I am creating a plot using the ggplot() function in R Studio. For doing the job, I need to install the "tidyverse" package, but find installation failure. I will appreciate if you could solve the problem. The error messages are displayed in the console pane:
install.packages("tidyverse")
Installing package into ‘C:/Users/cheol/OneDrive/문서/R/win-library/3.6’
(as ‘lib’ is unspecified)
also installing the dependency ‘purrr’
trying URL 'https://cran.cnr.berkeley.edu/bin/windows/contrib/3.6/purrr_0.3.3.zip'
Content type 'application/zip' length 426130 bytes (416 KB)
downloaded 416 KB
trying URL 'https://cran.cnr.berkeley.edu/bin/windows/contrib/3.6/tidyverse_1.3.0.zip'
Content type 'application/zip' length 440226 bytes (429 KB)
downloaded 429 KB
package ‘purrr’ successfully unpacked and MD5 sums checked
Error in install.packages : ERROR: failed to lock directory ‘C:\Users\cheol\OneDrive\문서\R\win-library\3.6’ for modifying
Try removing ‘C:\Users\cheol\OneDrive\문서\R\win-library\3.6/00LOCK’
Related
I just updated R to version 4.0.2 and updated RStudio Desktop to version 1.3.959. As seen in the code below, I am unable to load tidyverse after what appears to be a successful installation. However, data.table installs and loads perfectly fine. Does anyone have experience with this? Thanks!
Code from console (tidyverse error):
> install.packages('tidyverse')
Installing package into ‘C:/Users/iangm/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
also installing the dependencies ‘RColorBrewer’, ‘scales’, ‘dplyr’, ‘ggplot2’
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/RColorBrewer_1.1-2.zip'
Content type 'application/zip' length 55583 bytes (54 KB)
downloaded 54 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/scales_1.1.1.zip'
Content type 'application/zip' length 560984 bytes (547 KB)
downloaded 547 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/dplyr_1.0.0.zip'
Content type 'application/zip' length 1302777 bytes (1.2 MB)
downloaded 1.2 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/ggplot2_3.3.2.zip'
Content type 'application/zip' length 4068169 bytes (3.9 MB)
downloaded 3.9 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/tidyverse_1.3.0.zip'
Content type 'application/zip' length 440050 bytes (429 KB)
downloaded 429 KB
package ‘RColorBrewer’ successfully unpacked and MD5 sums checked
package ‘scales’ successfully unpacked and MD5 sums checked
package ‘dplyr’ successfully unpacked and MD5 sums checked
package ‘ggplot2’ successfully unpacked and MD5 sums checked
package ‘tidyverse’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\iangm\AppData\Local\Temp\RtmpkNazQW\downloaded_packages
> library(tidyverse)
Error: package or namespace load failed for ‘tidyverse’:
.onLoad failed in loadNamespace() for 'broom', details:
call: loadNamespace(name)
error: there is no package called ‘backports’
Code from console (data.table success):
> install.packages('data.table')
Installing package into ‘C:/Users/iangm/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/data.table_1.12.8.zip'
Content type 'application/zip' length 2325868 bytes (2.2 MB)
downloaded 2.2 MB
package ‘data.table’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\iangm\AppData\Local\Temp\RtmpkNazQW\downloaded_packages
> library(data.table)
data.table 1.12.8 using 2 threads (see ?getDTthreads). Latest news: r-datatable.com
There can be some problem with package backports: try to reinstall that package and load tidyverse again:
install.packages("backports")
library(tidyverse)
If that doesn't work, there might be problem with packages built under an earlier major version of R (i.e. 3.x). Try reinstalling all the packages with:
update.packages(ask = FALSE, checkBuilt = TRUE)
See more info here:
Is there a way to automate reinstalling packages and their dependencies in r?
I'm trying to load the catsM dataset, but continue to get this error. I've tried the basics, restarting Rstudio, re-installing the package, etc., but continue to get this error.
install.packages("boot")
Installing package into ‘C:/Users/becky/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.6/boot_1.3-25.zip'
Content type 'application/zip' length 643617 bytes (628 KB)
downloaded 628 KB
package ‘boot’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\becky\AppData\Local\Temp\RtmpgHPMII\downloaded_packages
> library(boot)
> datasets:catsM
Error: object 'datasets' not found
I have R version 3.4.3. I'm working on a school project with glmnet.
I've tried to install the package and I didn't get any error code, but when I ask for with library(glmnet) I get these errors.
I have tried to remove it, installing it back, install foreach alone: the same problem!!
install.packages("glmnet", dependencies=TRUE)
Installing package into �C:/Users/freel_000/Documents/R/win-library/3.4�
(as �lib� is unspecified)
also installing the dependency �foreach�
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/foreach_1.4.4.zip'
Content type 'application/zip' length 388581 bytes (379 KB)
downloaded 379 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/glmnet_2.0-13.zip'
Content type 'application/zip' length 1769167 bytes (1.7 MB)
downloaded 1.7 MB
package ‘foreach’ successfully unpacked and MD5 sums checked
package ‘glmnet’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\freel_000\AppData\Local\Temp\Rtmpy4iKye\downloaded_packages`
I've seen this: How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning?
and been through the list. No luck. I've also navigated via SSH to my library to see if there was some LOCK file or corrupt install. There is nothing there.
I literally just installed RStudio on Amazon EC2 and can't install the any new packages.
I've done it this way: https://aws.amazon.com/blogs/big-data/running-r-on-aws/
I've also used Ubuntu with Louis Anslett's AMI: http://www.louisaslett.com/RStudio_AMI/
I get the same problem in both. I have downloaded them manually and installed the tar.gz files from the temp directory. The CRAN repository seems to be fine because install.packages() downloads the tar.gz to /tmp/Rtmp2Rh9Zr/downloaded_packages/ just fine, but then the actual install process fails.
When I run install.packages("haven") for instance, it says
> install.packages("haven")
Installing package into ‘/home/jblocher/R/x86_64-redhat-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
also installing the dependencies ‘R6’, ‘assertthat’, ‘rlang’, ‘Rcpp’, ‘readr’, ‘hms’, ‘tibble’, ‘BH’
trying URL 'https://cran.rstudio.com/src/contrib/R6_2.2.1.tar.gz'
Content type 'application/x-gzip' length 325641 bytes (318 KB)
==================================================
downloaded 318 KB
trying URL 'https://cran.rstudio.com/src/contrib/assertthat_0.2.0.tar.gz'
Content type 'application/x-gzip' length 11612 bytes (11 KB)
==================================================
downloaded 11 KB
trying URL 'https://cran.rstudio.com/src/contrib/rlang_0.1.1.tar.gz'
Content type 'application/x-gzip' length 201419 bytes (196 KB)
==================================================
downloaded 196 KB
trying URL 'https://cran.rstudio.com/src/contrib/Rcpp_0.12.11.tar.gz'
Content type 'application/x-gzip' length 2485092 bytes (2.4 MB)
==================================================
downloaded 2.4 MB
trying URL 'https://cran.rstudio.com/src/contrib/readr_1.1.1.tar.gz'
Content type 'application/x-gzip' length 233793 bytes (228 KB)
==================================================
downloaded 228 KB
trying URL 'https://cran.rstudio.com/src/contrib/hms_0.3.tar.gz'
Content type 'application/x-gzip' length 7271 bytes
==================================================
downloaded 7271 bytes
trying URL 'https://cran.rstudio.com/src/contrib/tibble_1.3.1.tar.gz'
Content type 'application/x-gzip' length 91235 bytes (89 KB)
==================================================
downloaded 89 KB
trying URL 'https://cran.rstudio.com/src/contrib/BH_1.62.0-1.tar.gz'
Content type 'application/x-gzip' length 10181096 bytes (9.7 MB)
==================================================
downloaded 9.7 MB
trying URL 'https://cran.rstudio.com/src/contrib/haven_1.0.0.tar.gz'
Content type 'application/x-gzip' length 150016 bytes (146 KB)
==================================================
downloaded 146 KB
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘R6’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘assertthat’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘rlang’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘Rcpp’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘hms’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘BH’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘tibble’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘readr’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘haven’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmpia0VEs/downloaded_packages’
When I install it using the already downloaded package, it says
> install.packages("/tmp/Rtmp2Rh9Zr/downloaded_packages/haven_1.0.0.tar.gz")
Installing package into ‘/home/jblocher/R/x86_64-redhat-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘/tmp/Rtmp2Rh9Zr/downloaded_packages/haven_1.0.0.tar.gz’ is not available (for R version 3.3.3)
If you are providing an archive file to install.packages you may need to specify repos=NULL:
install.packages("/tmp/Rtmp2Rh9Zr/downloaded_packages/haven_1.0.0.tar.gz", repos=NULL)
On my EC2 instance, I ran into the same problems when trying to install packages on RStudio, e.g., car, that involve RAM-intensive compilations. This could be fixed by adding swap space as described here
http://www.exegetic.biz/blog/2015/06/amazon-ec2-adding-swap/
Hello
When I installing plink, I get the messages.
(My version 3.1.3)
In the site, http://healthstat.snu.ac.kr/CRAN/index.html
I can not find the "plink".
How can I use "plink"?
![enter image description here][1]
You need to specify the repos argument.
> install.packages("plink", repos = "http://www2.uaem.mx/r-mirror")
Installing package into ‘C:/.../R/win-library/3.1’
(as ‘lib’ is unspecified)
also installing the dependency ‘statmod’
trying URL 'http://www2.uaem.mx/r-mirror/bin/windows/contrib/3.1/statmod_1.4.17.zip'
Content type 'application/zip' length 155890 bytes (152 KB)
opened URL
downloaded 152 KB
trying URL 'http://www2.uaem.mx/r-mirror/bin/windows/contrib/3.1/plink_1.3-1.zip'
Content type 'application/zip' length 854055 bytes (834 KB)
opened URL
downloaded 834 KB
package ‘statmod’ successfully unpacked and MD5 sums checked
package ‘plink’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\...\Local\Temp\RtmpIzfu4y\downloaded_packages
> library(plink)
Loading required package: lattice