I'm running RStudio v1.2.5019.
The User folder on my laptop where the packages are stored is C:\Users\R Shiva
I am trying to install packages including car but I'm getting the following error.
Installing package into ‘C:/Users/R Shiva/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
also installing the dependency ‘carData’
There are binary versions available but the source versions are later:
binary source needs_compilation
carData 3.0-2 3.0-3 FALSE
car 3.0-4 3.0-5 FALSE
installing the source packages ‘carData’, ‘car’
trying URL 'https://cran.rstudio.com/src/contrib/carData_3.0-3.tar.gz'
Content type 'application/x-gzip' length 995544 bytes (972 KB)
downloaded 972 KB
trying URL 'https://cran.rstudio.com/src/contrib/car_3.0-5.tar.gz'
Content type 'application/x-gzip' length 504300 bytes (492 KB)
downloaded 492 KB
Warning: invalid package 'C:\Users\R'
Warning: invalid package 'Shiva\AppData\Local\Temp\RtmpU7R8OM/downloaded_packages/carData_3.0-3.tar.gz'
Error: ERROR: no packages specified
Warning in install.packages :
installation of package ‘carData’ had non-zero exit status
Warning: invalid package 'C:\Users\R'
Warning: invalid package 'Shiva\AppData\Local\Temp\RtmpU7R8OM/downloaded_packages/car_3.0-5.tar.gz'
Error: ERROR: no packages specified
Warning in install.packages :
installation of package ‘car’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\R Shiva\AppData\Local\Temp\RtmpU7R8OM\downloaded_packages’
Related
i am trying to install the package "bfast" in R studio running R 3.5.3 and it throws up dependency error Warning in install.packages :
dependency ‘quadprog’ is not available
i tried installing it using install.packages("bfast") and when i received the dependency error, i tried to install quadprog dependency as a package seperately like install.packages("quadprog") but then it showed me this error,Warning in install.packages :
package ‘quadprog’ is not available (for R version 3.5.3)
here is the console status while installing bfast package.
install.packages("bfast")
Installing package into ‘/home/rehan/R/x86_64-pc-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘quadprog’ is not available
also installing the dependencies ‘tseries’, ‘forecast’
trying URL 'https://cloud.r-project.org/src/contrib/tseries_0.10-46.tar.gz'
Content type 'application/x-gzip' length 164471 bytes (160 KB)
==================================================
downloaded 160 KB
trying URL 'https://cloud.r-project.org/src/contrib/forecast_8.6.tar.gz'
Content type 'application/x-gzip' length 908972 bytes (887 KB)
==================================================
downloaded 887 KB
trying URL 'https://cloud.r-project.org/src/contrib/bfast_1.5.7.tar.gz'
Content type 'application/x-gzip' length 59697 bytes (58 KB)
==================================================
downloaded 58 KB
ERROR: dependency ‘quadprog’ is not available for package ‘tseries’
* removing ‘/home/rehan/R/x86_64-pc-linux-gnu-library/3.5/tseries’
Warning in install.packages :
installation of package ‘tseries’ had non-zero exit status
ERROR: dependency ‘tseries’ is not available for package ‘forecast’
* removing ‘/home/rehan/R/x86_64-pc-linux-gnu-library/3.5/forecast’
Warning in install.packages :
installation of package ‘forecast’ had non-zero exit status
ERROR: dependency ‘forecast’ is not available for package ‘bfast’
* removing ‘/home/rehan/R/x86_64-pc-linux-gnu-library/3.5/bfast’
Warning in install.packages :
installation of package ‘bfast’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpSfjWA6/downloaded_packages’
How can i properly install the package with all it's dependencies?
I just had the same problem. I looked where R was looking from (https://cran.rstudio.com/bin/windows/contrib/3.5/) and downloaded the 'quadprog' zip file from there. Then, in R or Rstudio, you go to install packages from "package archive file". It worked for me, I hope it does for you.
There is a new version of Quadprog: 1.5-7 that can install on R above 3.1:https://cran.r-project.org/web/packages/quadprog/index.html
That solved it for me.
I'm using Version 1.1.453 of RStudio. I'm receiving an error when trying to install R Shiny using the following code (note: I've tried several different mirrors).
install.packages("shiny", repo='http://nbcgib.uesc.br/mirrors/cran/', dependencies = TRUE)
Here's the error message I'm getting. Any sense of what's going on?
Installing package into ‘C:/Users/NHK/Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)
also installing the dependencies ‘httpuv’, ‘later’, ‘promises’, ‘rlang’
There are binary versions available but the source versions are later:
binary source needs_compilation
httpuv 1.3.3 1.4.4.1 TRUE
shiny 1.0.2 1.1.0 FALSE
Binaries will be installed
Packages which are only available in source form, and may need compilation of
C/C++/Fortran: ‘later’ ‘promises’ ‘rlang’
These will not be installed
trying URL
'http://nbcgib.uesc.br/mirrors/cran/bin/windows/contrib/3.2/httpuv_1.3.3.zip'
Content type 'application/zip' length 872756 bytes (852 KB)
downloaded 852 KB
package ‘httpuv’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\NHK\AppData\Local\Temp\RtmpCqqSmI\downloaded_packages
installing the source package ‘shiny’
trying URL 'http://nbcgib.uesc.br/mirrors/cran/src/contrib/shiny_1.1.0.tar.gz'
Content type 'application/x-gzip' length 2350156 bytes (2.2 MB)
downloaded 2.2 MB
ERROR: dependencies 'later', 'promises', 'rlang' are not available for package 'shiny'
* removing 'C:/Users/NHK/Documents/R/win-library/3.2/shiny'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-32~1.2/bin/x64/R" CMD INSTALL -l
"C:\Users\NHK\Documents\R\win-library\3.2"
C:\Users\N~1\AppData\Local\Temp\RtmpCqqSmI/downloaded_packages/shiny_1.1.0.
tar.gz' had status 1
Warning in install.packages :
installation of package ‘shiny’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\NHK\AppData\Local\Temp\RtmpCqqSmI\downloaded_packages’
I've seen this: How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning?
and been through the list. No luck. I've also navigated via SSH to my library to see if there was some LOCK file or corrupt install. There is nothing there.
I literally just installed RStudio on Amazon EC2 and can't install the any new packages.
I've done it this way: https://aws.amazon.com/blogs/big-data/running-r-on-aws/
I've also used Ubuntu with Louis Anslett's AMI: http://www.louisaslett.com/RStudio_AMI/
I get the same problem in both. I have downloaded them manually and installed the tar.gz files from the temp directory. The CRAN repository seems to be fine because install.packages() downloads the tar.gz to /tmp/Rtmp2Rh9Zr/downloaded_packages/ just fine, but then the actual install process fails.
When I run install.packages("haven") for instance, it says
> install.packages("haven")
Installing package into ‘/home/jblocher/R/x86_64-redhat-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
also installing the dependencies ‘R6’, ‘assertthat’, ‘rlang’, ‘Rcpp’, ‘readr’, ‘hms’, ‘tibble’, ‘BH’
trying URL 'https://cran.rstudio.com/src/contrib/R6_2.2.1.tar.gz'
Content type 'application/x-gzip' length 325641 bytes (318 KB)
==================================================
downloaded 318 KB
trying URL 'https://cran.rstudio.com/src/contrib/assertthat_0.2.0.tar.gz'
Content type 'application/x-gzip' length 11612 bytes (11 KB)
==================================================
downloaded 11 KB
trying URL 'https://cran.rstudio.com/src/contrib/rlang_0.1.1.tar.gz'
Content type 'application/x-gzip' length 201419 bytes (196 KB)
==================================================
downloaded 196 KB
trying URL 'https://cran.rstudio.com/src/contrib/Rcpp_0.12.11.tar.gz'
Content type 'application/x-gzip' length 2485092 bytes (2.4 MB)
==================================================
downloaded 2.4 MB
trying URL 'https://cran.rstudio.com/src/contrib/readr_1.1.1.tar.gz'
Content type 'application/x-gzip' length 233793 bytes (228 KB)
==================================================
downloaded 228 KB
trying URL 'https://cran.rstudio.com/src/contrib/hms_0.3.tar.gz'
Content type 'application/x-gzip' length 7271 bytes
==================================================
downloaded 7271 bytes
trying URL 'https://cran.rstudio.com/src/contrib/tibble_1.3.1.tar.gz'
Content type 'application/x-gzip' length 91235 bytes (89 KB)
==================================================
downloaded 89 KB
trying URL 'https://cran.rstudio.com/src/contrib/BH_1.62.0-1.tar.gz'
Content type 'application/x-gzip' length 10181096 bytes (9.7 MB)
==================================================
downloaded 9.7 MB
trying URL 'https://cran.rstudio.com/src/contrib/haven_1.0.0.tar.gz'
Content type 'application/x-gzip' length 150016 bytes (146 KB)
==================================================
downloaded 146 KB
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘R6’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘assertthat’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘rlang’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘Rcpp’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘hms’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘BH’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘tibble’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘readr’ had non-zero exit status
Error in library(haven) : there is no package called ‘haven’
Execution halted
Warning in install.packages :
installation of package ‘haven’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmpia0VEs/downloaded_packages’
When I install it using the already downloaded package, it says
> install.packages("/tmp/Rtmp2Rh9Zr/downloaded_packages/haven_1.0.0.tar.gz")
Installing package into ‘/home/jblocher/R/x86_64-redhat-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘/tmp/Rtmp2Rh9Zr/downloaded_packages/haven_1.0.0.tar.gz’ is not available (for R version 3.3.3)
If you are providing an archive file to install.packages you may need to specify repos=NULL:
install.packages("/tmp/Rtmp2Rh9Zr/downloaded_packages/haven_1.0.0.tar.gz", repos=NULL)
On my EC2 instance, I ran into the same problems when trying to install packages on RStudio, e.g., car, that involve RAM-intensive compilations. This could be fixed by adding swap space as described here
http://www.exegetic.biz/blog/2015/06/amazon-ec2-adding-swap/
Im trying to install the package twitteR in RStudio but I am getting errors with the dependencies of DBI package and so the installation of twitteR isn't completed.
Here is the error....I hope someone can help out.
install.packages("twitteR")
>Installing package into ‘D:/Users/vijhaver/Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)
also installing the dependency ‘DBI’
> There is a binary version available but the source version is later:
binary source needs_compilation
DBI 0.3.1 0.4 FALSE
>trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/twitteR_1.1.9.zip'
Content type 'application/zip' length 446779 bytes (436 KB)
downloaded 436 KB
>package ‘twitteR’ successfully unpacked and MD5 sums checked
>The downloaded binary packages are in
C:\Users\vijhaver\AppData\Local\Temp\RtmpacWdm7\downloaded_packages
installing the source package ‘DBI’
>trying URL 'https://cran.rstudio.com/src/contrib/DBI_0.4.tar.gz'
Content type 'application/x-gzip' length 141460 bytes (138 KB)
downloaded 138 KB
>'D:\Program' is not recognized as an internal or external command,
operable program or batch file.
Warning in install.packages :
running command '"D:/Program Files/R/R-3.2.1/bin/x64/R" CMD INSTALL -l "D:\Users\vijhaver\Documents\R\win-library\3.2" C:\Users\vijhaver\AppData\Local\Temp\RtmpacWdm7/downloaded_packages/DBI_0.4.tar.gz' had status 1
Warning in install.packages :
installation of package ‘DBI’ had non-zero exit status
>The downloaded source packages are in
‘C:\Users\vijhaver\AppData\Local\Temp\RtmpacWdm7\downloaded_packages’
Warning messages:
1: In .HTMLsearch(query) : Unrecognized search field: title
2: In .HTMLsearch(query) : Unrecognized search field: keyword
3: In .HTMLsearch(query) : Unrecognized search field: alias
when trying to install a package:
> install.packages("mlr")
Installing package into ‘/home/kisco/R/x86_64-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependencies ‘plyr’, ‘dplyr’, ‘lazyeval’ are not available
also installing the dependencies ‘scales’, ‘ggplot2’, ‘ggvis’, ‘reshape2’
trying URL 'http://cran.rstudio.com/src/contrib/scales_0.2.5.tar.gz'
Content type 'application/x-gzip' length 56346 bytes (55 Kb)
opened URL
==================================================
downloaded 55 Kb
trying URL 'http://cran.rstudio.com/src/contrib/ggplot2_1.0.1.tar.gz'
Content type 'application/x-gzip' length 2351203 bytes (2.2 Mb)
opened URL
==================================================
downloaded 2.2 Mb
trying URL 'http://cran.rstudio.com/src/contrib/ggvis_0.4.2.tar.gz'
Content type 'application/x-gzip' length 728345 bytes (711 Kb)
opened URL
==================================================
downloaded 711 Kb
trying URL 'http://cran.rstudio.com/src/contrib/reshape2_1.4.1.tar.gz'
Content type 'application/x-gzip' length 34693 bytes (33 Kb)
opened URL
==================================================
downloaded 33 Kb
trying URL 'http://cran.rstudio.com/src/contrib/mlr_2.4.tar.gz'
Content type 'application/x-gzip' length 440988 bytes (430 Kb)
opened URL
==================================================
downloaded 430 Kb
ERROR: dependency ‘plyr’ is not available for package ‘scales’
* removing ‘/home/kisco/R/x86_64-pc-linux-gnu-library/3.0/scales’
Warning in install.packages :
installation of package ‘scales’ had non-zero exit status
ERROR: dependencies ‘dplyr’, ‘lazyeval’ are not available for package ‘ggvis’
* removing ‘/home/kisco/R/x86_64-pc-linux-gnu-library/3.0/ggvis’
Warning in install.packages :
installation of package ‘ggvis’ had non-zero exit status
ERROR: dependency ‘plyr’ is not available for package ‘reshape2’
* removing ‘/home/kisco/R/x86_64-pc-linux-gnu-library/3.0/reshape2’
Warning in install.packages :
installation of package ‘reshape2’ had non-zero exit status
ERROR: dependencies ‘plyr’, ‘reshape2’, ‘scales’ are not available for package ‘ggplot2’
* removing ‘/home/kisco/R/x86_64-pc-linux-gnu-library/3.0/ggplot2’
Warning in install.packages :
installation of package ‘ggplot2’ had non-zero exit status
ERROR: dependencies ‘ggplot2’, ‘ggvis’, ‘plyr’, ‘reshape2’ are not available for package ‘mlr’
removing ‘/home/kisco/R/x86_64-pc-linux-gnu-library/3.0/mlr’
Warning in install.packages :
installation of package ‘mlr’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmp3AjleG/downloaded_packages’
I keep getting th eerror" warning in install.packages insallation of package ... had non zero exit status.
What am I doing wrong? How do I Install MLR?
You have an outdated version of R. Normally dplyr and your other dependencies would be automatically installed, but in this case they are labelled as not working with older versions of R, so throw an error.
You have version 3.0.2, which is out of date. As of now the current version is 3.2.1. You should upgrade (you don't have the most up to date version of r-base, repos are often behind - try getting the binary from here).
If you don't want to update you can use the methods described in answers to this question to install older versions of the packages which may be compatible with your version - install older version of R package.