I'm working with a SUSE SLE 12.4
> cat /etc/SuSE-release
SUSE Linux Enterprise Server 12 (x86_64)
VERSION = 12
PATCHLEVEL = 4
I'm trying to install the library curl for R [3.6], but I get this error:
* installing *source* package ‘curl’ ...
** package ‘curl’ successfully unpacked and MD5 sums checked
** using staged installation
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
Using PKG_CFLAGS=
Using PKG_LIBS=-lcurl
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because libcurl was not found. Try installing:
* deb: libcurl4-openssl-dev (Debian, Ubuntu, etc)
* rpm: libcurl-devel (Fedora, CentOS, RHEL)
* csw: libcurl_dev (Solaris)
If libcurl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘curl’
libcurl4 (version 7.60.0-2.11) is installed.
As suggested from the error message I tried to install the Linux Package libcurl-devel.
Unsurprisingly, since I'm dealing with a dev package, I get this message:
> sudo zypper install libcurl-devel
Loading repository data...
Reading installed packages...
'libcurl-devel' not found in package names. Trying capabilities.
No provider of 'libcurl-devel' found.
Resolving package dependencies...
Nothing to do.
I tried to find an online repo that could provide for that package. I found nothing.
Can anyone help me?
If you need more infos, I'll be happy to provide them.
As requested, here you have more infos.
> zypper se *curl*
Loading repository data...
Reading installed packages...
S | Name | Summary | Type
--+-----------------+----------------------------------------+-----------
i | curl | A Tool for Transferring Data from URLs | package
| curl | A Tool for Transferring Data from URLs | srcpackage
i | libcurl4 | Version 4 of cURL shared library | package
i | libcurl4-32bit | Version 4 of cURL shared library | package
| perl-WWW-Curl | Perl extension interface for libcurl | package
| perl-WWW-Curl | Perl extension interface for libcurl | srcpackage
i | python-pycurl | PycURL -- cURL library module | package
| python-pycurl | PycURL -- cURL library module | srcpackage
| python3-pycurl | PycURL -- cURL library module | package
| python3-pycurl | PycURL -- cURL library module | srcpackage
| qemu-block-curl | cURL block support for QEMU | package
> zypper se libcurl*
Loading repository data...
Reading installed packages...
S | Name | Summary | Type
--+----------------+----------------------------------+--------
i | libcurl4 | Version 4 of cURL shared library | package
i | libcurl4-32bit | Version 4 of cURL shared library | package
You can go here here, search for libcurl-devel for your SUSE version, download it and install it locally using provided instructions. I do see that libcurl-devel is available for your system.
UPDATE
In my understanding, the problem is that you don't have the SDK module activated in your system. If you don't have administrative privileges, ask the administrator to activate the SDK module by running:
SUSEConnect -p sle-sdk/12.4/x86_64
After this module is activated, run:
sudo zypper install libcurl-devel
Try updating your package database prior to installing:
sudo zypper ref
Related
Requirement: To install R Packages in Airflow to execute the RScript in Airflow
Tried: Below commands in DockerFile
# Global Docker Build arguments
ARG AIRFLOW_VERSION=2.3.3
ARG PYTHON_RUNTIME_VERSION=3.8
FROM apache/airflow:${AIRFLOW_VERSION}-python${PYTHON_RUNTIME_VERSION}
SHELL ["/bin/bash", "-o", "pipefail", "-e", "-u", "-x", "-c"]
USER 0
RUN apt-get update && apt-get install -y r-base r-base-core && \
rm -r /var/lib/apt/lists/*
RUN R -e "install.packages('httr', repos='https://cran.rstudio.com/')"
RUN R -e "install.packages('jsonlite', repos='http://cran.rstudio.com/')"
Error : Error in library(httr) : there is no package called ‘httr’
Also Tried another by including in the RScript as
install.packages("httr")
install.packages("jsonlite")
library(httr)
library(jsonlite)
Got error as
Running command: ['Rscript', '/opt/airflow/dags/r_scripts/R_script.R']
[2023-01-04, 16:57:58 UTC] {subprocess.py:85} INFO - Output:
[2023-01-04, 16:57:58 UTC] {subprocess.py:92} INFO - Installing package into ‘/usr/local/lib/R/site-library’
[2023-01-04, 16:57:58 UTC] {subprocess.py:92} INFO - (as ‘lib’ is unspecified)
[2023-01-04, 16:57:58 UTC] {subprocess.py:92} INFO - Warning in install.packages("httr") :
[2023-01-04, 16:57:58 UTC] {subprocess.py:92} INFO - 'lib = "/usr/local/lib/R/site-library"' is not writable
[2023-01-04, 16:57:58 UTC] {subprocess.py:92} INFO - Error in install.packages("httr") : unable to install packages
[2023-01-04, 16:57:58 UTC] {subprocess.py:92} INFO - Execution halted
[2023-01-04, 16:57:58 UTC] {subprocess.py:96} INFO - Command exited with return code 1
You are running into errors during compilation that are causing cascading errors. When in trouble building R images, since the docker build process often masks/hides some of the real error messages, I run a container before the installation phase to see what's going on. If we do that, we'll see errors such as:
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because libcurl was not found. Try installing:
* deb: libcurl4-openssl-dev (Debian, Ubuntu, etc)
* rpm: libcurl-devel (Fedora, CentOS, RHEL)
If libcurl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘curl’
* removing ‘/home/airflow/R/x86_64-pc-linux-gnu-library/4.0/curl’
* installing *source* package ‘openssl’ ...
** package ‘openssl’ successfully unpacked and MD5 sums checked
** using staged installation
Using PKG_CFLAGS=
--------------------------- [ANTICONF] --------------------------------
Configuration failed because openssl was not found. Try installing:
* deb: libssl-dev (Debian, Ubuntu, etc)
* rpm: openssl-devel (Fedora, CentOS, RHEL)
* csw: libssl_dev (Solaris)
* brew: openssl (Mac OSX)
If openssl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a openssl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
-------------------------- [ERROR MESSAGE] ---------------------------
tools/version.c:1:10: fatal error: openssl/opensslv.h: No such file or directory
1 | #include <openssl/opensslv.h>
| ^~~~~~~~~~~~~~~~~~~~
compilation terminated.
--------------------------------------------------------------------
ERROR: configuration failed for package ‘openssl’
* removing ‘/home/airflow/R/x86_64-pc-linux-gnu-library/4.0/openssl’
ERROR: dependencies ‘curl’, ‘openssl’ are not available for package ‘httr’
* removing ‘/home/airflow/R/x86_64-pc-linux-gnu-library/4.0/httr’
The downloaded source packages are in
‘/tmp/Rtmp9dyEo5/downloaded_packages’
When you see this, it should be clear: you have OS-level dependencies that are not met. While the CRAN page for httr is uninformative here, know that it relies on curl, which lists:
SystemRequirements: libcurl: libcurl-devel (rpm) or libcurl4-openssl-dev (deb).
If you dive a little deeper, you'll see that we need to add that package as well as libssl-dev.
I only tested against the initial few portions of your Dockerfile, but I was able to build this and confirm that R sees these two new packages. (I also took the liberty of installing both packages in one RUN line, thinking that fewer images in the build process was a good thing.)
ARG AIRFLOW_VERSION=2.3.3
ARG PYTHON_RUNTIME_VERSION=3.8
FROM apache/airflow:${AIRFLOW_VERSION}-python${PYTHON_RUNTIME_VERSION}
SHELL ["/bin/bash", "-o", "pipefail", "-e", "-u", "-x", "-c"]
USER 0
RUN apt-get update && apt-get install -y r-base r-base-core r-base-dev \
libcurl4-openssl-dev libssl-dev && \
rm -r /var/lib/apt/lists/*
RUN R -e "install.packages(c('httr', 'jsonlite'), repos='https://cran.rstudio.com/')"
The build:
$ docker build -t myimage .
[+] Building 20.5s (7/7) FINISHED
=> [internal] load build definition from Dockerfile 0.0s
=> => transferring dockerfile: 474B 0.0s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [internal] load metadata for docker.io/apache/airflow:2.3.3-python3.8 0.7s
=> [1/3] FROM docker.io/apache/airflow:2.3.3-python3.8#sha256:3a17e765ce209eb6cc551518f3b7ad5e2126d509ca8bdd35232ed2d35f801049 0.0s
=> CACHED [2/3] RUN apt-get update && apt-get install -y r-base r-base-core r-base-dev libcurl4-openssl-dev libssl-dev && rm -r /var/lib/apt/lists/* 0.0s
=> [3/3] RUN R -e "install.packages(c('httr', 'jsonlite'), repos='https://cran.rstudio.com/')" 19.6s
=> exporting to image 0.2s
=> => exporting layers 0.1s
=> => writing image sha256:6271d7deb41211a7fa603a086f8cc24d1249d831546e2fec0293d87d14558312 0.0s
=> => naming to docker.io/library/myimage
Confirm:
$ docker run -it --rm myimage bash
The container is run as root user. For security, consider using a regular user account.
root#10f43b1bd4c2:/opt/airflow# ls /usr/local/lib/R/site-library/
R6 askpass curl httr jsonlite mime openssl sys
root#10f43b1bd4c2:/opt/airflow# R
R version 4.0.4 (2021-02-15) -- "Lost Library Book"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> packageVersion("httr")
[1] ‘1.4.4’
> packageVersion("jsonlite")
[1] ‘1.8.4’
> q("no")
Renv, can't install devtools
Goal: install devtools with renv
Expected Results: Installation of devtools.
Actual Results: see error below
I try to install packages in RStudio through renv (On Ubuntu), to use for my own package. I performed Renv init(), packages will install except for devtools. When I try to install devtools through renv::install()I get the following error:
> renv::install("devtools")
Retrieving 'https://cran.rstudio.com/src/contrib/devtools_2.4.4.tar.gz' ...
OK [file is up to date]
Retrieving 'https://cran.rstudio.com/src/contrib/pkgdown_2.0.6.tar.gz' ...
OK [file is up to date]
Retrieving 'https://cran.rstudio.com/src/contrib/ragg_1.2.2.tar.gz' ...
OK [file is up to date]
Installing ragg [1.2.2] ...
FAILED
Error installing package 'ragg':
================================
* installing *source* package ‘ragg’ ...
** package ‘ragg’ successfully unpacked and MD5 sums checked
** using staged installation
Package libtiff-4 was not found in the pkg-config search path.
Perhaps you should add the directory containing `libtiff-4.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libtiff-4' found
Package libtiff-4 was not found in the pkg-config search path.
Perhaps you should add the directory containing `libtiff-4.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libtiff-4' found
Using PKG_CFLAGS=
Using PKG_LIBS=-lfreetype -lpng16 -ltiff -lz -ljpeg -lbz2
-----------------------------[ ANTICONF ]-------------------------------
Configuration failed to find one of freetype2 libpng libtiff-4. Try installing:
* deb: libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev (Debian, Ubuntu, etc)
* rpm: freetype-devel libpng-devel libtiff-devel libjpeg-turbo-devel (Fedora, CentOS, RHEL)
* csw: libfreetype_dev libpng16_dev libtiff_dev libjpeg_dev (Solaris)
If freetype2 libpng libtiff-4 is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a freetype2 libpng libtiff-4.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
-------------------------- [ERROR MESSAGE] ---------------------------
<stdin>:1:22: fatal error: ft2build.h: No such file or directory
compilation terminated.
--------------------------------------------------------------------
ERROR: configuration failed for package ‘ragg’
* removing ‘/home/SmitsG/Documents/Projects/{"package_location"}/renv/staging/1/ragg’
Error: install of package 'ragg' failed [error code 1]
So this resulted in the following errors:
No package 'libtiff-4' found
:1:22: fatal error: ft2build.h: No such file or directory
Error: install of package 'ragg' failed [error code 1]
I tried the following:
Installation in other package environment. This didn't work out
https://techoverflow.net/2019/06/11/how-to-fix-ft2build-h-no-such-file-or-directory/
Seems that I am missing the ft2build.h header file from
libfreetype. So I tried to install libfreetype from tar.gz and from
CRAN, for renv (this didn't install automatically). This didn't work out.
Package libtiff-4 was not found in the pkg-config search path.
Perhaps you should add the directory containing `libtiff-4.pc'
to the PKG_CONFIG_PATH environment variable
I found this link: https://github.com/numworks/epsilon/issues/592 where the set the PKG_CONFIG_PATH. But I think this can only be done when libfreetype is installed through renv.
{:~/path_to_package}$ pkg-config --cflags freetype2-I/usr/include/freetype2
-I/usr/include/libpng16
{:~/path_to_package}$ pkg-config --libs --cflags libtiff-4Package libtiff-4 was not found in the pkg-config search path.
Perhaps you should add the directory containing `libtiff-4.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libtiff-4' found
I am a newbie to linux and I have found that installing R packages can be very frustrating because (1) there are numerous linux dependencies that need to be installed first and (2) it takes forever. Below is a script that installs the dependencies that I have found in installing R on my system (Linux Mint 21 Vanessa).
sudo apt update
sudo apt install -q \
cargo \
cmake \
default-jdk \
fonts-roboto \
htop \
libcairo2-dev \
libclang-dev \
libcurl4-openssl-dev \
libfontconfig1-dev \
libfreetype6-dev \
libfribidi-dev \
libgdal-dev \
libgeos-dev \
libharfbuzz-dev \
libjpeg-dev \
libproj-dev \
libpng-dev \
libpq-dev \
libsodium-dev \
libssl-dev \
libtiff5-dev \
libudunits2-dev \
libx11-dev \
libxml2-dev \
openjdk-8-jdk \
openjdk-8-jre \
pandoc \
ttf-mscorefonts-installer \
xorg-dev
> install.packages("ragg")
trying URL 'https://cloud.r-project.org/src/contrib/ragg_1.1.3.tar.gz'
Content type 'application/x-gzip' length 420401 bytes (410 KB)
==================================================
downloaded 410 KB
Welcome at Tue Aug 17 23:24:09 2021
Library path: /home/roy/miniconda3/envs/r-4.1/lib/R/library
Repositories set.
R_MAX_NUM_DLLS set to 1000.
* installing *source* package ‘ragg’ ...
** package ‘ragg’ successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu
Using PKG_LIBS=-lfreetype -lpng16 -lm -lz -lm -lz -ltiff -lwebp -lzstd -llzma -ljbig -ljpeg -lz -lm
-----------------------------[ ANTICONF ]-------------------------------
Configuration failed to find one of freetype2 libpng libtiff-4. Try installing:
* deb: libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev (Debian, Ubuntu, etc)
* rpm: freetype-devel libpng-devel libtiff-devel libjpeg-turbo-devel (Fedora, CentOS, RHEL)
* csw: libfreetype_dev libpng16_dev libtiff_dev libjpeg_dev (Solaris)
If freetype2 libpng libtiff-4 is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a freetype2 libpng libtiff-4.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
-------------------------- [ERROR MESSAGE] ---------------------------
In file included from /home/roy/miniconda3/envs/r-4.1/x86_64-conda-linux-gnu/sysroot/usr/include/features.h:361,
from /home/roy/miniconda3/envs/r-4.1/x86_64-conda-linux-gnu/sysroot/usr/include/limits.h:27,
from /home/roy/miniconda3/envs/r-4.1/lib/gcc/x86_64-conda-linux-gnu/9.3.0/include-fixed/limits.h:194,
from /home/roy/miniconda3/envs/r-4.1/lib/gcc/x86_64-conda-linux-gnu/9.3.0/include-fixed/syslimits.h:7,
from /home/roy/miniconda3/envs/r-4.1/lib/gcc/x86_64-conda-linux-gnu/9.3.0/include-fixed/limits.h:34,
from /usr/include/libpng16/pngconf.h:31,
from /usr/include/libpng16/png.h:339,
from <stdin>:2:
/usr/include/x86_64-linux-gnu/sys/cdefs.h:492:49: error: missing binary operator before token "("
492 | #if __GNUC_PREREQ (4,8) || __glibc_clang_prereq (3,5)
| ^
In file included from /home/roy/miniconda3/envs/r-4.1/x86_64-conda-linux-gnu/sysroot/usr/include/stdio.h:932,
from /usr/include/libpng16/pngconf.h:46,
from /usr/include/libpng16/png.h:339,
from <stdin>:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:228:17: error: missing binary operator before token "("
228 | #if __GLIBC_USE (DEPRECATED_GETS)
| ^
--------------------------------------------------------------------
ERROR: configuration failed for package ‘ragg’
* removing ‘/home/roy/miniconda3/envs/r-4.1/lib/R/library/ragg’
The downloaded source packages are in
‘/tmp/RtmpL1ZZnL/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("ragg") :
installation of package ‘ragg’ had non-zero exit status
Session info
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.1.0 (2021-05-18)
#> os Ubuntu 20.04.2 LTS
#> system x86_64, linux-gnu
#> ui X11
#> language en_GB:en
#> collate en_GB.UTF-8
#> ctype en_GB.UTF-8
#> tz Europe/Stockholm
#> date 2021-08-17
This issue happens in a conda environment. The suggested linux libraries are installed (see below, run in the same conda env).
sudo apt-get install -y libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev
Reading package lists... Done
Building dependency tree
Reading state information... Done
libjpeg-dev is already the newest version (8c-2ubuntu8).
libpng-dev is already the newest version (1.6.37-2).
libfreetype6-dev is already the newest version (2.10.1-2ubuntu0.1).
libtiff5-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1).
0 to upgrade, 0 to newly install, 0 to remove and 26 not to upgrade.
ragg installation outside the conda env works fine. My guess is that when installing from the conda env, it doesn't find the path to something. Any tips?
It looks like something connected to this question answer. I encountered the same issue when was trying to install "ragg" package inside my conda env, and the suggested fix in the log (mentioned by #BlackBear answer) is not the real cause of the issue, the issue's cause is showed below in the log:
-------------------------- [ERROR MESSAGE] ---------------------------
In file included from /home/roy/miniconda3/envs/r-4.1/x86_64-conda-linux-gnu/sysroot/usr/include/features.h:361,
from /home/roy/miniconda3/envs/r-4.1/x86_64-conda-linux-gnu/sysroot/usr/include/limits.h:27,
from /home/roy/miniconda3/envs/r-4.1/lib/gcc/x86_64-conda-linux-gnu/9.3.0/include-fixed/limits.h:194,
from /home/roy/miniconda3/envs/r-4.1/lib/gcc/x86_64-conda-linux-gnu/9.3.0/include-fixed/syslimits.h:7,
from /home/roy/miniconda3/envs/r-4.1/lib/gcc/x86_64-conda-linux-gnu/9.3.0/include-fixed/limits.h:34,
from /usr/include/libpng16/pngconf.h:31,
from /usr/include/libpng16/png.h:339,
from <stdin>:2:
/usr/include/x86_64-linux-gnu/sys/cdefs.h:492:49: error: missing binary operator before token "("
492 | #if __GNUC_PREREQ (4,8) || __glibc_clang_prereq (3,5)
| ^
In file included from /home/roy/miniconda3/envs/r-4.1/x86_64-conda-linux-gnu/sysroot/usr/include/stdio.h:932,
from /usr/include/libpng16/pngconf.h:46,
from /usr/include/libpng16/png.h:339,
from <stdin>:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:228:17: error: missing binary operator before token "("
228 | #if __GLIBC_USE (DEPRECATED_GETS)
| ^
--------------------------------------------------------------------
And it is maybe somehow connected to macros definition confusing. I'm not a big specialist in glibc and other things, for me the suggestion from the #MrFlick in comments to the question to install package directly via conda worked (mamba install -c conda-forge r-ragg)
The solution is in the log:
Configuration failed to find one of freetype2 libpng libtiff-4. Try installing:
* deb: libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev (Debian, Ubuntu, etc)
* rpm: freetype-devel libpng-devel libtiff-devel libjpeg-turbo-devel (Fedora, CentOS, RHEL)
* csw: libfreetype_dev libpng16_dev libtiff_dev libjpeg_dev (Solaris)
Install those packages and try again.
I saw the same error. The fix is to install pkg-config to the conda environment:
conda install -c conda-forge pkg-config
Somehow it seems that R c compiler under conda environment can not call system pkg-config correctly.
I'm trying to install V8 rpackage on Ubuntu 18.04.1 LTS.
The version of R used is R 3.5.1.
I proceeded as follows:
I installed libv8 by typing : sudo apt-get install -y libv8-3.14-dev
I type this command to install in R : install.packages("V8")
Then, I received this error:
package ‘V8’ correctement décompressé et sommes MD5 vérifiées
Using PKG_CFLAGS=-I/usr/include/v8-3.14
Using PKG_LIBS=-lv8
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because was not found. Try installing:
deb: libv8-3.14-dev (formerly: libv8-dev) (Debian, Ubuntu)
rpm: v8-314-devel (formerly: v8-devel) (Fedora, EPEL)
brew: v8#3.15 (OSX) -- NOT regular v8! Tap from homebrew/versions
csw: libv8_dev (Solaris)
To use a custom libv8, set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
ERROR: configuration failed for package ‘V8’
removing ‘/opt/Anaconda/Anaconda3-5.1.0/envs/mro_env/lib/R/library/V8’
restoring previous ‘/opt/Anaconda/Anaconda3-5.1.0/envs/mro_env/lib/R/library/V8’
Warning message:
In install.packages("/home/ben/Bureau/miniCRAN/src/contrib/V8_1.5.tar.gz", :
l'installation du package ‘/home/ben/Bureau/miniCRAN/src/contrib/V8_1.5.tar.gz’ a eu un statut de sortie non nul
Then, I check if i have installed libv8 correctly by typing:
(mro_env) root#ben-Aspire-E5-575G:/opt/Anaconda/Anaconda3-5.1.0# find /lib* /usr/lib* -name 'libv8'
/usr/lib/libv8.so
/usr/lib/libv8.so.3.14.5
And
(mro_env) root#ben-Aspire-E5-575G:/opt/Anaconda/Anaconda3-5.1.0# ldconfig -p | grep libv8
libv8.so.3.14.5 (libc6,x86-64) => /usr/lib/libv8.so.3.14.5
libv8.so (libc6,x86-64) => /usr/lib/libv8.so
but when I verify if libv8.pc exists in /usr/lib/pkgconfig/ I didn't find it.
I'm stuck and I do not know how I can solve this problem.
Try this in R from Jeroem Ooms:
# For Linux: download libv8 during installation
Sys.setenv(DOWNLOAD_STATIC_LIBV8=1)
install.packages("V8")
I wanna install Atom editor on my laptop which is running openSUSE Leap 42.2, I use command zypper in to install the rpm package, but it prompts error info
Problem: nothing provides libXScrnSaver needed by atom-1.12.6-0.1.x86_64
flying#lempstacker:~> sudo zypper in ~/Downloads/atom-1.12.6-0.1.x86_64.rpm
Loading repository data...
Reading installed packages...
Resolving package dependencies...
Problem: nothing provides libXScrnSaver needed by atom-1.12.6-0.1.x86_64
Solution 1: do not install atom-1.12.6-0.1.x86_64
Solution 2: break atom-1.12.6-0.1.x86_64 by ignoring some of its dependencies
Choose from above solutions by number or cancel [1/2/c] (c):
The mirror official repositories I'm using were provided by aliyun, concrete configuration commands are
sudo zypper mr -da
sudo zypper rr `zypper repos | awk '{if(NR>2)print $5}'`
sudo zypper ar -fcg http://mirrors.aliyun.com/opensuse/distribution/leap/42.2/repo/oss/ 'Aliyun-Leap-42.2-OSS'
sudo zypper ar -fcg http://mirrors.aliyun.com/opensuse/distribution/leap/42.2/repo/non-oss/ 'Aliyun-Leap-42.2-Non-OSS'
sudo zypper ar -fcg http://mirrors.aliyun.com/opensuse/update/leap/42.2/oss/ 'Aliyun-Leap-42.2-Update-OSS'
sudo zypper ar -fcg http://mirrors.aliyun.com/opensuse/update/leap/42.2/non-oss/ 'Aliyun-Leap-42.2-Update-Non-OSS'
sudo zypper ref
exectue command zypper repos
flying#lempstacker:~> zypper repos
# | Alias | Name | Enabled | GPG Check | Refresh
--+---------------------------------+---------------------------------+---------+-----------+--------
1 | Aliyun-Leap-42.2-Non-OSS | Aliyun-Leap-42.2-Non-OSS | Yes | (r ) Yes | Yes
2 | Aliyun-Leap-42.2-OSS | Aliyun-Leap-42.2-OSS | Yes | (r ) Yes | Yes
3 | Aliyun-Leap-42.2-Update-Non-OSS | Aliyun-Leap-42.2-Update-Non-OSS | Yes | (r ) Yes | Yes
4 | Aliyun-Leap-42.2-Update-OSS | Aliyun-Leap-42.2-Update-OSS | Yes | (r ) Yes | Yes
flying#lempstacker:~>
I tried to search libXScrnSaver
via command zypper search
flying#lempstacker:~> zypper search libXScrnSaver
Loading repository data...
Reading installed packages...
S | Name | Summary | Type
--+---------------------------+--------------------------------------------------------------+--------
| libXScrnSaver-devel | Development files for the X11 Screen Saver extension library | package
| libXScrnSaver-devel-32bit | Development files for the X11 Screen Saver extension library | package
flying#lempstacker:~>
via command zypper info
flying#lempstacker:~> zypper info libXScrnSaver
Loading repository data...
Reading installed packages...
package 'libXScrnSaver' not found.
flying#lempstacker:~>
but it provided nothing except libXScrnSaver-devel which is not usefull even if I installed it.
I followed blog Install Slack on openSUSE Leap 42.1
it says just need to install libXss1, but it has been installed on my os.
flying#lempstacker:~> sudo zypper in libXss1
Loading repository data...
Reading installed packages...
'libXss1' is already installed.
No update candidate for 'libXss1-1.2.2-11.19.x86_64'. The highest available version is already installed.
Resolving package dependencies...
Nothing to do.
flying#lempstacker:~>
I really want to know how to solve the problem!
Who can help me?
I'm in the same boat. Have you tried the option of 'breaking atom' by ignoring the dependencies?
I tried using this opensuse software page but I had no luck:
https://software.opensuse.org/package/libXScrnSaver
When I try to list installed packages I get a develop version:
linux-2472:/home/Downloads # rpm -qa | grep -i libxscr
libXScrnSaver-devel-1.2.2-11.19.x86_64
When I try to Install libXScrnSaver (version 1.2.2-10) I get:
linux-2472:/home/Downloads # zypper in ./libXScrnSaver-
1.2.2-10.1.src.rpm
Loading repository data...
Reading installed packages...
'_tmpRPMcache_:libXScrnSaver=0:1.2.2-10.1' not found in package names. `Trying capabilities.`
No provider of '_tmpRPMcache_:libXScrnSaver=0:1.2.2-10.1' found.
Resolving package dependencies...
Nothing to do.
Note that there are two versions in my link: 1.2.2-10.1 and 1.2.2-23.1 No Luck yet. maybe its that tmprpmcache_ package. I'll try tomorrow, it's late.
I ran into the same problem today on my opensuse 42.2 leap.
But choosing solution 2 (to install by ignoring dependencies) worked just fine.
Although according to this link here:
https://github.com/atom/atom/issues/13354
The libXScrnSaver in not the one it actually wants, instead it requires libXss.so.1
Editing the spec file in the rpm was the solution suggested, although I have no idea how to do it.
This might help you :
https://github.com/atom/atom/pull/13386
It seems it'll be fixed in the upcoming release: https://github.com/atom/atom/pull/13386
I've just downloaded it and had the same problem. But I've installed it even breaking dependencies and it works without problems (be sure to have libXss installed):
sudo rpm -i --nodeps atom.x86_64.rpm