reactive expression for raster in shiny - r

I am working on a simple shiny app.
Here is my data.
library(data.table)
library(ggthemes)
library(ggplot2)
library(shiny)
tempList <- list()
for(i in 1989:1991){
temp <- as.data.frame(cbind(runif(10,-10.85, 20.02),runif(10, 49.82,59.47)))
temp$value <- rnorm(10)
temp$Year <-i
tempList[[i]] <- temp
}
my.df <- rbindlist(tempList)
names(my.df)[1:2] <- c('lon', 'lat')
I want to make a shiny app that displays the raster for each year based on which year the users select
ui <- fluidPage(
titlePanel('My dat'),
sliderInput('yearRef','Select Year',min=1989,max=1991,value=1),
plotOutput(outputId = 'test')
)
server <- function(input, output) {
tempI <- reactive({my.df %>% dplyr::filter(Year == input$yearRef)})
output$test <- renderPlot({
ggplot() + geom_raster(data = tempI, aes(x = lon, y = lat, fill = value)) +
theme_map() + coord_equal() + scale_fill_viridis_c(option = 'C')
})
}
shinyApp(ui, server)
It gives me an error that tempI is not a dataframe which I understand is causing since tempI is class reactiveExpr. How do I correct it?

when working with reactive expressions in shiny you have to use paranthesis.
In your case:
renderPlot({
ggplot() + geom_raster(data = tempI(), aes(x = lon, y = lat, fill = value)) +
theme_map() + coord_equal() + scale_fill_viridis_c(option = 'C')
})
You can think of tempI() as a function that knows when its return-value is outdated. As soon as this happens (i.e. as soon as the user changes the slider)
tempI has to be reevaluated. Hence it works like a function. This also justifies the name reactive.
You can learn more about reactive expressions here.

Related

[R Shiny]: How to filter by time range on the x-axis and simultaneously have two different variables on the y axis in R Shiny app

I want to build a shiny app using Covid-19 data (https://data.europa.eu/euodp/de/data/dataset/covid-19-coronavirus-data) and I would like to show barplot with ggplot where you can see the development of worldwide cases or deaths over time. I would furthermore like to have a dateRangeInput in which you can set a time period. At the same time I have on the y axis either the possibility to choose from selectInput either the variable "cases" or "deaths". I can do this separately but I can't figure out how to have this in one final plot.
It works with the time range if I use this code:
ui <- fluidPage(
titlePanel("Covid-19 by Country"),
sidebarLayout(
sidebarPanel(
selectInput(inputId = "y", label = "Y-Axe:",
choices=c("cases", "deaths"),
selected = "cases"),
dateRangeInput("datum", "Zeitraum auswählen", start = min(covid_worldwide$dateRep), end = max(covid_worldwide$dateRep), min = min(covid_worldwide$dateRep), max = max(covid_worldwide$dateRep), format = "dd.mm.yyyy", language = "de")
),
mainPanel(
plotOutput("covidPlot")
)
)
)
server <- function(input, output, session) {
s <- reactive({
covid_worldwide %>%
filter(
as.Date(dateRep) >= as.Date(input$datum[1]),
as.Date(dateRep) <= as.Date(input$datum[2])
)
})
output$covidPlot <- renderPlot({
ggplot(data= s(), aes(x = dateRep, y = cases)) +
geom_bar(stat="identity", fill="red") + theme_classic() + xlab("Zeitraum") + ylab("Anzahl")
}
)}
shinyApp(ui = ui, server = server)
It works also if I do not change the time period but give two different variables for the y-axis, see following code (the UI is the same as above):
server <- function(input, output, session) {
s <- reactive({
covid_worldwide %>%
filter(
as.Date(dateRep) >= as.Date(input$datum[1]),
as.Date(dateRep) <= as.Date(input$datum[2])
)
})
yvar <- reactive({
if ( "cases" %in% input$y) return(covid_worldwide$cases)
if ( "deaths" %in% input$y) return(covid_worldwide$deaths)
})
output$covidPlot <- renderPlot({
ggplot(data= s(), aes(x = dateRep, y = yvar())) +
geom_bar(stat="identity", fill="red") + theme_classic() + xlab("Zeitraum") + ylab("Anzahl")
}
)}
shinyApp(ui = ui, server = server)
But if I then try to change the time period in the shiny app I receive this error: "Aesthetics must be either length 1 or the same as the data (26852): y"
Does anyone have an idea on how to make the two things in one ggplot barplot work? Thank you in advance!
You simply have to map input$y on y in your plotting code. Additionally as the input is a character it's convenient to switch to aes_string instead of aes as it allows to pass the variables as names or strings to ggplot().
The first version does not work as you map cases on y. The second one does not work as your reactive yvar extracts a vector from the original unfiltered df. Therefore the length of yvar is greater than the number of rows of the filtered df or the length of your date variable.
output$covidPlot <- renderPlot({
ggplot(data= s(), aes_string(x = "dateRep", y = input$y)) +
geom_bar(stat="identity", fill="red") + theme_classic() + xlab("Zeitraum") + ylab("Anzahl")
}

Error: Evaluation error: argument of length 0. R Shiny 1:nrow

My file is one set of game data and PitchNo tells the pitch of the game. I am trying to generate plots of each batter's pitches seen in a game and I have labeled the PitchNo in the ggplot function. I want my plot for each batter to label the pitches seen, say 1-10, but instead it is still labeling them as the PitchNo of the game.
I added Batter$PitchNo <- 1:nrow(Batter) in my reactive filter. That line of code works in normal R but I cannot seem to find a way to make in work in a Shiny app.
library(shiny)
library(tidyverse)
GameDataFile <- read_csv("GameDataFile.csv")
GameDataFile %>% group_by(PitchNo)
playerlist <- sort(unique(GameDataFile$Batter))
ui = fluidPage(
titlePanel("Title"),
sidebarLayout(
sidebarPanel(
selectInput(
inputId="Batter1",
label="Player:",
choices = playerlist)
),
mainPanel(
plotOutput("myZone")
)))
server = function(input, output){
output$myZone <- renderPlot({
GameDataFile$PlateLocSide <- (GameDataFile$PlateLocSide * -1)
newdata <- reactive({
GameDataFile %>% filter(
Batter %in% c(input$Batter1),
Batter$PitchNo <- 1:nrow(Batter)) # Error is here
})
ggplot(data = newdata(), aes(x = PlateLocSide, y = PlateLocHeight)) +
xlim(-2.5,2.5) + ylim(0,5) + scale_fill_viridis_c() + geom_point() +
labs(x = "", y = "") + facet_wrap(~ Batter, ncol = 2) +
geom_text(aes(label = PitchNo), vjust = -0.5) + theme_bw() +
theme(strip.text = element_text(size=20, face="bold"))
}, width=400, height=500)
}
shinyApp(ui = ui, server = server)

Reactive Shiny Plot doesn't display any plot.

I have a dataset with home values for all 50 states over ~30 years. Columns include State, Year, Value, etc. I am trying to create an interactive Shiny app where the user can select certain states so they will be the only ones displayed in the plot. I have successfully created the plot of all states independently where Year is on the x-axis and Value is on the y-axis, colored by State, and also have successfully subset the dataset so that only one state plots.
I am new to Shiny and having issues having anything other than the Input checkBox feature work in this. Is there something obvious I am missing?
ui <- fluidPage(
checkboxGroupInput(inputId = "state", label = "States", choices = levels(AllData2$STATE),
plotOutput(outputId = "hist")))
server <- function(input, output) {
output$hist <- renderPlot({
plot(data = subset(AllData2, AllData2 == input$state), mapping = aes(x = Date, y = HomeValue,
color = STATE) + geom_line(size=2, alpha=0.8) +
scale_y_continuous(breaks = seq(0, 1000000, 50000)) +
scale_x_continuous(breaks = seq(1975, 2020, 5)) +
ylab("Value in Dollars") + xlab("Year"))
})
}
shinyApp(ui = ui, server = server)
I get no output in my Shiny App except the checkbox options. Thank you for any help.
There are only syntax errors in your code. Many of them:
You have included plotOutput() inside the checkbox group, please place it outside it.
Use ggplot() instead of plot()
You have included everything inside plot() If you use ggplot() the syntax is: ggplot(data=AllData,mapping=aes())+geom_line()+scale_y_continuous()+scale_x_continuous()+labs(x="This is X label",y="This is ylab",color="This is the color legend label")
Your code will work after fixing these problems
Just copy paste this if you want instant result:
library(shiny)
library(ggplot2)
library(dplyr)
ui <- fluidPage(
column(12,checkboxGroupInput(inputId = "state", label = "States", choices = c(1,2,3,4,5))),
column(12,plotOutput(outputId = "hist")))
server <- function(input, output) {
output$hist <- renderPlot({
ggplot(data = subset(AllData2, AllData2$STATE %in% input$state), mapping = aes(x = Date, y = HomeValue,
color = STATE)) + geom_line(size=2, alpha=0.8) +
scale_y_continuous(breaks = seq(0, 1000000, 50000)) +
scale_x_continuous(breaks = seq(1975, 2020, 5)) +labs(x="Value in Dollars",y="Year")
})
}
shinyApp(ui = ui, server = server)

R: facet_wrap does not render correctly with ggplotly in Shiny app

When I do a facet_grid in ggplotly() for a Shiny App, with a large number of faceting groups, the plot is messed up. However it works correctly outside Shiny.
How can I fix this?
I suspect it is linked to the Y scale but I couldn't find the solution.
Here's a reproducible example based on diamonds example from plotly.
Comparison of Shiny vs non Shiny outputs : Comparison of facet_grid outside and within Shiny
Code
Outside Shiny:
library(ggplot2)
data(diamonds, package = "ggplot2")
# new faceting group
diamonds$rdmGroup <- as.factor(sample(LETTERS, dim(diamonds)[1], replace=TRUE))
# subset of diamonds
diamonds <- diamonds[sample(nrow(diamonds), 1000),]
ggplot(diamonds , aes_string(x = diamonds$x, y = diamonds$y, color = diamonds$x)) +
geom_point() + facet_grid(rdmGroup~.) +
guides(color=FALSE) +
labs(x = "X", y="Y")
The same code in a Shiny App:
library(shiny)
library(plotly)
library(ggplot2)
data(diamonds, package = "ggplot2")
# new faceting group
diamonds$rdmGroup <- as.factor(sample(LETTERS, dim(diamonds)[1], replace=TRUE))
# subset of diamonds
diamonds <- diamonds[sample(nrow(diamonds), 1000),]
ui <- fluidPage(
headerPanel("Diamonds Explorer"),
sidebarPanel(
sliderInput('plotHeight', 'Height of plot (in pixels)',
min = 100, max = 2000, value = 1000)
),
mainPanel(
plotlyOutput('trendPlot')
)
)
server <- function(input, output) {
output$trendPlot <- renderPlotly({
p <- ggplot(diamonds, aes_string(x = diamonds$x, y =diamonds$y, color = diamonds$x)) +
geom_point()+ facet_grid(rdmGroup~., scales = "free_y") +
labs(x = "X", y="Y")
ggplotly(p) %>%
layout(height = input$plotHeight, autosize=TRUE)
})
}
shinyApp(ui, server)
PS: I used aes_string() instead of aes() intentionally as I need it in my real app.
The first thing to note is that the problem has nothing to do with Shiny but rather your use of ggplotly. The problem can be replicated with just:
library(ggplot2)
library(plotly)
data(diamonds, package = "ggplot2")
# new faceting group
diamonds$rdmGroup <- as.factor(sample(LETTERS, dim(diamonds)[1], replace=TRUE))
# subset of diamonds
diamonds <- diamonds[sample(nrow(diamonds), 1000),]
p <- ggplot(diamonds , aes_string(x = diamonds$x, y = diamonds$y, color = diamonds$x)) +
geom_point() + facet_grid(rdmGroup~.)
ggplotly(p)
though you will need something to view the output in, which may well be shiny.
In answer to your question, the problem seems to be that you cannot have more than 25 facets. If you remove any single group from rdmGroup then the plotly output works fine e.g.
diamonds <- subset(diamonds, rdmGroup != "Q")
To update your shiny example:
library(shiny)
library(plotly)
library(ggplot2)
data(diamonds, package = "ggplot2")
# new faceting group
diamonds$rdmGroup <- as.factor(sample(LETTERS, dim(diamonds)[1], replace=TRUE))
# subset of diamonds
diamonds <- diamonds[sample(nrow(diamonds), 1000),]
diamonds <- subset(diamonds, rdmGroup != "Q")
ui <- fluidPage(
headerPanel("Diamonds Explorer"),
sidebarPanel(
sliderInput('plotHeight', 'Height of plot (in pixels)',
min = 100, max = 2000, value = 1000)
),
mainPanel(
plotlyOutput('trendPlot')
)
)
server <- function(input, output) {
output$trendPlot <- renderPlotly({
p <- ggplot(diamonds, aes_string(x = diamonds$x, y =diamonds$y, color = diamonds$x)) +
geom_point()+ facet_grid(rdmGroup~., scales = "free_y") +
labs(x = "X", y="Y")
ggplotly(p) %>%
layout(height = input$plotHeight, autosize=TRUE)
})
}
shinyApp(ui, server)
provides the following output:
A workaround could be to simply have more than one plot, splitting the dataset into groups of 25.
EDIT: I did some more research and the plot stops displaying as expected when the panel margins are too large to allow all of the plots to display. You can display all 26 by reducing the panel.spacing.y but this will only go so far depending on how many rows you need:
p <- ggplot(diamonds, aes_string(x = diamonds$x, y =diamonds$y, color = diamonds$x)) +
geom_point()+ facet_grid(rdmGroup~., scales = "free_y") +
labs(x = "X", y="Y") + theme(panel.spacing.y = unit(0.2, "lines"))

Interactive plot for group data using R

All,
In order to graph data in many groups(categories):
data(iris)
library(dplyr)
iris_new <- select(iris, -Species)
ggplot(iris, aes(x = Sepal.Length, y = Sepal.Width)) +
geom_point(data = iris_new, colour = "grey70") +
geom_point(aes(colour = Species)) +
facet_wrap(~Species)
I didn't make interactive plots before, but I would like to know a way to allow me to make the above graph interactively. For example, in stead of showing the data using facet, I would like to have a bottom-like thing or scroll down list function that I can click on to highlight the data of different groups interactively. Each time I click on a certain group name (like those used for the legend), I can see the group data are highlighted and other data are greyed out. Any ideas here? Thank you.
You can make interactive displays via shiny. See here: https://shiny.rstudio.com/
Here's code that you can run:
library(shiny)
library(dplyr)
library(ggplot2)
data(iris)
ui <- fluidPage(
selectInput('species','Species',c("setosa","versicolor","virginica")),
plotOutput("plot")
)
server <- function(input, output) {
iris_new <- select(iris, -Species)
output$plot <- renderPlot({
ggplot(iris, aes(x = Sepal.Length, y = Sepal.Width)) +
geom_point(data = iris_new, colour = "grey70") +
geom_point(data=iris[iris$Species==input$species,],aes(colour = Species))
})
}
shinyApp(ui = ui, server = server)

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