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I am trying to read a .tif-file in julia as a Floating Point Array. With the FileIO & ImageMagick-Package I am able to do this, but the Array that I get is of the Type Array{ColorTypes.Gray{FixedPointNumbers.Normed{UInt8,8}},2}.
I can convert this FixedPoint-Array to Float32-Array by multiplying it with 255 (because UInt8), but I am looking for a function to do this for any type of FixedPointNumber (i.e. reinterpret() or convert()).
using FileIO
# Load the tif
obj = load("test.tif");
typeof(obj)
# Convert to Float32-Array
objNew = real.(obj) .* 255
typeof(objNew)
The output is
julia> using FileIO
julia> obj = load("test.tif");
julia> typeof(obj)
Array{ColorTypes.Gray{FixedPointNumbers.Normed{UInt8,8}},2}
julia> objNew = real.(obj) .* 255;
julia> typeof(objNew)
Array{Float32,2}
I have been looking in the docs quite a while and have not found the function with which to convert a given FixedPoint-Array to a FloatingPont-Array without multiplying it with the maximum value of the Integer type.
Thanks for any help.
edit:
I made a small gist to see if the solution by Michael works, and it does. Thanks!
Note:I don't know why, but the real.(obj) .* 255-code does not work (see the gist).
Why not just Float32.()?
using ColorTypes
a = Gray.(convert.(Normed{UInt8,8}, rand(5,6)));
typeof(a)
#Array{ColorTypes.Gray{FixedPointNumbers.Normed{UInt8,8}},2}
Float32.(a)
The short answer is indeed the one given by Michael, just use Float32.(a) (for grayscale). Another alternative is channelview(a), which generally performs channel separation thus also stripping the color information from the array. In the latter case you won't get a Float32 array, because your image is stored with 8 bits per pixel, instead you'll get an N0f8 (= FixedPointNumbers.Normed{UInt8,8}). You can read about those numbers here.
Your instinct to multiply by 255 is natural, given how other image-processing frameworks work, but Julia has made some effort to be consistent about "meaning" in ways that are worth taking a moment to think about. For example, in another programming language just changing the numerical precision of an array:
img = uint8(255*rand(10, 10, 3)); % an 8-bit per color channel image
figure; image(img)
imgd = double(img); % convert to double-precision, but don't change the values
figure; image(imgd)
produces the following surprising result:
That second "all white" image represents saturation. In this other language, "5" means two completely different things depending on whether it's stored in memory as a UInt8 vs a Float64. I think it's fair to say that under any normal circumstances, a user of a numerical library would call this a bug, and a very serious one at that, yet somehow many of us have grown to accept this in the context of image processing.
These new types arise because in Julia we've gone to the effort to implement new numerical types (FixedPointNumbers) that act like fractional values (e.g., between 0 and 1) but are stored internally with the same bit pattern as the "corresponding" UInt8 (the one you get by multiplying by 255). This allows us to work with 8-bit data and yet allow values to always be interpreted on a consistent scale (0.0=black, 1.0=white).
Working through the first edition of "Introduction to Functional Programming", by Bird & Wadler, which uses a theoretical lazy language with Haskell-ish syntax.
Exercise 3.2.3 asks:
Using a list comprehension, define a function for counting the number
of negative numbers in a list
Now, at this point we're still scratching the surface of lists. I would assume the intention is that only concepts that have been introduced at that point should be used, and the following have not been introduced yet:
A function for computing list length
List indexing
Pattern matching i.e. f (x:xs) = ...
Infinite lists
All the functions and operators that act on lists - with one exception - e.g. ++, head, tail, map, filter, zip, foldr, etc
What tools are available?
A maximum function that returns the maximal element of a numeric list
List comprehensions, with possibly multiple generator expressions and predicates
The notion that the output of the comprehension need not depend on the generator expression, implying the generator expression can be used for controlling the size of the generated list
Finite arithmetic sequence lists i.e. [a..b] or [a, a + step..b]
I'll admit, I'm stumped. Obviously one can extract the negative numbers from the original list fairly easily with a comprehension, but how does one then count them, with no notion of length or indexing?
The availability of the maximum function would suggest the end game is to construct a list whose maximal element is the number of negative numbers, with the final result of the function being the application of maximum to said list.
I'm either missing something blindingly obvious, or a smart trick, with a horrible feeling it may be the former. Tell me SO, how do you solve this?
My old -- and very yellowed copy of the first edition has a note attached to Exercise 3.2.3: "This question needs # (length), which appears only later". The moral of the story is to be more careful when setting exercises. I am currently finishing a third edition, which contains answers to every question.
By the way, did you answer Exercise 1.2.1 which asks for you to write down all the ways that
square (square (3 + 7)) can be reduced to normal form. It turns out that there are 547 ways!
I think you may be assuming too many restrictions - taking the length of the filtered list seems like the blindingly obvious solution to me.
An couple of alternatives but both involve using some other function that you say wasn't introduced:
sum [1 | x <- xs, x < 0]
maximum (0:[index | (index, ()) <- zip [1..] [() | x <- xs, x < 0]])
I have a function that takes a floating point number and returns a floating point number. It can be assumed that if you were to graph the output of this function it would be 'n' shaped, ie. there would be a single maximum point, and no other points on the function with a zero slope. We also know that input value that yields this maximum output will lie between two known points, perhaps 0.0 and 1.0.
I need to efficiently find the input value that yields the maximum output value to some degree of approximation, without doing an exhaustive search.
I'm looking for something similar to Newton's Method which finds the roots of a function, but since my function is opaque I can't get its derivative.
I would like to down-thumb all the other answers so far, for various reasons, but I won't.
An excellent and efficient method for minimizing (or maximizing) smooth functions when derivatives are not available is parabolic interpolation. It is common to write the algorithm so it temporarily switches to the golden-section search (Brent's minimizer) when parabolic interpolation does not progress as fast as golden-section would.
I wrote such an algorithm in C++. Any offers?
UPDATE: There is a C version of the Brent minimizer in GSL. The archives are here: ftp://ftp.club.cc.cmu.edu/gnu/gsl/ Note that it will be covered by some flavor of GNU "copyleft."
As I write this, the latest-and-greatest appears to be gsl-1.14.tar.gz. The minimizer is located in the file gsl-1.14/min/brent.c. It appears to have termination criteria similar to what I implemented. I have not studied how it decides to switch to golden section, but for the OP, that is probably moot.
UPDATE 2: I googled up a public domain java version, translated from FORTRAN. I cannot vouch for its quality. http://www1.fpl.fs.fed.us/Fmin.java I notice that the hard-coded machine efficiency ("machine precision" in the comments) is 1/2 the value for a typical PC today. Change the value of eps to 2.22045e-16.
Edit 2: The method described in Jive Dadson is a better way to go about this. I'm leaving my answer up since it's easier to implement, if speed isn't too much of an issue.
Use a form of binary search, combined with numeric derivative approximations.
Given the interval [a, b], let x = (a + b) /2
Let epsilon be something very small.
Is (f(x + epsilon) - f(x)) positive? If yes, the function is still growing at x, so you recursively search the interval [x, b]
Otherwise, search the interval [a, x].
There might be a problem if the max lies between x and x + epsilon, but you might give this a try.
Edit: The advantage to this approach is that it exploits the known properties of the function in question. That is, I assumed by "n"-shaped, you meant, increasing-max-decreasing. Here's some Python code I wrote to test the algorithm:
def f(x):
return -x * (x - 1.0)
def findMax(function, a, b, maxSlope):
x = (a + b) / 2.0
e = 0.0001
slope = (function(x + e) - function(x)) / e
if abs(slope) < maxSlope:
return x
if slope > 0:
return findMax(function, x, b, maxSlope)
else:
return findMax(function, a, x, maxSlope)
Typing findMax(f, 0, 3, 0.01) should return 0.504, as desired.
For optimizing a concave function, which is the type of function you are talking about, without evaluating the derivative I would use the secant method.
Given the two initial values x[0]=0.0 and x[1]=1.0 I would proceed to compute the next approximations as:
def next_x(x, xprev):
return x - f(x) * (x - xprev) / (f(x) - f(xprev))
and thus compute x[2], x[3], ... until the change in x becomes small enough.
Edit: As Jive explains, this solution is for root finding which is not the question posed. For optimization the proper solution is the Brent minimizer as explained in his answer.
The Levenberg-Marquardt algorithm is a Newton's method like optimizer. It has a C/C++ implementation levmar that doesn't require you to define the derivative function. Instead it will evaluate the objective function in the current neighborhood to move to the maximum.
BTW: this website appears to be updated since I last visited it, hope it's even the same one I remembered. Apparently it now also support other languages.
Given that it's only a function of a single variable and has one extremum in the interval, you don't really need Newton's method. Some sort of line search algorithm should suffice. This wikipedia article is actually not a bad starting point, if short on details. Note in particular that you could just use the method described under "direct search", starting with the end points of your interval as your two points.
I'm not sure if you'd consider that an "exhaustive search", but it should actually be pretty fast I think for this sort of function (that is, a continuous, smooth function with only one local extremum in the given interval).
You could reduce it to a simple linear fit on the delta's, finding the place where it crosses the x axis. Linear fit can be done very quickly.
Or just take 3 points (left/top/right) and fix the parabola.
It depends mostly on the nature of the underlying relation between x and y, I think.
edit this is in case you have an array of values like the question's title states. When you have a function take Newton-Raphson.
In C the atan2 function has the following signature:
double atan2( double y, double x );
Other languages do this as well. This is the only function I know of that takes its arguments in Y,X order rather than X,Y order, and it screws me up regularly because when I think coordinates, I think (X,Y).
Does anyone know why atan2's argument order convention is this way?
Because I believe it is related to arctan(y/x), so y appears on top.
Here's a nice link talking about it a bit: Angles and Directions
My assumption has always been that this is because of the trig definition, ie that
tan(theta) = opposite / adjacent
When working with the canonical angle from the origin, opposite is always Y and adjacent is always X, so:
atan2(opposite, adjacent) = theta
Ie, it was done that way so there's no ordering confusion with respect to the mathematical definition.
Suppose a rectangle triangle with its opposite side called y, adjacent side called x:
tan(angle) = y/x
arctan(tan(angle)) = arctan(y/x)
It's because in school, the mnemonic for calculating the gradient
is rise over run, or in other words dy/dx, or more briefly y/x.
And this order has snuck into the arguments of arctangent functions.
So it's a historical artefact. For me it depends on what I'm thinking
about when I use atan2. If I'm thinking about differentials, I get it right
and if I'm thinking about coordinate pairs, I get it wrong.
The order is atan2(X,Y) in excel so I think the reverse order is a programming thing. atan(Y/X) can easily be changed to atan2(Y,X) by putting a '2' between the 'n' and the '(', and replacing the '/' with a ',', only 2 operations. The opposite order would take 4 operations and some of the operations would be more complex (cut and paste).
I often work out my math in Excel then port it to .NET, so will get hung up on atan2 sometimes. It would be best if atan2 could be standardized one way or the other.
It would be more convenient if atan2 had its arguments reversed. Then you wouldn't need to worry about flipping the arguments when computing polar angles. The Mathematica equivalent does just that: https://reference.wolfram.com/language/ref/ArcTan.html
Way back in the dawn of time, FORTRAN had an ATAN2 function with the less convenient argument order that, in this reference manual, is (somewhat inaccurately) described as arctan(arg1 / arg2).
It is plausible that the initial creator was fixated on atan2(arg1, arg2) being (more or less) arctan(arg1 / arg2), and that the decision was blindly copied from FORTRAN to C to C++ and Python and Java and JavaScript.
As a programmer I think it is my job to be good at math but I am having trouble getting my head round imaginary numbers. I have tried google and wikipedia with no luck so I am hoping a programmer can explain in to me, give me an example of a number squared that is <= 0, some example usage etc...
I guess this blog entry is one good explanation:
The key word is rotation (as opposed to direction for negative numbers, which are as stranger as imaginary number when you think of them: less than nothing ?)
Like negative numbers modeling flipping, imaginary numbers can model anything that rotates between two dimensions “X” and “Y”. Or anything with a cyclic, circular relationship
Problem: not only am I a programmer, I am a mathematician.
Solution: plow ahead anyway.
There's nothing really magical to complex numbers. The idea behind their inception is that there's something wrong with real numbers. If you've got an equation x^2 + 4, this is never zero, whereas x^2 - 2 is zero twice. So mathematicians got really angry and wanted there to always be zeroes with polynomials of degree at least one (wanted an "algebraically closed" field), and created some arbitrary number j such that j = sqrt(-1). All the rules sort of fall into place from there (though they are more accurately reorganized differently-- specifically, you formally can't actually say "hey this number is the square root of negative one"). If there's that number j, you can get multiples of j. And you can add real numbers to j, so then you've got complex numbers. The operations with complex numbers are similar to operations with binomials (deliberately so).
The real problem with complexes isn't in all this, but in the fact that you can't define a system whereby you can get the ordinary rules for less-than and greater-than. So really, you get to where you don't define it at all. It doesn't make sense in a two-dimensional space. So in all honesty, I can't actually answer "give me an exaple of a number squared that is <= 0", though "j" makes sense if you treat its square as a real number instead of a complex number.
As for uses, well, I personally used them most when working with fractals. The idea behind the mandelbrot fractal is that it's a way of graphing z = z^2 + c and its divergence along the real-imaginary axes.
You might also ask why do negative numbers exist? They exist because you want to represent solutions to certain equations like: x + 5 = 0. The same thing applies for imaginary numbers, you want to compactly represent solutions to equations of the form: x^2 + 1 = 0.
Here's one way I've seen them being used in practice. In EE you are often dealing with functions that are sine waves, or that can be decomposed into sine waves. (See for example Fourier Series).
Therefore, you will often see solutions to equations of the form:
f(t) = A*cos(wt)
Furthermore, often you want to represent functions that are shifted by some phase from this function. A 90 degree phase shift will give you a sin function.
g(t) = B*sin(wt)
You can get any arbitrary phase shift by combining these two functions (called inphase and quadrature components).
h(t) = Acos(wt) + iB*sin(wt)
The key here is that in a linear system: if f(t) and g(t) solve an equation, h(t) will also solve the same equation. So, now we have a generic solution to the equation h(t).
The nice thing about h(t) is that it can be written compactly as
h(t) = Cexp(wt+theta)
Using the fact that exp(iw) = cos(w)+i*sin(w).
There is really nothing extraordinarily deep about any of this. It is merely exploiting a mathematical identity to compactly represent a common solution to a wide variety of equations.
Well, for the programmer:
class complex {
public:
double real;
double imaginary;
complex(double a_real) : real(a_real), imaginary(0.0) { }
complex(double a_real, double a_imaginary) : real(a_real), imaginary(a_imaginary) { }
complex operator+(const complex &other) {
return complex(
real + other.real,
imaginary + other.imaginary);
}
complex operator*(const complex &other) {
return complex(
real*other.real - imaginary*other.imaginary,
real*other.imaginary + imaginary*other.real);
}
bool operator==(const complex &other) {
return (real == other.real) && (imaginary == other.imaginary);
}
};
That's basically all there is. Complex numbers are just pairs of real numbers, for which special overloads of +, * and == get defined. And these operations really just get defined like this. Then it turns out that these pairs of numbers with these operations fit in nicely with the rest of mathematics, so they get a special name.
They are not so much numbers like in "counting", but more like in "can be manipulated with +, -, *, ... and don't cause problems when mixed with 'conventional' numbers". They are important because they fill the holes left by real numbers, like that there's no number that has a square of -1. Now you have complex(0, 1) * complex(0, 1) == -1.0 which is a helpful notation, since you don't have to treat negative numbers specially anymore in these cases. (And, as it turns out, basically all other special cases are not needed anymore, when you use complex numbers)
If the question is "Do imaginary numbers exist?" or "How do imaginary numbers exist?" then it is not a question for a programmer. It might not even be a question for a mathematician, but rather a metaphysician or philosopher of mathematics, although a mathematician may feel the need to justify their existence in the field. It's useful to begin with a discussion of how numbers exist at all (quite a few mathematicians who have approached this question are Platonists, fyi). Some insist that imaginary numbers (as the early Whitehead did) are a practical convenience. But then, if imaginary numbers are merely a practical convenience, what does that say about mathematics? You can't just explain away imaginary numbers as a mere practical tool or a pair of real numbers without having to account for both pairs and the general consequences of them being "practical". Others insist in the existence of imaginary numbers, arguing that their non-existence would undermine physical theories that make heavy use of them (QM is knee-deep in complex Hilbert spaces). The problem is beyond the scope of this website, I believe.
If your question is much more down to earth e.g. how does one express imaginary numbers in software, then the answer above (a pair of reals, along with defined operations of them) is it.
I don't want to turn this site into math overflow, but for those who are interested: Check out "An Imaginary Tale: The Story of sqrt(-1)" by Paul J. Nahin. It talks about all the history and various applications of imaginary numbers in a fun and exciting way. That book is what made me decide to pursue a degree in mathematics when I read it 7 years ago (and I was thinking art). Great read!!
The main point is that you add numbers which you define to be solutions to quadratic equations like x2= -1. Name one solution to that equation i, the computation rules for i then follow from that equation.
This is similar to defining negative numbers as the solution of equations like 2 + x = 1 when you only knew positive numbers, or fractions as solutions to equations like 2x = 1 when you only knew integers.
It might be easiest to stop trying to understand how a number can be a square root of a negative number, and just carry on with the assumption that it is.
So (using the i as the square root of -1):
(3+5i)*(2-i)
= (3+5i)*2 + (3+5i)*(-i)
= 6 + 10i -3i - 5i * i
= 6 + (10 -3)*i - 5 * (-1)
= 6 + 7i + 5
= 11 + 7i
works according to the standard rules of maths (remembering that i squared equals -1 on line four).
An imaginary number is a real number multiplied by the imaginary unit i. i is defined as:
i == sqrt(-1)
So:
i * i == -1
Using this definition you can obtain the square root of a negative number like this:
sqrt(-3)
== sqrt(3 * -1)
== sqrt(3 * i * i) // Replace '-1' with 'i squared'
== sqrt(3) * i // Square root of 'i squared' is 'i' so move it out of sqrt()
And your final answer is the real number sqrt(3) multiplied by the imaginary unit i.
A short answer: Real numbers are one-dimensional, imaginary numbers add a second dimension to the equation and some weird stuff happens if you multiply...
If you're interested in finding a simple application and if you're familiar with matrices,
it's sometimes useful to use complex numbers to transform a perfectly real matrice into a triangular one in the complex space, and it makes computation on it a bit easier.
The result is of course perfectly real.
Great answers so far (really like Devin's!)
One more point:
One of the first uses of complex numbers (although they were not called that way at the time) was as an intermediate step in solving equations of the 3rd degree.
link
Again, this is purely an instrument that is used to answer real problems with real numbers having physical meaning.
In electrical engineering, the impedance Z of an inductor is jwL, where w = 2*pi*f (frequency) and j (sqrt(-1))means it leads by 90 degrees, while for a capacitor Z = 1/jwc = -j/wc which is -90deg/wc so that it lags a simple resistor by 90 deg.