ggplot2 add manual legend for two data series - r

Question

I have this dataframe:
Control Stress days sd_control sd_stress
X1 0.9702100 0.9343627 X1 0.001900535 0.07035645
X2 0.9666619 0.8595523 X2 0.014946893 0.04066567
X3 0.9165654 0.7160598 X3 0.072655343 0.07025344
X4 0.9208237 0.6668044 X4 0.050870831 0.08736982
X5 0.8766547 0.7660685 X5 0.073588197 0.04868614
X6 0.9599553 0.7937444 X6 0.041559836 0.05326769
X7 0.9736297 0.8188934 X7 0.003817743 0.06272428
and based on this data I've done this plot:
With the following code:
significance <- data.frame(days=c("X2","X3","X4","X6"),value=c(1.02,1.02,1.02,1.02))
ggplot(my_data, aes(x=days,y=Control,group=1)) +
geom_errorbar(aes(ymax = Control-sd_control, ymin = Control+sd_control),
width=0.2, size=0.5) +
geom_errorbar(aes(ymax = Stress-sd_stress, ymin = Stress+sd_stress),
width=0.2, size=0.5) +
geom_point(shape=23,color='gray45',fill='gray45',size=4) +
geom_line(color='gray45',size=1) +
geom_point(data=my_data,aes(x=days,y=Stress),size=4,shape=22,fill='gray',color='gray',
show.legend = TRUE) +
geom_line(data = my_data, aes(x=days,y=Stress),color='gray',size=1) +
geom_point(data=significance, aes(x=days,y=value),shape='*',size=6) +
labs(x='\nDAT',y='RWC\n') +
scale_y_continuous(labels = percent_format(accuracy = 1),limits = c(0.5,1.04),
expand = c(0,0), breaks = seq(from=0.5,to=1,by=0.05)) +
scale_x_discrete(expand = c(0.07, 0),labels = c(0,7,14,21,27,35,42)) +
ggtitle('Relative Water Content\n') +
theme(panel.border = element_rect(colour = "black", fill=NA, size=0.5),
panel.background = element_rect(fill = 'white'),
plot.title = element_text(hjust = 0.5,family = 'Calibri',face='bold'),
axis.title = element_text(family = 'Calibri',face = 'bold'),
axis.text = element_text(family = 'Calibri')
)
I want to add a legend in the bottom-right on the plot that describres the Control and Stress Treatmentes with the same shape of the points. I've tried several approaches that I've found here as set a color vector and scale_colour_manual attributes but none of them worked. Any suggestion?

Answer 1

The issue is that you use the color, fill and shape arguments.
To get a legend you have to map on aesthetics, i.e. inside aes().
After doing so ggplot will add lgends(s) automatically and you can apply scale_xxx_manual to get the desired colors, fill and shapes.
However, as this results in 3 legends (was not able to figure out why the merging of the legends failed) I use guides to keep only one of them and guide_legend to style the legend. Try this:
library(ggplot2)
library(scales)
ggplot(my_data, aes(x=days, group=1)) +
geom_errorbar(aes(ymax = Control-sd_control, ymin = Control+sd_control),
width=0.2, size=0.5) +
geom_errorbar(aes(ymax = Stress-sd_stress, ymin = Stress+sd_stress),
width=0.2, size=0.5) +
geom_point(aes(y=Control, color = "Control", fill = "Control", shape = "Control"), size=4) +
geom_line(aes(y=Control, color = "Control"),size=1) +
geom_point(aes(y=Stress, color = "Stress", fill = "Stress", shape = "Stress"), size=4) +
geom_line(aes(y=Stress, color = "Stress"), size=1) +
geom_point(data=significance, aes(y=value),shape='*',size=6) +
scale_color_manual(values = c("Control" = 'gray45', "Stress" = 'gray') ) +
scale_fill_manual(values = c("Control" = 'gray45', "Stress" = 'gray') ) +
scale_shape_manual(values = c("Control" = 23, "Stress" = 22)) +
guides(shape = FALSE, fill = FALSE,
color = guide_legend(override.aes = list(shape = c("Control" = 23, "Stress" = 22),
fill = c("Control" = 'gray45', "Stress" = 'gray')))) +
labs(x='\nDAT',y='RWC\n') +
scale_y_continuous(labels = percent_format(accuracy = 1),limits = c(0.5,1.04),
expand = c(0,0), breaks = seq(from=0.5,to=1,by=0.05)) +
scale_x_discrete(expand = c(0.07, 0), labels = c(0,7,14,21,27,35,42)) +
ggtitle('Relative Water Content\n') +
theme(panel.border = element_rect(colour = "black", fill=NA, size=0.5),
panel.background = element_rect(fill = 'white'),
plot.title = element_text(hjust = 0.5,family = 'Calibri',face='bold'),
axis.title = element_text(family = 'Calibri',face = 'bold'),
axis.text = element_text(family = 'Calibri')
)