I'm running rhel7. When I try to yum install glibc, it looks like it's already installed:
yum install glibc
Package matching glibc-2.17-260.el7_6.5.x86_64 already installed. Checking for update.
But when I thin try to install glibc-headers, it fails at the following error:
Error: Package: glibc-headers-2.17-260.el7_6.5.x86_64 (prod1)
Requires: glibc = 2.17-260.el7_6.5
I've searched around and can't figure out what's going on. I've clean installed glibc. The closest I've come is to this: https://bugzilla.redhat.com/show_bug.cgi?id=1717626, but the advice didn't help.
How can I figure out the issue?
Try to uninstall glibc and reinstall it :
# yum remove glibc
# yum install glibc
Related
I would like to be able to install the rstan package from binaries (without compiling from source). This blog post by Dirk Eddelbuettel has some clear instructions that should enable me to do exactly that. However I get the following error message when I try and install RStan. Here are the commands I used.
docker run --rm -ti rocker/r-ubuntu:18.04 bash
apt-get update; apt-get dist-upgrade -y
apt-get install -y r-cran-rstan
This produces the following error message.
Reading package lists... Done
Building dependency tree
Reading state information... Done
Some packages could not be installed. This may mean that you have
requested an impossible situation or if you are using the unstable
distribution that some required packages have not yet been created
or been moved out of Incoming.
The following information may help to resolve the situation:
The following packages have unmet dependencies:
r-cran-rstan : Depends: r-cran-v8 but it is not going to be installed
E: Unable to correct problems, you have held broken packages.
Installing the R tidyverse package using Dirk's instructions works fine. I am working on a Ubuntu OS within the Windows Subsystem for Linux (WSL-2).
These things can happen -- the best best is to then try
sudo apt install r-cran-v8
which reveals r-cran-node64 is required but not available.
I work much more with 20.04 than 18.04 so I don't what is going on here. I would recommend asking on the r-sig-debian list if anybody else has seen this.
PS And if you try 20.04 instead it works there.
Desire is to installed R {sf} and {RPostgres} packages on Ubuntu 18.04.4.
Trying:
R$> install.packages("sf")
configure: error: gdal-config not found or not executable.
Some SO searching (eg https://stackoverflow.com/a/49181048/2802810) suggests this:
sh$> sudo apt-get install libgdal-dev
The following packagess have unmet dependencies: libpq-dev :
Depends: libpq5 (= 10.12-0Ubuntu0.18.04.1) but 12.3-1.pgdg18.04+1 is
to be installed E: Unable to correct problems, you have broken
packages.
I also need libpq-dev for R {RPostgres}.
You may want to add PPA, depending on your R version.
https://launchpad.net/~marutter/+archive/ubuntu/c2d4u
https://launchpad.net/~marutter/+archive/ubuntu/c2d4u3.5
https://launchpad.net/~c2d4u.team/+archive/ubuntu/c2d4u4.0+
After adding PPA, you can install using sudo apt install r-cran-sf and sudo apt install r-cran-rpostgres
OKaaaay. The box I'm working in didn't have a Postgres repo installed (https://www.postgresql.org/download/linux/ubuntu/). Never libpq libs and that was all it needed.
When updating to R 3.2.0 I had to reinstall seewave.
I managed to install the required packages fftw, tuneR, rgl, and rpanel.
But, when trying to compile seewave I got the message:
stft.c:3:11: fatal error: 'sndfile.h' file not found
On linux it is sufficient to install libsndfile library, for example with
sudo apt-get install libsndfile1-dev
On OS X just do:
brew install libsndfile
Pisca46 - Installing via 'brew install libsndfile' helped.
On CentOS, the package has a different name :
sudo yum install libsndfile-devel
I also had to install the fftw-devel yum package
I use Ubuntu 14.04 and I have R version 3.1.2. When I am trying to install the Rmpfr package, I get this error
configure: error: Header file mpfr.h not found; maybe use --with-mpfr-include=INCLUDE_PATH
I am new to Linux, so I don't know exactly how to fix this.
You should install libmpfr-dev:
sudo apt-get install libmpfr-dev
(answer from the first, highly upvoted comment by #user3710546)
If using Amazon Linux, CentOS, or anything else that comes bundled with yum, do this:
sudo yum install mpfr-devel
I am trying to install the package mvoutlier but following error occurs during installation:
install.packages("mvoutlier")
configure: error: missing required header GL/gl.h
ERROR: configuration failed for package ‘rgl’
* removing ‘/home/sam/R/x86_64-pc-linux-gnu-library /2.15/rgl’
ERROR: dependency ‘rgl’ is not available for package ‘compositions’
* removing ‘/home/sam/R/x86_64-pc-linux-gnu-library/2.15/compositions’
ERROR: dependency ‘compositions’ is not available for package ‘mvoutlier’
* removing ‘/home/sam/R/x86_64-pc-linux-gnu-library/2.15/mvoutlier’
After that I have install the rgl package successfully, then I tried to install the compositions package then the again same error occurs. Then I have again tried to install the mvoutlier package the same error occurs.
Can anyone let me know how I can resolve this problem. Thanking you in advance.
I suspect you are running Ubuntu 12.04.I think you're going to find that this works for the GL/gl.h problem:
install these at the regular old terminal, ie pretend R doesn't exist for now:
libglu1-mesa-dev freeglut3-dev mesa-common-dev
You might get the following error later (in R) because of a tcl b****/gripe/complaint:
Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
[tcl] can't find package BWidget.
To fix this problem, if you have it:
sudo apt-get install bwidget
These are not R problems. They are OS problems!
I ran into the same issue in between others on a Ubuntu based Linux distro (Linux Mint). Here I will share the worklog I'd done to fix it.
The full fix was:
apt-get install libx11-dev mesa-common-dev libglu1-mesa-dev
Worklog
The first error was related to missing devel libraries of X11:
configure: error: X11 not found but required, configure aborted.
I fixed it installing:
apt-get install libx11-dev
However, after fix the issue, I felt into a new one like this one:
configure: error: missing required header GL/gl.h
ERROR: configuration failed for package ‘rgl’
I checked the library on the repository:
# dpkg -S /usr/include/GL/gl.h
dpkg-query: no path found matching pattern /usr/include/GL/gl.h
To fix this issue, install :
apt-get install mesa-common-dev
Then, I was prompt by a new error:
configure: error: missing required header GL/glu.h
To fix the issue, install the libglu1 devel libraries:
apt-get install libglu1-mesa-dev
configure: error: missing required header GL/gl.h
normally means you haven't installed the -dev version of a package, in this case GL.
On my system, GL/gl.h is owned by mesa-common-dev
$ dpkg -S /usr/include/GL/gl.h
mesa-common-dev: /usr/include/GL/gl.h
which would have been installed with apt-get install mesa-common-dev or via some GUI magic.
On Ubuntu 16.04, I solved this problem (during rgl package installation) with sudo apt-get install libglu1-mesa-dev
the current fedora package manager will fail to find these libraries as shown. Instead you need to do
sudo dnf install mesa-libGL-devel mesa-libGLU-devel
Based on the work breakdown by 3manuek, I figured only the libglu1-mesa-dev library was needed in ubuntu 16.04 LTS, and it worked.
On, RHEL, sudo yum install mesa-libGLU-devel worked.
I encountered an equivalent problem when testing a package that required 'rgl' on Travis. The problem is that the operating system lacks the necessary GL files on which the 'rgl' package draws.
A thread at R-forge offers the ingenious solution of running apt-get install r-cran-rgl, which will pull in any of the GL dependencies not already present on the operating system. This seems simpler than second-guessing which specific dependency is missing, and it remains possible to install a more recent version of 'rgl' if required.