e","#a0a0ad"))
The hc_colors works only if I put var2 instead of var but then the box plot are shrunken...
API for styling fillColor: https://api.highcharts.com/highcharts/series.boxplot.fillColor
And for "Border color": https://api.highcharts.com/highcharts/series.boxplot.color
Pure JavaScript example of how to style and define points: https://jsfiddle.net/BlackLabel/6tud3fgx
And R code:
library(highcharter)
df = data.frame(cbind(categ = rep(c('a','b','c','d', 'e')),value = rnorm(1000)))
hcboxplot(var = df$categ, x = as.numeric(df$value)) %>%
hc_chart(type = "column", events = list(
load = JS("function() {
var chart = this;
chart.series[0].points[2].update({
color: 'red'
})
chart.series[0].points[4].update({
x: 4,
low: 600,
q1: 700,
median: 800,
q3: 900,
high: 1000,
color: 'orange'
})
}")
)) %>%
hc_plotOptions(boxplot = list(
fillColor = '#F0F0E0',
lineWidth = 2,
medianColor = '#0C5DA5',
medianWidth = 3,
stemColor = '#A63400',
stemDashStyle = 'dot',
stemWidth = 1,
whiskerColor = '#3D9200',
whiskerLength = '20%',
whiskerWidth = 3,
color = 'black'
)) %>%
hc_colors(c("#203d7d","#a0a0ed","#203d7e","#a0a0ad"))
I made a couple functions to do some stuff with highcharts and boxplots. It will let you color each boxplot and fill it accordingly, and then inject new graphical parameters according to the Highcharts API, should you desire.
Check it out:
## Boxplots Data and names, note the data index (0,1,2) is the first number in the datum
series<- list(
list(
name="a",
data=list(c(0,1,2,3,4,5))
),
list(
name="b",
data=list(c(1,2,3,4,5,6))
),
list(
name="c",
data=list(c(2,3,4,5,6,7))
)
)
# Graphical attribute to be set: fillColor.
# Make the colors for the box fill and then also the box lines (make them match so it looks pretty)
cols<- viridisLite::viridis(n= length(series2), alpha = 0.5) # Keeping alpha in here! (for box fill)
cols2<- substr(cols, 0,7) # no alpha, pure hex truth, for box lines
gen_key_vector<-function(variable, num_times){
return(rep(variable, num_times))
}
kv<- gen_key_vector(variable = "fillColor", length(series))
# Make a function to put stuff in the 'series' list, requires seq_along to be used since x is the list/vector index tracker
add_variable_to_series_list<- function(x, series_list, key_vector, value_vector){
base::stopifnot(length(key_vector) == length(value_vector))
base::stopifnot(length(series_list) == length(key_vector))
series_list[[x]][length(series_list[[x]])+1]<- value_vector[x]
names(series_list[[x]])[length(series_list[[x]])]<- key_vector[x]
return(series_list[[x]])
}
## Put the extra stuff in the 'series' list
series2<- lapply(seq_along(series), function(x){ add_variable_to_series_list(x = x, series_list = series, key_vector = kv, value_vector = cols) })
hc<- highcharter::highchart() %>%
highcharter::hc_chart(type="boxplot", inverted=FALSE) %>%
highcharter::hc_title(text="This is a title") %>%
highcharter::hc_legend(enabled=FALSE) %>%
highcharter::hc_xAxis(type="category", categories=c("a", "b", "c"), title=list(text="Some x-axis title")) %>%
highcharter::hc_add_series_list(series2) %>%
hc_plotOptions(series = list(
marker = list(
symbol = "circle"
),
grouping=FALSE
)) %>%
highcharter::hc_colors(cols2) %>%
highcharter::hc_exporting(enabled=TRUE)
hc
This probably could be adjusted to work with a simple dataframe, but I think it will get you what you want for right now without having to do too much extra work. Also, maybe look into list_parse or list_parse2' fromhighcharter...it could probably help with building out theseries` object..I still need to look into that.
Edit:
I have expanded the example to make it work with a regular DF. As per some follow up questions, the colors are set using the viridis palette inside the make_highchart_boxplot_with_colored_factors function. If you want to allow your own palette and colors, you could expose those arguments and just include them as parameters inside the function call. The expanded example borrows how to add outliers from the highcharter library (albeit in a hacky way) and then builds everything else up from scratch. Hopefully this helps clarify my previous answer. Please note, I could probably also clean up the if condition to make it a little more brief, but I kept it verbose for illustrative purposes.
Double Edit: You can now specify a vector of colors for each level of the factor variable
library(highcharter)
library(magrittr)
library(viridisLite)
df = data.frame(cbind(categ = rep(c('a','b','c','d')),value = rnorm(1000)))
df$value<- base::as.numeric(df$value)
add_variable_to_series_list<- function(x, series_list, key_vector, value_vector){
base::stopifnot(length(key_vector) == length(value_vector))
base::stopifnot(length(series_list) == length(key_vector))
series_list[[x]][length(series_list[[x]])+1]<- value_vector[x]
names(series_list[[x]])[length(series_list[[x]])]<- key_vector[x]
return(series_list[[x]])
}
# From highcharter github pages:
hc_add_series_bwpout = function(hc, value, by, ...) {
z = lapply(levels(by), function(x) {
bpstats = boxplot.stats(value[by == x])$stats
outliers = c()
for (y in na.exclude(value[by == x])) {
if ((y < bpstats[1]) | (y > bpstats[5]))
outliers = c(outliers, list(which(levels(by)==x)-1, y))
}
outliers
})
hc %>%
hc_add_series(data = z, type="scatter", ...)
}
gen_key_vector<-function(variable, num_times){
return(rep(variable, num_times))
}
gen_boxplot_series_from_df<- function(value, by,...){
value<- base::as.numeric(value)
by<- base::as.factor(by)
box_names<- levels(by)
z=lapply(box_names, function(x) {
boxplot.stats(value[by==x])$stats
})
tmp<- lapply(seq_along(z), function(x){
var_name_list<- list(box_names[x])
#tmp0<- list(names(df)[x])
names(var_name_list)<- "name"
index<- x-1
tmp<- list(c(index, z[[x]]))
tmp<- list(tmp)
names(tmp)<- "data"
tmp_out<- c(var_name_list, tmp)
#tmp<- list(tmp)
return(tmp_out)
})
return(tmp)
}
# Usage:
#series<- gen_boxplot_series_from_df(value = df$total_value, by=df$asset_class)
## Boxplot function:
make_highchart_boxplot_with_colored_factors<- function(value, by, chart_title="Boxplots",
chart_x_axis_label="Values", show_outliers=FALSE,
boxcolors=NULL, box_line_colors=NULL){
by<- as.factor(by)
box_names_to_use<- levels(by)
series<- gen_boxplot_series_from_df(value = value, by=by)
if(is.null(boxcolors)){
cols<- viridisLite::viridis(n= length(series), alpha = 0.5) # Keeping alpha in here! (COLORS FOR BOXES ARE SET HERE)
} else {
cols<- boxcolors
}
if(is.null(box_line_colors)){
if(base::nchar(cols[[1]])==9){
cols2<- substr(cols, 0,7) # no alpha, pure hex truth, for box lines
} else {
cols2<- cols
}
} else {
cols2<- box_line_colors
}
# Injecting value 'fillColor' into series list
kv<- gen_key_vector(variable = "fillColor", length(series))
series2<- lapply(seq_along(series), function(x){ add_variable_to_series_list(x = x, series_list = series, key_vector = kv, value_vector = cols) })
if(show_outliers == TRUE){
hc<- highcharter::highchart() %>%
highcharter::hc_chart(type="boxplot", inverted=FALSE) %>%
highcharter::hc_title(text=chart_title) %>%
highcharter::hc_legend(enabled=FALSE) %>%
highcharter::hc_xAxis(type="category", categories=box_names_to_use, title=list(text=chart_x_axis_label)) %>%
highcharter::hc_add_series_list(series2) %>%
hc_add_series_bwpout(value = value, by=by, name="Outliers") %>%
hc_plotOptions(series = list(
marker = list(
symbol = "circle"
),
grouping=FALSE
)) %>%
highcharter::hc_colors(cols2) %>%
highcharter::hc_exporting(enabled=TRUE)
} else{
hc<- highcharter::highchart() %>%
highcharter::hc_chart(type="boxplot", inverted=FALSE) %>%
highcharter::hc_title(text=chart_title) %>%
highcharter::hc_legend(enabled=FALSE) %>%
highcharter::hc_xAxis(type="category", categories=box_names_to_use, title=list(text=chart_x_axis_label)) %>%
highcharter::hc_add_series_list(series2) %>%
hc_plotOptions(series = list(
marker = list(
symbol = "circle"
),
grouping=FALSE
)) %>%
highcharter::hc_colors(cols2) %>%
highcharter::hc_exporting(enabled=TRUE)
}
hc
}
# Usage:
tst_box<- make_highchart_boxplot_with_colored_factors(value = df$value, by=df$categ, chart_title = "Some Title", chart_x_axis_label = "Some X Axis", show_outliers = TRUE)
tst_box
# Custom Colors:
custom_colors_with_alpha_in_hex<- paste0(gplots::col2hex(sample(x=colors(), size = length(unique(df$categ)), replace = FALSE)), "80")
tst_box2<- make_highchart_boxplot_with_colored_factors(value = df$value, by=df$categ, chart_title = "Some Title",
chart_x_axis_label = "Some X Axis",
show_outliers = TRUE, boxcolors = custom_colors_with_alpha_in_hex)
tst_box2
tst_box3<- make_highchart_boxplot_with_colored_factors(value = df$value, by=df$categ, chart_title = "Some Title",
chart_x_axis_label = "Some X Axis",
show_outliers = TRUE, boxcolors = custom_colors_with_alpha_in_hex, box_line_colors = "black")
tst_box3
I hope this helps, please let me know if you have any more questions. I'm happy to try to help as best I can.
-nate
Since there's no highcharter answer yet, I give you at least a base solution.
First, your definition of the data frame is somewhat flawed, rather do:
dat <- data.frame(categ=c('a','b','c','d'), value=rnorm(1000))
Now, using boxplot is quite straightforward. border option colors your borders. With option col you also could color the fills.
boxplot(value ~ categ, dat, border=c("#203d7d","#a0a0ed","#203d7e","#a0a0ad"), pars=list(outpch=16))
Gives
Note: See this nice solution for further customizations.
I have some tables in Microsoft Excel that I need to recreate in an R Shiny App. The formatting in R has to remain at least mostly the same as the original context.
Here are images of the original tables:
Table 1
Table 2
Notice the formatting: There are lines under table headers and above totals, headers and totals are bolded, numbers in the Monthly Bill column have thousands seperated by commas and have dollar symbols, and the final number in Table 2 is boxed in.
If the lines were not recreatable it would be fine, but I need to at least be able to bold the selected topics, headers, and totals, and be able to get the correct number format for the Monthly Bill column.
I have tried using the DT package but I can't figure out how to format rows instead of columns. I noticed DT uses wrappers for JavaScript functions but I don't personally know JavaScript myself. Is there a way to format this the way I that I need through R packages or Javascript?
Edit:
Although it would be simple, I cannot merely include an image of the tables because some of the numbers are going to be linked to user input and must have the ability to update.
pixiedust makes it easy to do cell-specific customizations.
T1 <- data.frame(Charge = c("Environmental", "Base Power Cost",
"Base Adjustment Cost", "Distribution Adder",
"Retail Rate Without Fuel", "Fuel Charge Adjustment",
"Retail Rate With Fuel"),
Summer = c(0.00303, 0.06018, 0.00492, 0.00501, 0.07314,
0.02252, 0.09566),
Winter = c(0.00303, 0.05707, 0.00468, 0.01264, 0.07742,
0.02252, 0.09994),
Transition = c(0.00303, 0.05585, 0.00459, 0.01264,
0.07611, 0.02252, 0.09863),
stringsAsFactors = FALSE)
T2 <- data.frame(Period = c("Summer", "Winter", "Transition", "Yearly Bill"),
Rate = c(0.09566, 0.09994, 0.09863, NA),
Monthly = c(118.16, 122.44, 121.13, 1446.92),
stringsAsFactors = FALSE)
library(shiny)
library(pixiedust)
library(dplyr)
options(pixiedust_print_method = "html")
shinyApp(
ui =
fluidPage(
uiOutput("table1"),
uiOutput("table2")
),
server =
shinyServer(function(input, output, session){
output$table1 <-
renderUI({
dust(T1) %>%
sprinkle(rows = 1,
border = "bottom",
part = "head") %>%
sprinkle(rows = c(5, 7),
cols = 2:4,
border = "top") %>%
sprinkle(rows = c(5, 7),
bold = TRUE) %>%
sprinkle(pad = 4) %>%
sprinkle_colnames(Charge = "") %>%
print(asis = FALSE) %>%
HTML()
})
output$table2 <-
renderUI({
T2 %>%
mutate(Monthly = paste0("$", trimws(format(Monthly, big.mark = ",")))) %>%
dust() %>%
sprinkle(rows = 1,
border = "bottom",
part = "head") %>%
sprinkle(rows = 4,
cols = 1,
bold = TRUE) %>%
sprinkle(rows = 4,
cols = 3,
border = "all") %>%
sprinkle(na_string = "",
pad = 4) %>%
sprinkle_colnames(Period = "",
Monthly = "Monthly Bill") %>%
print(asis = FALSE) %>%
HTML()
})
})
)
This would be easier if you provided an example of your data, but sticking with DT, you should be able to utilize formatStyle to change formatting of both rows and columns. For an example to bold the first row, see the following (assuming your data frame is called df):
df %>%
datatable() %>%
formatStyle(
0,
target = "row",
fontWeight = styleEqual(1, "bold")
)
The rstudio DT page offers more examples: http://rstudio.github.io/DT/010-style.html
Alternatively, I think you might be better off using the stargazer package.
The base plot would look very similar to your desired result.
stargazer::stargazer(df, type = "html", title = "Table 1")
That will get you started, but see here for a LOT more flexibility: https://www.jakeruss.com/cheatsheets/stargazer/