I am trying to install RWeka in RStudio 1.2.5033
I have tried many different ways to install it, I re-installed Java64. Here is my latest try:
install.packages("rJava")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/Jesse's PC/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
There is a binary version available but the source version is later:
binary source needs_compilation
rJava 0.9-12 0.9-13 TRUE
installing the source package ‘rJava’
trying URL 'https://cran.rstudio.com/src/contrib/rJava_0.9-13.tar.gz'
Content type 'application/x-gzip' length 664898 bytes (649 KB)
downloaded 649 KB
* installing *source* package 'rJava' ...
** package 'rJava' successfully unpacked and MD5 sums checked
** using staged installation
Generate Windows-specific files (src/jvm-w32) ...
make: Entering directory '/c/Users/JESSE'~1/AppData/Local/Temp/RtmpuOekjT/R.INSTALL24344ae86868/rJava/src/jvm-w32'
c:/Rtools/mingw_64/bin/dlltool --as c:/Rtools/mingw_64/bin/as --input-def jvm64.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a
make: c:/Rtools/mingw_64/bin/dlltool: Command not found
make: *** [Makefile:20: libjvm.dll.a] Error 127
make: Leaving directory '/c/Users/JESSE'~1/AppData/Local/Temp/RtmpuOekjT/R.INSTALL24344ae86868/rJava/src/jvm-w32'
ERROR: configuration failed for package 'rJava'
* removing 'C:/Users/Jesse's PC/Documents/R/win-library/3.6/rJava'
* restoring previous 'C:/Users/Jesse's PC/Documents/R/win-library/3.6/rJava'
Warning in install.packages :
installation of package ‘rJava’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\Jesse's PC\AppData\Local\Temp\Rtmps5Y5TC\downloaded_packages’
Related
I cannot install rgeos or rgdal packages in R version 4.1.3. These packages worked fine a month ago before I reformatted my computer and reinstalled R.
This is what I have tried:
install.packages('rgeos', type="source")
install.packages('rgdal', type="source")
This is the message I get when installing - and I DO have Rtools installed.
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/bhauptman/Documents/R/win-library/4.1’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/rgeos_0.5-9.tar.gz'
Content type 'application/x-gzip' length 290240 bytes (283 KB)
downloaded 283 KB
* installing *source* package 'rgeos' ...
** package 'rgeos' successfully unpacked and MD5 sums checked
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
Warning in system(cmd) : 'make' not found
ERROR: compilation failed for package 'rgeos'
* removing 'C:/Users/bhauptman/Documents/R/win-library/4.1/rgeos'
* restoring previous 'C:/Users/bhauptman/Documents/R/win-library/4.1/rgeos'
Warning in install.packages :
installation of package ‘rgeos’ had non-zero exit status
The downloaded source packages are in ‘C:\Users\bhauptman\AppData\Local\Temp\Rtmp0sTf6q\downloaded_packages’
On my Macbook 10.15 in RStudio I attempted to install ggplot2, however I get errors for dependencies related to digest and rlang. I did perform a xcode-select --install to install that and also rebooted my Mac.
However it seems R can't locate xcode.
I notice that the error messages complain about the xcode path. Is this a red herring or is that the root of the problem?
Metroids-MacBook-Air:~ metroid$ xcode-select -p
/Applications/Xcode.app/Contents/Developer
What should the path be set to and why isn't it set by default?
Any thoughts?
Please see below:
> install.packages("ggplot2")
also installing the dependencies ‘digest’, ‘rlang’
There are binary versions available but the source versions are later:
binary source needs_compilation
digest 0.6.21 0.6.22 TRUE
rlang 0.4.0 0.4.1 TRUE
Do you want to install from sources the packages which need compilation? (Yes/no/cancel) Yes
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/ggplot2_3.2.1.tgz'
Content type 'application/x-gzip' length 3973186 bytes (3.8 MB)
==================================================
downloaded 3.8 MB
The downloaded binary packages are in
/var/folders/q5/pqd495t95fq3tjtbxbdsvv_00000gn/T//Rtmp8aJzND/downloaded_packages
installing the source packages ‘digest’, ‘rlang’
trying URL 'https://cran.rstudio.com/src/contrib/digest_0.6.22.tar.gz'
Content type 'application/x-gzip' length 141968 bytes (138 KB)
==================================================
downloaded 138 KB
trying URL 'https://cran.rstudio.com/src/contrib/rlang_0.4.1.tar.gz'
Content type 'application/x-gzip' length 797012 bytes (778 KB)
==================================================
downloaded 778 KB
* installing *source* package ‘digest’ ...
** package ‘digest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
dyld: Symbol not found: _kConditionalConnectionRequirementTimeWindowStartTime
Referenced from: /Applications/Xcode.app/Contents/Developer/usr/bin/../../../SharedFrameworks/DVTFoundation.framework/Versions/A/DVTFoundation
Expected in: /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
in /Applications/Xcode.app/Contents/Developer/usr/bin/../../../SharedFrameworks/DVTFoundation.framework/Versions/A/DVTFoundation
make: error: unable to locate xcodebuild, please make sure the path to the Xcode folder is set correctly!
make: error: You can set the path to the Xcode folder using /usr/bin/xcode-select -switch
ERROR: compilation failed for package ‘digest’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/digest’
Warning in install.packages :
installation of package ‘digest’ had non-zero exit status
* installing *source* package ‘rlang’ ...
** package ‘rlang’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
dyld: Symbol not found: _kConditionalConnectionRequirementTimeWindowStartTime
Referenced from: /Applications/Xcode.app/Contents/Developer/usr/bin/../../../SharedFrameworks/DVTFoundation.framework/Versions/A/DVTFoundation
Expected in: /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
in /Applications/Xcode.app/Contents/Developer/usr/bin/../../../SharedFrameworks/DVTFoundation.framework/Versions/A/DVTFoundation
make: error: unable to locate xcodebuild, please make sure the path to the Xcode folder is set correctly!
make: error: You can set the path to the Xcode folder using /usr/bin/xcode-select -switch
ERROR: compilation failed for package ‘rlang’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rlang’
Warning in install.packages :
installation of package ‘rlang’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/q5/pqd495t95fq3tjtbxbdsvv_00000gn/T/Rtmp8aJzND/downloaded_packages’
>
I'm trying to use the package rDEA. I have most recent r version 3.4.4 ("Someone to Lean On"). I'm using most recent R Studio 1.1.423.
I get the error compilation failed for package 'rDEA'. Can anyone help?
Precise details:
install.packages("rDEA")
Package which is only available in source form, and may need
compilation of C/C++/Fortran: ‘rDEA’
Do you want to attempt to install these from sources?
y/n:
I type y, and get the following:
installing the source package ‘rDEA’
trying URL 'https://cran.rstudio.com/src/contrib/rDEA_1.2-5.tar.gz'
Content type 'application/x-gzip' length 57007 bytes (55 KB)
==================================================
downloaded 55 KB
* installing *source* package ‘rDEA’ ...
** package ‘rDEA’ successfully unpacked and MD5 sums checked
** libs
/bin/sh: line 0: cd: GLPK: No such file or directory
make: *** [GLPK.ts] Error 1
ERROR: compilation failed for package ‘rDEA’
* removing
‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rDEA’
Warning in install.packages :
installation of package ‘rDEA’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/b1/_pstgqks0r3gb3t972tk8zh00000gn/T/RtmpuvqGid/downloaded_packages’
I want to read hdf4(MODIS) files in R using rgdal package, so I downloaded the additional hdf4 drivers by OSGeo4W, and then tried to install rgdal using source. The result is shown below:
install.packages("rgdal",type = "source")
Installing package into ‘C:/Users/dell/Documents/R/win-library/3.3’
(as ‘lib’ is unspecified) trying URL
'https://mirrors.ustc.edu.cn/CRAN/src/contrib/rgdal_1.2-5.tar.gz'
Content type 'application/gzip' length 1652472 bytes (1.6 MB)
downloaded 1.6 MB
installing source package 'rgdal' ...
** package 'rgdal' successfully unpacked and MD5 sums checked Warning: running command 'sh ./configure.win' had status 127 ERROR:
configuration failed for package 'rgdal'
removing 'C:/Users/dell/Documents/R/win-library/3.3/rgdal' Warning in install.packages : running command
'"C:/PROGRA~1/R/R-33~1.3/bin/x64/R" CMD INSTALL -l
"C:\Users\dell\Documents\R\win-library\3.3"
C:\Users\dell\AppData\Local\Temp\Rtmpywb4tp/downloaded_packages/rgdal_1.2-5.tar.gz'
had status 1 Warning in install.packages : installation of package
‘rgdal’ had non-zero exit status
Is this method wrong, or missing some crucial steps? I use R in Windows 10.
I am trying to install Rsymphony to be able to install fPortfolio.
I get an error when I try to install it;
install.packages("Rsymphony")
Installing package into ‘C:/Users/Olve/Documents/R/win-library/3.3’
(as ‘lib’ is unspecified)
Package which is only available in source form, and
may need compilation of C/C++/Fortran: ‘Rsymphony’
Do you want to attempt to install these from sources?
y/n: y
installing the source package ‘Rsymphony’
trying URL 'http://cran.rstudio.com/src/contrib/Rsymphony_0.1-22.tar.gz'
Content type 'application/x-gzip' length 7447 bytes
downloaded 7447 bytes
installing source package 'Rsymphony' ...
** package 'Rsymphony' successfully unpacked and MD5 sums checked
Warning: running command 'sh ./configure.win' had status 127
ERROR: configuration failed for package 'Rsymphony'
removing 'C:/Users/Olve/Documents/R/win-library/3.3/Rsymphony'
restoring previous 'C:/Users/Olve/Documents/R/win-library/3.3/Rsymphony'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Olve\Documents\R\win-library\3.3" C:\Users\Olve\AppData\Local\Temp\RtmpUjRTsG/downloaded_packages/Rsymphony_0.1-22.tar.gz' had status 1
Warning in install.packages :
installation of package ‘Rsymphony’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\Olve\AppData\Local\Temp\RtmpUjRTsG\downloaded_packages’
I use RStudio with R 3.3 and Windows 7 64bit, most of the other posts I have seen related to this is from OSX users getting slightly different error messages, and none of their solutions have helped me (downloading and installing symphony, not sure if i have done this correctly either)
Edit: Stedy's solution worked, thanks.
Since its a Windows 7 machine, you will want to use the zip file instead of the tar file:
> install.packages('Rsymphony')
Installing package into ‘C:/Users/zstednic/Documents/R/win-library/3.3’
(as ‘lib’ is unspecified)
Package which is only available in source form, and may need compilation of
C/C++/Fortran: ‘Rsymphony’
These will not be installed
> install.packages('Rsymphony_0.1-22.zip', repos=NULL)
Installing package into ‘C:/Users/zstednic/Documents/R/win-library/3.3’
(as ‘lib’ is unspecified)
package ‘Rsymphony’ successfully unpacked and MD5 sums checked
> library(Rsymphony)
>