I am on RHEL. I Installed python by following https://www.rosehosting.com/blog/how-to-install-python-3-6-4-on-centos-7/. I am getting an error when trying to install requests-kerberos
pip3 install requests-kerberos
returns
src/kerberos.c:17:20: fatal error: Python.h: No such file or directory
#include <Python.h>
^
compilation terminated.
error: command 'gcc' failed with exit status 1
sudo yum install gcc
Loaded plugins: langpacks, product-id, search-disabled-repos, subscription-manager
Package gcc-4.8.5-39.el7.x86_64 already installed and latest version
Nothing to do
Then I tried
sudo yum install python3-devel
and got
Loaded plugins: langpacks, product-id, search-disabled-repos, subscription-manager
No package python3-devel available.
Error: Nothing to do
Then I tried
sudo yum install python36-devel
and got
Error: Package: python36-devel-3.6.8-2.el7.ius.x86_64 (ius)
Requires: python36 = 3.6.8-2.el7.ius
Installed: python3-3.6.8-10.el7.x86_64 (#rhel-7-server-rpms)
python36 = 3.6.8-10.el7
Available: python36-3.6.8-2.el7.ius.x86_64 (ius)
python36 = 3.6.8-2.el7.ius
Error: Package: python36-devel-3.6.8-2.el7.ius.x86_64 (ius)
Requires: python36-libs(x86-64) = 3.6.8-2.el7.ius
Installed: python3-libs-3.6.8-10.el7.x86_64 (#rhel-7-server-rpms)
python36-libs(x86-64) = 3.6.8-10.el7
Available: python36-libs-3.6.8-2.el7.ius.x86_64 (ius)
python36-libs(x86-64) = 3.6.8-2.el7.ius
You are on RHEL, yet you follow a random Centos blog post. Below is a summary of some suggestions for a better python36 on both Centos and RHEL (6 or 7) from Red Hat Developers Blog:
Enable SCL
Software Collections are RedHat Satellite repositories that also work if your servers are air-gapped i.e. have no internet.
On Centos:
yum install centos-release-scl
On RHEL7
yum-config-manager --enable rhel-server-rhscl-7-rpms
Install the main SCL package:
yum install rh-python36
Start using the Software Collection you just installed:
scl enable rh-python36 bash
Upgrade pip3 with itself, and update setuptools:
pip3 install --upgrade pip
pip3 install --upgrade setuptools
Install requests-kerberos:
pip3 install requests-kerberos
Notes:
is equivalent to bash sourcing the file /opt/rh/rh-python36/enable
installing the main packages is sufficient by having these:
Related
Desire is to installed R {sf} and {RPostgres} packages on Ubuntu 18.04.4.
Trying:
R$> install.packages("sf")
configure: error: gdal-config not found or not executable.
Some SO searching (eg https://stackoverflow.com/a/49181048/2802810) suggests this:
sh$> sudo apt-get install libgdal-dev
The following packagess have unmet dependencies: libpq-dev :
Depends: libpq5 (= 10.12-0Ubuntu0.18.04.1) but 12.3-1.pgdg18.04+1 is
to be installed E: Unable to correct problems, you have broken
packages.
I also need libpq-dev for R {RPostgres}.
You may want to add PPA, depending on your R version.
https://launchpad.net/~marutter/+archive/ubuntu/c2d4u
https://launchpad.net/~marutter/+archive/ubuntu/c2d4u3.5
https://launchpad.net/~c2d4u.team/+archive/ubuntu/c2d4u4.0+
After adding PPA, you can install using sudo apt install r-cran-sf and sudo apt install r-cran-rpostgres
OKaaaay. The box I'm working in didn't have a Postgres repo installed (https://www.postgresql.org/download/linux/ubuntu/). Never libpq libs and that was all it needed.
I like to install "rgl" package version 0.100.19 (since the other package depends on this version) in anaconda/jupyter notebook environment and received error.
configure: error: X11 not found but required, configure aborted
I tried
sudo apt-get install xorg
sudo apt-get install libx11-dev
sudo apt-get install libglu1-mesa-dev
sudo apt-get install libfreetype6-dev
sudo apt-get install r-cran-rgl
conda install -c conda-forge xorg-libx11
conda install -c anaconda mesa
but, they did not help yet.
install.packages("rgl")
configure: error: X11 not found but required, configure aborted
I came across this problem, my solution was to:
$ conda install r-rgl
It seems like the conda install goes to the conda R (see this with which R), and the way I found to get rgl installed on conda's R version was via conda install.
I tried to install PKI library but got this error
ERROR: compilation failed for package ‘PKI’
when I already installed "openssl" and update package index
sudo apt-get update
sudo apt-get install libssl-dev
What else can I do to help install "PKI" library in R.
Thank you.
I'm using R 3.3.2 and Ubuntu 16.10. I'm unable to install rgl and rgdal packages.
When I use
install.packages("rgl")
gives the following error message:
configure: error: X11 not found but required, configure aborted.
ERROR: configuration failed for package ‘rgl’
When I use
install.packages("rgdal")
gives the following error message:
configure: error: gdal-config not found or not executable.
ERROR: configuration failed for package ‘rgdal’
Edited
When I use
sudo apt-get install r-cran-rgl
in Ubuntu Terminal, it says
r-cran-rgl is already the newest version (0.95.1441-2)
However, the latest version of rgl is 0.96.0.
When I use
sudo apt-get install libgdal-dev libgeos++-dev
it throws the following error:
The following packages have unmet dependencies:
libgdal-dev : Depends: libopenjp2-7-dev but it is not going to be installed
I found a solution that was useful for me here: http://robinlovelace.net/r/2013/11/26/installing-rgdal-on-ubuntu.html.
In short, the solution would be this tree command lines:
sudo apt-get install aptitude # install aptitude as an alternative to apt-get
sudo aptitude install libgdal-dev # install the package (you may have to respond to queries here)
sudo aptitude install libproj-dev # install the proj.4 projection library
For rgl, just do sudo apt-get install r-cran-rgl.
For rgdal, follow the recommendation of the spatial folks eg here for sf and do this
add ubuntugis-unstable to the package repositories (e.g. with sudo add-apt-repository ppa:ubuntugis/ubuntugis-unstable and then sudo apt-get install libgdal-dev libgeos++-dev)
For general 'R on Ubuntu or Debian' questions, go to the r-sig-debian list.
Edit: Note that you don't need need ubuntugis-unstable repo if the current/older libgdal, libproj4 versions are good enough for you. Those are in the Ubuntu distro so just do sudo apt-get install ....
These installations worked for me provided that, in addition, I installed libxerces-c28. The need for the related shared object was indicated in the error log the first time I tried, after doing the installations indicated (libgdal, libgdal-dev, etc)
When updating to R 3.2.0 I had to reinstall seewave.
I managed to install the required packages fftw, tuneR, rgl, and rpanel.
But, when trying to compile seewave I got the message:
stft.c:3:11: fatal error: 'sndfile.h' file not found
On linux it is sufficient to install libsndfile library, for example with
sudo apt-get install libsndfile1-dev
On OS X just do:
brew install libsndfile
Pisca46 - Installing via 'brew install libsndfile' helped.
On CentOS, the package has a different name :
sudo yum install libsndfile-devel
I also had to install the fftw-devel yum package