How to get User's Information in Rshiny - r
I want to get User's IP, User's window ID and User's Server Access time
I can get User's IP with below code but Other things can't get....
getting User's IP code is
ip <- session$request$REMOTE_ADDR at server.R
How to get User's window ID and User's Server Access time ????
Long-story-short, there is a limit to what "you" (the app and therefore you, the dev) can know about the connection. I've put in similar requests for some more with RStudio professional support, and what I have below is the current capability. I hope (with no advertised timeline) that more will eventually be available.
I have RStudio Connect, which is technically a different product but similar underlying methods and I believe a lot of shared code.
Here's a shiny app that helps you "discover" things from session. I filter out most of the environment-like variables in session that are either packed full of functions or just not something useful. It's possible I've filtered out too much, you might want to play with it to see if there is more.
library(shiny)
ui <- bootstrapPage(
h3("Parsed query string"),
verbatimTextOutput("queryText"),
h3("URL components"),
verbatimTextOutput("sessionText"),
h3("EnvVars"),
verbatimTextOutput("envvarText")
)
server <- function(input, output, session) {
# Parse the GET query string
output$queryText <- renderText({
query <- parseQueryString(session$clientData$url_search)
# Return a string with key-value pairs
paste(names(query), query, sep = "=", collapse=", ")
})
# Return the components of the URL in a string:
output$sessionText <- renderText({
cls <- sapply(session, function(a) class(a)[1])
nms <- names(cls[ cls %in% c("list", "character", "numeric", "integer",
"NULL", "logical", "environment", "reactivevalues" ) ])
nms <- setdiff(nms, ".__enclos_env__")
paste(
capture.output(
str(
sapply(nms,
function(sessnm) {
if (inherits(session[[sessnm]], c("environment", "reactivevalues"))) {
sapply(names(session[[sessnm]]), function(nm) session[[sessnm]][[nm]], simplify = FALSE)
} else if (inherits(session[[sessnm]], c("character", "numeric", "integer"))) {
session[[sessnm]]
} else class(session[[sessnm]])
}, simplify = FALSE),
nchar.max = 1e5,
vec.len = 1e5
)
),
collapse = "\n"
)
})
# Dump the environment variables
output$envvarText <- renderText({
paste(
capture.output(
str(as.list(Sys.getenv()))
),
collapse = "\n"
)
})
}
shinyApp(ui, server)
Here's some sample output, cleansed for private information. (Context for this output: I changed the server's IP address to be 111.222.333.444, otherwise that should be the external IP address. Also, this is behind an nginx reverse proxy for a few reasons, so REMOTE_ADDR (for instance) is not very exciting ... but it normally might be for you.)
List of 10
$ groups : chr [1:45] "Admins" "Analytics" "Synology Desktop"
$ user : chr "r2evans"
$ userData : Named list()
$ singletons : chr(0)
$ request :List of 24
..$ HTTP_UPGRADE : chr "websocket"
..$ HTTP_CONNECTION : chr "Upgrade"
..$ HTTP_GUID : chr "_6433vf0"
..$ QUERY_STRING : chr ""
..$ httpuv.version :Classes 'package_version', 'numeric_version' hidden list of 1
.. ..$ : int [1:3] 1 5 2
..$ SERVER_NAME : chr "127.0.0.1"
..$ SCRIPT_NAME : chr ""
..$ SERVER_PORT : chr "40386"
..$ REMOTE_PORT : chr "52858"
..$ HTTP_SEC_WEBSOCKET_VERSION : chr "13"
..$ rook.input :Classes 'NullInputStream', 'R6' <NullInputStream>
Public:
close: function ()
read: function (l = -1L)
read_lines: function (n = -1L)
rewind: function ()
..$ PATH_INFO : chr "/websocket/"
..$ rook.version : chr "1.1-0"
..$ rook.errors :Classes 'ErrorStream', 'R6' <ErrorStream>
Public:
cat: function (..., sep = " ", fill = FALSE, labels = NULL)
flush: function ()
..$ HTTP_X_FORWARDED_FOR : chr "111.222.333.444:61928, ::1"
..$ HTTP_SHINY_SERVER_CREDENTIALS: chr "{\"user\":\"r2evans\",\"groups\":[\"Admins\",\"Analytics\",\"Synology Desktop\"]}"
..$ HTTP_SEC_WEBSOCKET_KEY : chr "NbavAciNEKYiS1AN/NGlVQ=="
..$ HTTP_SHINY_SHARED_SECRET : chr "65567ccb5db3d2990df150611eb022f4"
..$ REMOTE_ADDR : chr "127.0.0.1"
..$ HEADERS : Named chr [1:10] "Upgrade" "_6433vf0" "127.0.0.1:40386" "NbavAciNEKYiS1AN/NGlVQ==" "13" "{\"user\":\"r2evans\",\"groups\":[\"Admins\",\"Analytics\",\"Synology Desktop\"]}" "65567ccb5db3d2990df150611eb022f4" "websocket" "Go-http-client/1.1" "111.222.333.444!:61928, ::1"
.. ..- attr(*, "names")= chr [1:10] "connection" "guid" "host" "sec-websocket-key" "sec-websocket-version" "shiny-server-credentials" "shiny-shared-secret" "upgrade" "user-agent" "x-forwarded-for"
..$ rook.url_scheme : chr "http"
..$ REQUEST_METHOD : chr "GET"
..$ HTTP_USER_AGENT : chr "Go-http-client/1.1"
..$ HTTP_HOST : chr "127.0.0.1:40386"
$ closed : chr "logical"
$ token : chr "3a358fb6a0d42c688ea8693b67d448cb"
$ clientData :List of 13
..$ output_queryText_hidden : logi FALSE
..$ output_sessionText_hidden: logi FALSE
..$ output_envvarText_hidden : logi FALSE
..$ url_search : chr ""
..$ url_hash_initial : chr ""
..$ singletons : chr ""
..$ url_protocol : chr "https:"
..$ allowDataUriScheme : logi TRUE
..$ url_port : chr ""
..$ url_hostname : chr "server.mydomain.com"
..$ pixelratio : int 2
..$ url_hash : chr ""
..$ url_pathname : chr "/content/23/"
$ input : Named list()
$ progressStack:List of 10
..$ .__enclos_env__:<environment: 0x652f8e8>
..$ clone :function (deep = FALSE)
..$ as_list :function ()
..$ size :function ()
..$ peek :function ()
..$ pop :function ()
..$ push :function (..., .list = NULL)
..$ initialize :function (init = 20L)
..$ private :<environment: 0x652fbc0>
..$ self :<environment: 0x652f8e8>
And the environment variables:
List of 42
$ EDITOR : chr "vi"
$ HOME : chr "/home"
$ LANG : chr "en_US.UTF-8"
$ LD_LIBRARY_PATH : chr "/usr/lib/R/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/default-java/jre/lib/amd64/server"
$ LN_S : chr "ln -s"
$ LOGNAME : chr "rstudio-connect"
$ MAKE : chr "make"
$ PAGER : chr "/usr/bin/pager"
$ PATH : chr "/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin:/opt/rstudio-connect/ext/pandoc2"
$ PWD : chr "/opt/rstudio-connect/mnt/app"
$ R_ARCH : chr ""
$ R_BROWSER : chr "xdg-open"
$ R_BZIPCMD : chr "/bin/bzip2"
$ R_CONFIG_ACTIVE : chr "rsconnect"
$ R_DOC_DIR : chr "/usr/share/R/doc"
$ R_GZIPCMD : chr "/bin/gzip -n"
$ R_HOME : chr "/usr/lib/R"
$ R_INCLUDE_DIR : chr "/usr/share/R/include"
$ R_LIBS : chr "/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/3.5.3:"
$ R_LIBS_SITE : chr "/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library"
$ R_LIBS_USER : chr "~/R/x86_64-pc-linux-gnu-library/3.5"
$ R_PAPERSIZE : chr "letter"
$ R_PAPERSIZE_USER : chr "letter"
$ R_PDFVIEWER : chr "/usr/bin/xdg-open"
$ R_PLATFORM : chr "x86_64-pc-linux-gnu"
$ R_PRINTCMD : chr "/usr/bin/lpr"
$ R_RD4PDF : chr "times,inconsolata,hyper"
$ R_SESSION_TMPDIR : chr "/opt/rstudio-connect/mnt/tmp/Rtmp3WkNTY"
$ R_SHARE_DIR : chr "/usr/share/R/share"
$ RSTUDIO_PANDOC : chr "/opt/rstudio-connect/ext/pandoc2"
$ R_SYSTEM_ABI : chr "linux,gcc,gxx,gfortran,?"
$ R_TEXI2DVICMD : chr "/usr/bin/texi2dvi"
$ R_UNZIPCMD : chr "/usr/bin/unzip"
$ R_ZIPCMD : chr "/usr/bin/zip"
$ SED : chr "/bin/sed"
$ SHINY_PORT : chr "40386"
$ SHINY_SERVER_VERSION: chr "1.8.2-10"
$ SHLVL : chr "0"
$ TAR : chr "/bin/tar"
$ TMPDIR : chr "/opt/rstudio-connect/mnt/tmp"
$ USER : chr "rstudio-connect"
$ USERNAME : chr "rstudio-connect"
Ultimately, publish this app, visit it, and see what you find one your instance.
Not requested, but included for completeness: here's an equivalent plumber API hit:
library(jsonlite)
library(plumber)
#* #get /clientdata
function(req, res){
classes <- sapply(req, function(a) head(class(a), n=1))
classes <- classes[! classes %in% c("ErrorStream", "NullInputStream") ]
classes <- classes[ ! names(classes) %in% c("args", "httpuv.version") ]
lapply(setNames(nm=names(classes)), function(nm) req[[nm]])
}
With output:
{
"SERVER_NAME": [
"127.0.0.1"
],
"HTTP_X_FORWARDED_FOR": [
"111.222.333.555:54590, 127.0.0.1"
],
"HTTP_ACCEPT": [
"application/json"
],
"HTTP_DNT": [
"1"
],
"SERVER_PORT": [
"33632"
],
"rook.url_scheme": [
"http"
],
"REQUEST_METHOD": [
"GET"
],
"HTTP_X_ARR_LOG_ID": [
"e5bdaca6-dcd7-4ca0-87d5-0d54927244b5"
],
"rook.version": [
"1.1-0"
],
"HTTP_X_ARR_SSL": [
"..., CN=*.mydomain.com"
],
"postBody": [],
"HTTP_RSTUDIO_CONNECT_CREDENTIALS": [
"{\"user\":\"r2evans\",\"groups\":[\"Admins\",\"Analytics\",\"Synology Desktop\"]}"
],
"HTTP_USER_AGENT": [
"Mozilla/5.0 (Windows NT 10.0; Win64; x64; rv:77.0) Gecko/20100101 Firefox/77.0"
],
"SCRIPT_NAME": [
""
],
"cookies": [],
"HTTP_ACCEPT_LANGUAGE": [
"en-US,en;q=0.5"
],
"HTTP_PLUMBER_SHARED_SECRET": [
"..."
],
"HTTP_REFERER": [
"https://server.mydomain.com/content/28/__swagger__/"
],
"REMOTE_PORT": [
"48684"
],
"HTTP_ACCEPT_ENCODING": [
"gzip, deflate, br"
],
"HTTP_MAX_FORWARDS": [
"10"
],
"HTTP_X_ORIGINAL_URL": [
"/content/28/clientdata"
],
"HTTP_HOST": [
"127.0.0.1:33632"
],
"HEADERS": [
"application/json",
"gzip, deflate, br",
"en-US,en;q=0.5",
"1",
"127.0.0.1:33632",
"10",
"...",
"https://server.mydomain.com/content/28/__swagger__/",
"https://server.mydomain.com/content/28",
"{\"user\":\"r2evans\",\"groups\":[\"Admins\",\"Analytics\",\"Synology Desktop\"]}",
"Mozilla/5.0 (Windows NT 10.0; Win64; x64; rv:77.0) Gecko/20100101 Firefox/77.0",
"e5bdaca6-dcd7-4ca0-87d5-0d54927244b5",
"..., CN=*.mydomain.com",
"111.222.333.555:54590, 127.0.0.1",
"/content/28/clientdata",
"https://server.mydomain.com:443/content/28/clientdata"
],
"HTTP_X_RSC_REQUEST": [
"https://server.mydomain.com:443/content/28/clientdata"
],
"HTTP_RSTUDIO_CONNECT_APP_BASE_URL": [
"https://server.mydomain.com/content/28"
],
"PATH_INFO": [
"/clientdata"
],
"QUERY_STRING": [
""
],
"REMOTE_ADDR": [
"127.0.0.1"
]
}
Related
Get user detail from rstudio connect published shiny app into app.R code [duplicate]
I want to get User's IP, User's window ID and User's Server Access time I can get User's IP with below code but Other things can't get.... getting User's IP code is ip <- session$request$REMOTE_ADDR at server.R How to get User's window ID and User's Server Access time ????
Long-story-short, there is a limit to what "you" (the app and therefore you, the dev) can know about the connection. I've put in similar requests for some more with RStudio professional support, and what I have below is the current capability. I hope (with no advertised timeline) that more will eventually be available. I have RStudio Connect, which is technically a different product but similar underlying methods and I believe a lot of shared code. Here's a shiny app that helps you "discover" things from session. I filter out most of the environment-like variables in session that are either packed full of functions or just not something useful. It's possible I've filtered out too much, you might want to play with it to see if there is more. library(shiny) ui <- bootstrapPage( h3("Parsed query string"), verbatimTextOutput("queryText"), h3("URL components"), verbatimTextOutput("sessionText"), h3("EnvVars"), verbatimTextOutput("envvarText") ) server <- function(input, output, session) { # Parse the GET query string output$queryText <- renderText({ query <- parseQueryString(session$clientData$url_search) # Return a string with key-value pairs paste(names(query), query, sep = "=", collapse=", ") }) # Return the components of the URL in a string: output$sessionText <- renderText({ cls <- sapply(session, function(a) class(a)[1]) nms <- names(cls[ cls %in% c("list", "character", "numeric", "integer", "NULL", "logical", "environment", "reactivevalues" ) ]) nms <- setdiff(nms, ".__enclos_env__") paste( capture.output( str( sapply(nms, function(sessnm) { if (inherits(session[[sessnm]], c("environment", "reactivevalues"))) { sapply(names(session[[sessnm]]), function(nm) session[[sessnm]][[nm]], simplify = FALSE) } else if (inherits(session[[sessnm]], c("character", "numeric", "integer"))) { session[[sessnm]] } else class(session[[sessnm]]) }, simplify = FALSE), nchar.max = 1e5, vec.len = 1e5 ) ), collapse = "\n" ) }) # Dump the environment variables output$envvarText <- renderText({ paste( capture.output( str(as.list(Sys.getenv())) ), collapse = "\n" ) }) } shinyApp(ui, server) Here's some sample output, cleansed for private information. (Context for this output: I changed the server's IP address to be 111.222.333.444, otherwise that should be the external IP address. Also, this is behind an nginx reverse proxy for a few reasons, so REMOTE_ADDR (for instance) is not very exciting ... but it normally might be for you.) List of 10 $ groups : chr [1:45] "Admins" "Analytics" "Synology Desktop" $ user : chr "r2evans" $ userData : Named list() $ singletons : chr(0) $ request :List of 24 ..$ HTTP_UPGRADE : chr "websocket" ..$ HTTP_CONNECTION : chr "Upgrade" ..$ HTTP_GUID : chr "_6433vf0" ..$ QUERY_STRING : chr "" ..$ httpuv.version :Classes 'package_version', 'numeric_version' hidden list of 1 .. ..$ : int [1:3] 1 5 2 ..$ SERVER_NAME : chr "127.0.0.1" ..$ SCRIPT_NAME : chr "" ..$ SERVER_PORT : chr "40386" ..$ REMOTE_PORT : chr "52858" ..$ HTTP_SEC_WEBSOCKET_VERSION : chr "13" ..$ rook.input :Classes 'NullInputStream', 'R6' <NullInputStream> Public: close: function () read: function (l = -1L) read_lines: function (n = -1L) rewind: function () ..$ PATH_INFO : chr "/websocket/" ..$ rook.version : chr "1.1-0" ..$ rook.errors :Classes 'ErrorStream', 'R6' <ErrorStream> Public: cat: function (..., sep = " ", fill = FALSE, labels = NULL) flush: function () ..$ HTTP_X_FORWARDED_FOR : chr "111.222.333.444:61928, ::1" ..$ HTTP_SHINY_SERVER_CREDENTIALS: chr "{\"user\":\"r2evans\",\"groups\":[\"Admins\",\"Analytics\",\"Synology Desktop\"]}" ..$ HTTP_SEC_WEBSOCKET_KEY : chr "NbavAciNEKYiS1AN/NGlVQ==" ..$ HTTP_SHINY_SHARED_SECRET : chr "65567ccb5db3d2990df150611eb022f4" ..$ REMOTE_ADDR : chr "127.0.0.1" ..$ HEADERS : Named chr [1:10] "Upgrade" "_6433vf0" "127.0.0.1:40386" "NbavAciNEKYiS1AN/NGlVQ==" "13" "{\"user\":\"r2evans\",\"groups\":[\"Admins\",\"Analytics\",\"Synology Desktop\"]}" "65567ccb5db3d2990df150611eb022f4" "websocket" "Go-http-client/1.1" "111.222.333.444!:61928, ::1" .. ..- attr(*, "names")= chr [1:10] "connection" "guid" "host" "sec-websocket-key" "sec-websocket-version" "shiny-server-credentials" "shiny-shared-secret" "upgrade" "user-agent" "x-forwarded-for" ..$ rook.url_scheme : chr "http" ..$ REQUEST_METHOD : chr "GET" ..$ HTTP_USER_AGENT : chr "Go-http-client/1.1" ..$ HTTP_HOST : chr "127.0.0.1:40386" $ closed : chr "logical" $ token : chr "3a358fb6a0d42c688ea8693b67d448cb" $ clientData :List of 13 ..$ output_queryText_hidden : logi FALSE ..$ output_sessionText_hidden: logi FALSE ..$ output_envvarText_hidden : logi FALSE ..$ url_search : chr "" ..$ url_hash_initial : chr "" ..$ singletons : chr "" ..$ url_protocol : chr "https:" ..$ allowDataUriScheme : logi TRUE ..$ url_port : chr "" ..$ url_hostname : chr "server.mydomain.com" ..$ pixelratio : int 2 ..$ url_hash : chr "" ..$ url_pathname : chr "/content/23/" $ input : Named list() $ progressStack:List of 10 ..$ .__enclos_env__:<environment: 0x652f8e8> ..$ clone :function (deep = FALSE) ..$ as_list :function () ..$ size :function () ..$ peek :function () ..$ pop :function () ..$ push :function (..., .list = NULL) ..$ initialize :function (init = 20L) ..$ private :<environment: 0x652fbc0> ..$ self :<environment: 0x652f8e8> And the environment variables: List of 42 $ EDITOR : chr "vi" $ HOME : chr "/home" $ LANG : chr "en_US.UTF-8" $ LD_LIBRARY_PATH : chr "/usr/lib/R/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/default-java/jre/lib/amd64/server" $ LN_S : chr "ln -s" $ LOGNAME : chr "rstudio-connect" $ MAKE : chr "make" $ PAGER : chr "/usr/bin/pager" $ PATH : chr "/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin:/opt/rstudio-connect/ext/pandoc2" $ PWD : chr "/opt/rstudio-connect/mnt/app" $ R_ARCH : chr "" $ R_BROWSER : chr "xdg-open" $ R_BZIPCMD : chr "/bin/bzip2" $ R_CONFIG_ACTIVE : chr "rsconnect" $ R_DOC_DIR : chr "/usr/share/R/doc" $ R_GZIPCMD : chr "/bin/gzip -n" $ R_HOME : chr "/usr/lib/R" $ R_INCLUDE_DIR : chr "/usr/share/R/include" $ R_LIBS : chr "/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/3.5.3:" $ R_LIBS_SITE : chr "/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library" $ R_LIBS_USER : chr "~/R/x86_64-pc-linux-gnu-library/3.5" $ R_PAPERSIZE : chr "letter" $ R_PAPERSIZE_USER : chr "letter" $ R_PDFVIEWER : chr "/usr/bin/xdg-open" $ R_PLATFORM : chr "x86_64-pc-linux-gnu" $ R_PRINTCMD : chr "/usr/bin/lpr" $ R_RD4PDF : chr "times,inconsolata,hyper" $ R_SESSION_TMPDIR : chr "/opt/rstudio-connect/mnt/tmp/Rtmp3WkNTY" $ R_SHARE_DIR : chr "/usr/share/R/share" $ RSTUDIO_PANDOC : chr "/opt/rstudio-connect/ext/pandoc2" $ R_SYSTEM_ABI : chr "linux,gcc,gxx,gfortran,?" $ R_TEXI2DVICMD : chr "/usr/bin/texi2dvi" $ R_UNZIPCMD : chr "/usr/bin/unzip" $ R_ZIPCMD : chr "/usr/bin/zip" $ SED : chr "/bin/sed" $ SHINY_PORT : chr "40386" $ SHINY_SERVER_VERSION: chr "1.8.2-10" $ SHLVL : chr "0" $ TAR : chr "/bin/tar" $ TMPDIR : chr "/opt/rstudio-connect/mnt/tmp" $ USER : chr "rstudio-connect" $ USERNAME : chr "rstudio-connect" Ultimately, publish this app, visit it, and see what you find one your instance. Not requested, but included for completeness: here's an equivalent plumber API hit: library(jsonlite) library(plumber) #* #get /clientdata function(req, res){ classes <- sapply(req, function(a) head(class(a), n=1)) classes <- classes[! classes %in% c("ErrorStream", "NullInputStream") ] classes <- classes[ ! names(classes) %in% c("args", "httpuv.version") ] lapply(setNames(nm=names(classes)), function(nm) req[[nm]]) } With output: { "SERVER_NAME": [ "127.0.0.1" ], "HTTP_X_FORWARDED_FOR": [ "111.222.333.555:54590, 127.0.0.1" ], "HTTP_ACCEPT": [ "application/json" ], "HTTP_DNT": [ "1" ], "SERVER_PORT": [ "33632" ], "rook.url_scheme": [ "http" ], "REQUEST_METHOD": [ "GET" ], "HTTP_X_ARR_LOG_ID": [ "e5bdaca6-dcd7-4ca0-87d5-0d54927244b5" ], "rook.version": [ "1.1-0" ], "HTTP_X_ARR_SSL": [ "..., CN=*.mydomain.com" ], "postBody": [], "HTTP_RSTUDIO_CONNECT_CREDENTIALS": [ "{\"user\":\"r2evans\",\"groups\":[\"Admins\",\"Analytics\",\"Synology Desktop\"]}" ], "HTTP_USER_AGENT": [ "Mozilla/5.0 (Windows NT 10.0; Win64; x64; rv:77.0) Gecko/20100101 Firefox/77.0" ], "SCRIPT_NAME": [ "" ], "cookies": [], "HTTP_ACCEPT_LANGUAGE": [ "en-US,en;q=0.5" ], "HTTP_PLUMBER_SHARED_SECRET": [ "..." ], "HTTP_REFERER": [ "https://server.mydomain.com/content/28/__swagger__/" ], "REMOTE_PORT": [ "48684" ], "HTTP_ACCEPT_ENCODING": [ "gzip, deflate, br" ], "HTTP_MAX_FORWARDS": [ "10" ], "HTTP_X_ORIGINAL_URL": [ "/content/28/clientdata" ], "HTTP_HOST": [ "127.0.0.1:33632" ], "HEADERS": [ "application/json", "gzip, deflate, br", "en-US,en;q=0.5", "1", "127.0.0.1:33632", "10", "...", "https://server.mydomain.com/content/28/__swagger__/", "https://server.mydomain.com/content/28", "{\"user\":\"r2evans\",\"groups\":[\"Admins\",\"Analytics\",\"Synology Desktop\"]}", "Mozilla/5.0 (Windows NT 10.0; Win64; x64; rv:77.0) Gecko/20100101 Firefox/77.0", "e5bdaca6-dcd7-4ca0-87d5-0d54927244b5", "..., CN=*.mydomain.com", "111.222.333.555:54590, 127.0.0.1", "/content/28/clientdata", "https://server.mydomain.com:443/content/28/clientdata" ], "HTTP_X_RSC_REQUEST": [ "https://server.mydomain.com:443/content/28/clientdata" ], "HTTP_RSTUDIO_CONNECT_APP_BASE_URL": [ "https://server.mydomain.com/content/28" ], "PATH_INFO": [ "/clientdata" ], "QUERY_STRING": [ "" ], "REMOTE_ADDR": [ "127.0.0.1" ] }
unable to create a cluster/plan to a remote server in R
Trying (still) to get a cluster running. I have two Linux (Ubuntu) computers, the server is "laptop". Pretty sure ssh works, with key authentication, I can ssh to "laptop" without a password from command line. ssh_exec_wait works, e.g., session <- ssh_connect("laptop") a <- ssh_exec_wait(session, command = "whoami") ssh_disconnect(session) works. I've gone through the doc (A future for R), works fine until I get to cluster futures. plan(cluster, workers = c("localhost")) works fine, but plan(cluster, workers = c("laptop")) gives the error: Warning: remote port forwarding failed for listen port 11968 List of 2 $ node_idx: int 1 $ node :List of 5 ..$ con : 'sockconn' int 3 .. ..- attr(*, "conn_id")=<externalptr> ..$ host : chr "laptop" .. ..- attr(*, "localhost")= logi FALSE ..$ rank : int 1 ..$ rshlogfile : NULL ..$ session_info:List of 6 .. ..$ r :List of 15 .. .. ..$ platform : chr "x86_64-pc-linux-gnu" .. .. ..$ arch : chr "x86_64" .. .. ..$ os : chr "linux-gnu" .. .. ..$ system : chr "x86_64, linux-gnu" .. .. ..$ status : chr "" .. .. ..$ major : chr "3" .. .. ..$ minor : chr "6.3" .. .. ..$ year : chr "2020" .. .. ..$ month : chr "02" .. .. ..$ day : chr "29" .. .. ..$ svn rev : chr "77875" .. .. ..$ language : chr "R" .. .. ..$ version.string: chr "R version 3.6.3 (2020-02-29)" .. .. ..$ nickname : chr "Holding the Windsock" .. .. ..$ os.type : chr "unix" .. ..$ system :List of 8 .. .. ..$ sysname : chr "Linux" .. .. ..$ release : chr "5.3.0-46-generic" .. .. ..$ version : chr "#38~18.04.1-Ubuntu SMP Tue Mar 31 04:17:56 UTC 2020" .. .. ..$ nodename : chr "laptop" .. .. ..$ machine : chr "x86_64" .. .. ..$ login : chr "mark" .. .. ..$ user : chr "mark" .. .. ..$ effective_user: chr "mark" .. ..$ libs : chr [1:4] "/home/mark/R/x86_64-pc-linux-gnu-library/3.6" "/usr/local/lib/R/site-library" "/usr/lib/R/site-library" "/usr/lib/R/library" .. ..$ pkgs : NULL .. ..$ pwd : chr "/home/mark" .. ..$ process:List of 1 .. .. ..$ pid: int 2809 ..- attr(*, "class")= chr "SOCKnode" Error: Initialization of plan() failed, because the test future used for validation failed. The reason was: Unexpected result (of class ‘NULL’ != ‘FutureResult’) retrieved for ClusterFuture future (label = ‘future-plan-test’, expression = ‘NA’): . This suggests that the communication with ClusterFuture worker (‘SOCKnode’ #1) is out of sync. I assume the first line is the real error message: Warning: remote port forwarding failed for listen port 11968 Do I need to manually set the port?
In my experience, the warning Warning: remote port forwarding failed for listen port 11968 is caused by a hanging R process on that port (it could be another process of course but it's likely that the future package created it). If you kill the process on laptop, the port should become available again. You can check by manually running ssh -R 11968:localhost:11968 laptop
First argument is not an open RODBC channel
I am connecting to an Oracle database via DNS (set up the connection on the tnsnames.ora with the name "database"). I am able to succesfully run the following code: con <- DBI::dbConnect(odbc::odbc(), "database", UID = "user", PWD = "password", trusted_connection = TRUE) I am also able to succesfully list all the tables in the database via: list <- dbListTables(con) View(list) However, when I run: results <- sqlQuery(channel = con, query = "select * from myschemaname.table") I get the error: Error in sqlQuery(channel = con, query = "select * from myschemaname.table") : first argument is not an open RODBC channel I have owner privileges and I am also able to update Excel Spreadsheets connected to this database via ODBC. If it's of any use, here's the output of str(con) str(con) Formal class 'Oracle' [package ".GlobalEnv"] with 4 slots ..# ptr :<externalptr> ..# quote : chr "\"" ..# info :List of 13 .. ..$ dbname : chr "" .. ..$ dbms.name : chr "Oracle" .. ..$ db.version : chr "11.02.0040" .. ..$ username : chr "user" .. ..$ host : chr "" .. ..$ port : chr "" .. ..$ sourcename : chr "database" .. ..$ servername : chr "database" .. ..$ drivername : chr "SQORA32.DLL" .. ..$ odbc.version : chr "03.80.0000" .. ..$ driver.version : chr "11.02.0001" .. ..$ odbcdriver.version : chr "03.52" .. ..$ supports.transactions: logi TRUE .. ..- attr(*, "class")= chr [1:3] "Oracle" "driver_info" "list" ..# encoding: chr ""
You are using RODBC::sqlQuery() for a connection created with DBI::dbConnect(). Either use DBI::dbGetQuery() with DBI::dbConnect() or create a connection with RODBC::odbcConnect(), and use RODBC::sqlQuery().
Another context, but the same error: If the table of your DB consists of numerics, you first of all have to load an object (nameofyourtable) of class xts: >library(RODBC) >library(DMwR) >library(xts) >data(nameofyourtable)
So I had something like this connecting to a SQL Server database. In the end I had to change the Trusted_Connection=TRUE to Trusted_Connection=Yes...
Error in parse_aws_s3_response, Forbidden (http 403)
I a I'm trying to use aws.s3 library to load data into S3. Below is my code below: Sys.setenv("AWS_ACCESS_KEY_ID" = ".............", "AWS_SECRET_ACCESS_KEY" = "...............", "AWS_DEFAULT_REGION" = "......") view bucket: get_bucket(bucket = "....", check_region = FALSE, verbose = TRUE) The code above works and contents of the bucket is returned. save object to s3: s3save(data, object = ".....", bucket = ".....") Error return: List of 4 $ Code : chr "AccessDenied" $ Message : chr "Access Denied" $ RequestId: chr "" $ HostId : chr "" - attr(*, "headers")=List of 6 ..$ x-amz-request-id : chr "" ..$ x-amz-id-2 : chr "" ..$ content-type : chr "application/xml" ..$ transfer-encoding: chr "chunked" ..$ date : chr "Tue, 05 Sep 2017 13:23:42 GMT" ..$ server : chr "AmazonS3" ..- attr(*, "class")= chr [1:2] "insensitive" "list" - attr(*, "class")= chr "aws_error" - attr(*, "request_canonical")= chr "GET\n/"| __truncated__ - attr(*, "request_string_to_sign")= car ""| __truncated__ - attr(*, "request_signature")= chr "AWS4-HMAC-SHA256 Credential=| __truncated__ NULL Error in parse_aws_s3_response(r, Sig, verbose = verbose) : Forbidden (HTTP 403). Any solution to this problem.
It seems like your IAM account is not authorized to do that operation. If you're the owner of the AWS account, you can go to AWS Service IAM, click on users, choose this IAM user and add the necessary authorizations to it.
I got the same error message when attempting get_bucket("collidr-api") All I needed to do was add the region name like so get_bucket("collidr-api", region="asia-south-01") Then it worked. I found that info here.
#audiracmichelle, #Prakhar, use the function put_object from aws.s3 library as shown below. The object input argument to function put_object is the name(string) the object should have in s3. You can first write a serialized object (in this case data) from memory with: in_mem_obj <- rawConnection(raw(0), "w") utils::write.table(data, in_mem_obj, sep = "\t", na = "", quote = TRUE, row.names = FALSE, fileEncoding="UTF-8") Then save object to S3 bucket: put_object(rawConnectionValue(in_mem_obj), object = FILEPATH/FILENAME, bucket = BUCKET, headers = c('x-amz-server-side-encryption' = 'AES256'), key = AWS_ACCESS_KEY_ID, secret = AWS_SECRET_ACCESS_KEY, region = AWS_REGION, check_region = FALSE)
How to reference .. .. elements in list in R?
How do you access list elements prefaced with double dots .. ..? I am trying to isolate the $attr part of the html to help in another question into a variable, and then place it another mime variable. x$parts$attr gives me NULL. Thanks for your help. EXAMPLE library(gmailr) test_email <- mime() x <- html_body(mime = test_email, body = "I wish I had a nice body") str(x) List of 5 $ parts :List of 2 ..$ : NULL ..$ :List of 4 .. ..$ parts : list() .. ..$ header:List of 2 .. .. ..$ MIME-Version: chr "1.0" .. .. ..$ Date : chr "Sun, 24 May 2015 09:44:59 GMT" .. ..$ body : chr "I wish I had a nice body" .. ..$ attr :List of 3 # << HOW do I get this? .. .. ..$ content_type: chr "text/html" .. .. ..$ charset : chr "utf-8" .. .. ..$ encoding : chr "base64" .. ..- attr(*, "class")= chr "mime"
Try this: str(x$parts[[2]]$attr) List of 3 $ content_type: chr "text/html" $ charset : chr "utf-8" $ encoding : chr "base64"