I am trying to install 'gplots' in R 3.4.4, however I keep getting the following error:
install.packages("gplots")
Installing package into ‘/home/u1983390/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
Warning: dependency ‘caTools’ is not available
trying URL 'https://cloud.r-project.org/src/contrib/gplots_3.0.3.tar.gz'
Content type 'application/x-gzip' length 516153 bytes (504 KB)
==================================================
downloaded 504 KB
ERROR: dependency ‘caTools’ is not available for package ‘gplots’
* removing ‘/home/u1983390/R/x86_64-pc-linux-gnu-library/3.4/gplots’
The downloaded source packages are in
‘/tmp/Rtmplw9pSu/downloaded_packages’
Warning message:
In install.packages("gplots") :
installation of package ‘gplots’ had non-zero exit status
> install.packages('caTools')
Installing package into ‘/home/u1983390/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
Warning message:
package ‘caTools’ is not available (for R version 3.4.4)
I believe this can be solved by installing a version of caTools compatible with R 3.4.4 following this method. However, I cannot find where older versions of caTools are (I have looked in the CRAN archive).
Would anybody be able to direct me to an earlier version, or does anyone know a different method for instaling gplots?
Cheers,
Jamie
Related
When installing this package in R 4.2.1
install.packages("MKmisc")
I have this output
Installing package into ‘C:/Users/blahblah/AppData/Local/R/win-library/4.2’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘limma’ is not available
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/MKmisc_1.8.zip'
Content type 'application/zip' length 769544 bytes (751 KB)
downloaded 751 KB
package ‘MKmisc’ successfully unpacked and MD5 sums checked
It does not work as we need to download the package limma so let's do it
install_github("cran/limma")
However it gives an error and the MKmisc package is still not working
What should I do to handle this problem?
"limma" can be installed using BiocManager.
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("limma")
install.packages("MKmisc")
# * DONE (MKmisc)
# The downloaded source packages are in
# ‘/tmp/Rtmphwh6rY/downloaded_packages’
I am using R 3.6.0 on CentOS 7.8.2003.
When I enter
install.packages("psych")
I get the following results
Installing package into ‘/usr/lib64/R/library’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Warning: dependency ‘mnormt’ is not available
trying URL 'https://mirrors.nics.utk.edu/cran/src/contrib/psych_1.9.12.31.tar.gz'
Content type 'application/x-gzip' length 1724122 bytes (1.6 MB)
==================================================
downloaded 1.6 MB
ERROR: dependency ‘mnormt’ is not available for package ‘psych’
* removing ‘/usr/lib64/R/library/psych’
The downloaded source packages are in
‘/tmp/RtmpF7bh0e/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("psych") :
installation of package ‘psych’ had non-zero exit status
When I try
install.packages("mnormt")
I get
(as ‘lib’ is unspecified)
Warning message:
package ‘mnormt’ is not available (for R version 3.6.0)
I tried the solutions given here and here but neither worked. Is it not possible to install the psych package on R 3.6.0?
After updating the R version from 3.5 to 4.0 I am facing installation issues with devtools package.
Having Rtools 4.0 and RStudio-1.2.5042 downloaded and installed.
when I try to install devtools
install.packages("devtools")
I get this message:
WARNING: Rtools is required to build R packages but is not currently
installed. Please download and install the appropriate version of
Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/ Installing package into
‘C:/Users/shalzsab/Documents/R/win-library/4.0’ (as ‘lib’ is
unspecified) also installing the dependency ‘usethis’
There is a binary version available but the source version is later:
binary source needs_compilation usethis 1.6.0 1.6.1 FALSE
trying URL
'https://cran.rstudio.com/bin/windows/contrib/4.0/devtools_2.3.0.zip'
Content type 'application/zip' length 351089 bytes (342 KB) downloaded
342 KB
package ‘devtools’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\shalzsab\AppData\Local\Temp\RtmpkhJwos\downloaded_packages
installing the source package ‘usethis’
trying URL 'https://cran.rstudio.com/src/contrib/usethis_1.6.1.tar.gz'
Content type 'application/x-gzip' length 255052 bytes (249 KB)
downloaded 249 KB
The downloaded source packages are in
‘C:\Users\shalzsab\AppData\Local\Temp\RtmpkhJwos\downloaded_packages’
And when I load the package I get this error
library(devtools)
Error: package ‘usethis’ required by ‘devtools’ could not be found
If I try to check the packages in the installation directory
find.package("devtools")
"C:/Users/shalzsab/Documents/R/win-library/4.0/devtools"
For usethis package I get this error
find.package("usethis")
Error in find.package("usethis") : there is no package called ‘usethis’
How can I solve this?
After install.packages("caret") getting below error:
Installing package into ‘...../R/win-library/3.4’
(as ‘lib’ is unspecified)
also installing the dependencies ‘rlang’, ‘recipes’
There are binary versions available but the source versions are later:
binary source needs_compilation
rlang 0.3.4 0.4.0 TRUE
recipes 0.1.5 0.1.6 FALSE
caret 6.0-81 6.0-84 TRUE
Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/rlang_0.3.4.zip'
Content type 'application/zip' length 1080437 bytes (1.0 MB)
downloaded 1.0 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/caret_6.0-81.zip'
Content type 'application/zip' length 5392174 bytes (5.1 MB)
downloaded 5.1 MB
package ‘rlang’ successfully unpacked and MD5 sums checked
Warning in install.packages :
cannot remove prior installation of package ‘rlang’
package ‘caret’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
.........\Temp\RtmpkJG4l1\downloaded_packages
installing the source package ‘recipes’
trying URL 'https://cran.rstudio.com/src/contrib/recipes_0.1.6.tar.gz'
Content type 'application/x-gzip' length 968331 bytes (945 KB)
downloaded 945 KB
ERROR: dependency 'rlang' is not available for package 'recipes'
* removing 'C:/Users/PBiradarP/Documents/R/win-library/3.4/recipes'
In R CMD INSTALL
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "......\R\win-library\3.4"
...../Temp\RtmpkJG4l1/downloaded_packages/recipes_0.1.6.tar.gz' had status 1
Warning in install.packages :
installation of package ‘recipes’ had non-zero exit status
I have tried and installed "rlang" package also. Its dependent on "recepies" package so again downloaded that too...
getting this message after installing this.
:Warning in install.packages :
package ‘recepies’ is not available (for R version 3.4.4)
I need to load caret package to be installed.
If you are using Windows, try this:
Add your library to libpaths; see this answer. After that try installing packages; see this answer:
install.packages("caret", dependencies=TRUE, type="win.binary")
I am getting some error while installing package tstools.
Several other packages were installed correctly like(xts, forecast, MAPA, openxslx),
but this one causing trouble.
R version: 3.5.0
RStudio version: 1.1.447
CRAN: Indonesia
OS: windows 10
Here is the error log...
> install.packages("tstools")
Installing package into ‘C:/Users/pc_name/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependency ‘data.table’
There is a binary version available but the source version is later:
binary source needs_compilation
tstools 0.3.6 0.3.6.1 FALSE
Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘data.table’
These will not be installed
installing the source package ‘tstools’
trying URL 'https://cran.rstudio.com/src/contrib/tstools_0.3.6.1.tar.gz'
Content type 'application/x-gzip' length 960748 bytes (938 KB)
downloaded 938 KB
ERROR: dependency 'data.table' is not available for package 'tstools'
* removing 'C:/Users/pc_name/Documents/R/win-library/3.5/tstools'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘tstools’ had non-zero exit status
The downloaded source packages are in ‘C:\Users\pc_name\AppData\Local\Temp\Rtmp6l4hr7\downloaded_packages’
Have you tried using devtools?
install.packages("devtools")
devtools::install_github("trnnick/TStools")
Sometimes bioconductor also does the trick
source("https://bioconductor.org/biocLite.R")
biocLite("tstools")
Have you tried install.packages("tstools", dependencies = T) ?