I'm trying to implement a Conditional GAN in NiftyNet.
I have a collection of 3D images in Nifti format, each of a specific class. The class should be the conditioning input for the GAN.
So far I have managed to make it work, but it's kind of a hack: I create a 1x1x1 dummy image corresponding to each 3D image, which contains the class as its single value. Then, in my config file (... stand for omissions):
[images]
csv_file = index.csv ; This contains the subject_id to path correspondence
...
[labels]
csv_file = labels.csv ; This contains the subject_id to path to the dummy image correspondence
interp_order = 0
spatial_window_size = (1)
...
[SYSTEM]
...
dataset_split_file = fold0.csv
...
[GAN]
image=images
conditioning=labels
...
Although it technically works, it's very flimsy. I would like to specify the class with a CSV file with columns subject_id and target.
I've tried the following, using the undocumented csv_data_file parameter in the input description:
[images]
csv_file = index.csv ; This contains the subject_id to path correspondence
...
[labels]
csv_data_file = ./modality_labels.csv
to_ohe = False
...
[SYSTEM]
...
dataset_split_file = fold0.csv
...
[GAN]
image=images
conditioning=labels
...
but I get the following error:
CRITICAL:niftynet: Reader required input section name [labels], but in the filename list the column is empty.
CRITICAL:niftynet: file_list parameter should be a pandas.DataFrame instance and has input section name [labels] as a column name.
CRITICAL:niftynet: Reader requires section(s): ['images', 'labels']
CRITICAL:niftynet: Configuration input sections are: ['subject_id', 'images']
What would be the correct way to specify it?
Related
I'm new to Powershell and I'm putting together a script that will populate all variables from data stored in a Excel file. Basically to create numerous VMs.
This works fine apart from where i have a variable with multiple name/value pairs which powershell needs to be a hashtable.
As each VM will need multiple tags applying, i have a column in excel called Tags.
The data in the field would look something like: "Top = Red `n Bottom = Blue".
I'm struggling to use ConvertFrom-StringData to create the hashtable however for these tags.
If i run:
ConvertFrom-StringData $exceldata.Tags
I end up with something like:
Name Value
---- -----
Top Red `n bottom = blue
I need help please with formatting the excel field correctly so ConvertFrom-StringData properly creates the hashtable. Or a better way of achieving this.
Thanks.
Sorted it, formatted the excel field as: Dept=it;env=prod;owner=Me
Then ran the following commands. No ConvertFrom-StringData required.
$artifacts = Import-Excel -Path "C:\temp\Artifacts.xlsx" -WorkSheetname "VM"
foreach ($artifact in $artifacts) {
$inputkeyvalues = $artifact.Tags
# Create hashtable
$tags = #{}
# Split input string into pairs
$inputkeyvalues.Split(';') |ForEach-Object {
# Split each pair into key and value
$key,$value = $_.Split('=')
# Populate $tags
$tags[$key] = $value
}
}
I have the following ALV report generated from the RFKSLD00 program:
I need to generate a report based on the above report like this one (as part of my work):
Any ideas how to do this? I am not asking for a solution but some steps on how to achieve this.
Each line of the original report is one line of your report, you need just to adjust the sums for local currency, i.e. multiply all values by local currency rate. The yellow totals lines shouldn't confuse you, they are generated by grid, not by report.
The only thing that is missing in original report is debit and credit of balance carryforward, I suppose in the original you have already reconciliated value. To get separate values for it you need inspecting the code.
The initial step would be to declare final structure and table based on it:
TYPES: BEGIN OF ty_report,
rec_acc TYPE skont,
vendor TYPE lifnr,
...
jan_deb TYPE wrbtr,
jan_cred TYPE wrbtr,
febr_deb TYPE wrbtr,
febr_cred TYPE wrbtr,
...
acc_bal_deb TYPE wrbtr,
acc_bal_cred TYPE wrbtr,
END OF ty_report,
tt_report TYPE TABLE OF ty_report.
DATA: lt_report TYPE tt_report.
Then you only need looping original report internal table and fill your final structure, not missing currency conversion:
select single * from tcurr
into #DATA(tcurr)
where fcurr = 'EUR'
and tcurr = 'AUD'. "<- your local currency
DATA(lv_ukurs) = tcurr-ukurs.
LOOP AT orig_table INTO DATA(orig_line).
APPEND INITIAL LINE INTO lt_report ASSIGNING FIELD-SYMBOL(<fs_rep>).
MOVE-CORRESPONDING orig_line TO <fs_rep>.
CASE orig_line-monat. "<- your period
WHEN '01'.
<fs_rep>-jan_deb = orig_line-debit.
<fs_rep>-jan_cred = orig_line-credit.
WHEN '02'.
<fs_rep>-febr_deb = orig_line-debit.
<fs_rep>-febr_cred = orig_line-credit.
...
ENDCASE.
DO 30 TIMES.
ASSIGN COMPONENT sy-index OF STRUCTURE <fs_rep> TO FIELD-SYMBOL(<field>).
CHECK sy-subrc = 0.
DESCRIBE FIELD <field> TYPE DATA(TYP).
CHECK TYP = 'P'.
CALL FUNCTION 'CONVERT_TO_LOCAL_CURRENCY'
EXPORTING
DATE = sy-datum
FOREIGN_CURRENCY = 'EUR'
LOCAL_CURRENCY = 'AUD'
FOREIGN_AMOUNT = <field>
TYPE_OF_RATE = 'M'
IMPORTING
EXCHANGE_RATE = lv_ukurs
LOCAL_AMOUNT = <field>.
ENDDO.
ENDLOOP.
I recommend to name all components of your final structure ty_report the same as in original as much as possible. Thus you can maximally utilize MOVE-CORRESPONDING and avoid manual coding.
This is just quick shot and I may be missing some details and errors.
Using the built-in "Import Data..." functionality we can import a properly formatted text file (like CSV and/or tab-delimited) as an image. It is rather straight forward to write a script to do so. However, my scripting approach is not efficient - which requires me to loop through each raw (use the "StreamReadTextLine" function) so it takes a while to get a 512x512 image imported.
Is there a better way or an "undocumented" script function that I can tap in?
DigitalMicrograph offers an import functionality via the File/Import Data... menu entry, which will give you this dialog:
The functionality evoked by this dialog can also be accessed by script commands, with the command
BasicImage ImageImportTextData( String img_name, ScriptObject stream, Number data_type_enum, ScriptObject img_size, Boolean lines_are_rows, Boolean size_by_counting )
As with the dialog, one has to pre-specify a few things.
The data type of the image.
This is a number. You can find out which number belongs to which image data type by, f.e., creating an image outputting its data type:
image img := Realimage( "", 4, 100 )
Result("\n" + img.ImageGetDataType() )
The file stream object
This object describes where the data is stored. The F1 help-documention explains how one creates a file-stream from an existing file, but essentially you need to specify a path to the file, then open the file for reading (which gives you a handle), and then using the fileHandle to create the stream object.
string path = "C:\\test.txt"
number fRef = OpenFileForReading( path )
object fStream = NewStreamFromFileReference( fRef, 1 )
The image size object
This is a specific script object you need to allocate. It wraps image size information. In case of auto-detecting the size from the text, you don't need to specify the actual size, but you still need the object.
object imgSizeObj = Alloc("ImageData_ImageDataSize")
imgSizeObj.SetNumDimensions(2) // Not needed for counting!
imgSizeObj.SetDimensionSize(0,10) // Not used for counting
imgSizeObj.SetDimensionSize(1,10) // Not used for counting
Boolean checks
Like with the checkboxes in the UI, you spefic two conditions:
Lines are Rows
Get Size By Counting
Note, that the "counting" flag is only used if "Lines are Rows" is also true. Same as with the dialog.
The following script improrts a text file with couting:
image ImportTextByCounting( string path, number DataType )
{
number fRef = OpenFileForReading( path )
object fStream = NewStreamFromFileReference( fRef, 1 )
number bLinesAreRows = 1
number bSizeByCount = 1
bSizeByCount *= bLinesAreRows // Only valid together!
object imgSizeObj = Alloc("ImageData_ImageDataSize")
image img := ImageImportTextData( "Imag Name ", fStream, DataType, imgSizeObj, bLinesAreRows, bSizeByCount )
return img
}
string path = "C:\\test.txt"
number kREAL4_DATA = 2
image img := ImportTextByCounting( path, kREAL4_DATA )
img.ShowImage()
I have a data frame and a text variable containing the name of this data frame:
adsl = data.frame(a=2, b=7, w=17)
ds_name = "adsl"
I want to save my data frame from the workspace to the file named "dest_file". The code should be wrapped into a function get_r()
with the data frame name as an argument:
get_r(ds_name="adsl")
So I need to avoid using the explicit name "adsl" inside the code.
The following works almost correctly but the resulting data frame is called "temp_dataset", not "adsl":
get_r = function(ds_name){
temp_dataset = eval(parse(text=ds_name))
save(temp_dataset, file = "dest_file")
}
Here is another option which works wrong (the text string is being saved, not the data frame):
get_r = function(ds_name){
save(ds_name, file = "dest_file")
}
What should I do to make R just execute
save(adsl, file="dest_file")
inside the function? Thank you for any help.
Try
save(list = ds_name, file = "dest_file")
The list argument in save() allows you to pass the name of the data as a character string. See help(save) for more.
I have a vector data (an array variable for example float32 mydata[5];). for transmitting a single primitve/basic data in a bus its pretty simple.
inside_data=Simulink.BusElement;
inside_data.Name='somename';
inside_data.SampleTime = -1;
inside_data.datatype='single';
this element can be put inside a using
Bus=Simulink.Bus;
Bus.Elements=inside_data;
But this works when the input is a primitive. But what if my data is a vector. like float32 a[5]; then how can i send this data element in a bus.
UPDATE
So I tried to use a constant block named a with datatype single in which the input part i changed it as [1 2 3] which is a vector input.
another element is b with uint8 datatype.
i used the s-function builder just to check the working of this model. i already set everything (bus_mode on , datatype to be bus type etc). in the output part i used something like:
y0[0]=u0->a[0];
y0[1]=u0->a[1];
y0[2]=u0->a[2];
y1[0]=u0->b;
But it throws error as
c:\program files (x86)\matlab_v7111_r10bsp1\extern\include\matrix.h(313) : error C2061: syntax error : identifier 'mxLogical'
c:\program files (x86)\matlab_v7111_r10bsp1\extern\include\matrix.h(313) : error C2059: syntax error : ';'
my final aim is to use it for s_function
so if i declare a variable in s_func as
real32_T *a_output[5]=(real32_T *)ssGetOutputPortRealSignal(S,0);
and then i have a strcuture(because am transmitting data with a bus so the bus header file has this structure) and how do i declare and assign the input to the output.
a_output[0]=my_struct->a_input[0];
a_output[1]=my_struct->a_input[1];
a_output[2]=my_struct->a_input[2];
a_output[3]=my_struct->a_input[3];
a_output[4]=my_struct->a_input[4];
but the problem is with the declaration. it gives me error cannot convert from real32_T to real32_T * .
The main idea is to create Bus of type you need.
I did it this way:
num = zeros(15,15,15);
move = zeros(15,15,15);
a = struct('number',num,'movement', move);
busInfo = Simulink.Bus.createObject(a);
You can see it's possible to create any data structure, array, vector anything you want and then create Bus Signal of the same type.
I use this in callbacks/preLoadFcn (Model Explorer) to define this type in workspace, it creates slBus1 variable (its Bus Signal of my type), so I need to define output (or input if necessary) of any block like slBus1 only. And then use Bus Selector to work array data.
Can it helps to you?
ADD NEW INFORMATION
It depends of what you want.
For example: I create s-function for feedback system. It use my structure like this:
function a = fcn(BusSignal)
%#codegen
num = zeros(15,15,15);
move = zeros(15,15,15);
%...some math actions with num and move...
a = struct('number',num,'movement', move);
%...and some action with a structure... for example:
if (c>b)
a.number(1,2,3) = 15;
a.movement(1,2,3) = 42;
else
a = BusSignal;
end
Look at this - I use Bus signal at entrance and at exit and use Bus Selector to work it's data with.
REMEMBER to define input and output data as Bus Signals!