Trying to instal SPARQL in Rstudio and got this error:
ERROR: dependency ‘SPARQL’ is not available for package ‘disgenet2r’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/disgenet2r’
Warning messages:
1: package ‘SPARQL’ is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
2: In i.p(...) :
installation of package ‘/var/folders/43/7hr3j7q17tn0ns1g67l5vbq80000gn/T//Rtmptk5KoF/file2d1b24460f94/disgenet2r_0.99.2.tar.gz’ had non-zero exit status
I have a source of one R package (http://stat.snu.ac.kr/heeseok/autots). I would like to install it in R-studio, however, I got an error.
Here is my try:
install.packages("/Users/Mary/Downloads/autots_2.3.3.tar.gz", repos=NULL, type="source")
Here is the error:
ERROR: dependencies ‘fBasics’, ‘fNonlinear’, ‘fGarch’, ‘fUtilities’, ‘tsDyn’, ‘tseriesChaos’ are not available for package ‘autots’
* removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/autots’
Warning in install.packages :
installation of package ‘/Users/Mary/Downloads/autots_2.3.3.tar.gz’ had non-zero exit status
I try to install the tidyverse and tidytext package in R and it gives me the following error
the message is similar in both I would like to know what is the cause and a possible solution
ERROR: dependencies ‘hunspell’, ‘tokenizers’ are not available for package ‘tidytext’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/tidytext’
Warning in install.packages :
installation of package ‘tidytext’ had non-zero exit status
was installed before R 4.0.0: please re-install it
I have big problem to install tm package in R
install.packages("tm")
Warning in install.packages :
package ‘tm’ is not available (for R version 3.5.2)
Warning in install.packages :
unable to access index for repository https://cran.rstudio.com/bin/windows/contrib/3.5:
cannot open URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/PACKAGES'
I just installed R using anaconda, and I am following this tutorial:
https://www.analyticsvidhya.com/blog/2016/03/tutorial-powerful-packages-imputing-missing-values/
I learned that I need to install some package by using:
if(!require(Hmisc)) install.packages("Hmisc",repos = "http://cran.us.r-project.org")
There are some warning message i am not sure whether it means successful or not:
Loading required package: Hmisc
Warning message:
In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called 'Hmisc'also installing the dependencies 'survival', 'ggplot2'
Warning message:
In install.packages("Hmisc", repos = "http://cran.us.r-project.org"): installation of package 'survival' had non-zero exit status
Warning message:
In install.packages("Hmisc", repos = "http://cran.us.r-project.org"): installation of package 'ggplot2' had non-zero exit status
Warning message:
In install.packages("Hmisc", repos = "http://cran.us.r-project.org"): installation of package 'Hmisc' had non-zero exit status
The downloaded source packages are in
'/tmp/Rtmpcf6rZ9/downloaded_packages'
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Then I tried to load the library with
library(Hmisc)
But I got the error,
Error in library(Hmisc): there is no package called 'Hmisc'
Does anyone know what might has happened? Thanks.
Edit:
I am suggested to try a few more ways, but they all have various error:
install.packages("Hmisc")
Error in contrib.url(repos, type): trying to use CRAN without setting a mirror
If I do:
install.packages("Hmisc",repos = "http://cran.us.r-project.org")
I got:
also installing the dependencies 'survival', 'ggplot2'
Warning message:
In install.packages("Hmisc", repos = "http://cran.us.r-project.org"): installation of package 'survival' had non-zero exit status
Warning message:
In install.packages("Hmisc", repos = "http://cran.us.r-project.org"): installation of package 'ggplot2' had non-zero exit status
Warning message:
In install.packages("Hmisc", repos = "http://cran.us.r-project.org"): installation of package 'Hmisc' had non-zero exit status
The downloaded source packages are in
'/tmp/Rtmpcf6rZ9/downloaded_packages'
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
I am suggested not to use Anaconda R, but because I mostly use rpy2 and jupiter notebook the most. I think using the Anaconda R may be the most straight forward method to get my jupiter notebook and python to work seamlessly with R.
I had a similar issue, solved it by installing "acepack" directly install.packages('acepack')
This is mysterious, regardless. I do an update of all packages in Conda. Then, I install Rstudio using anaconda. Then the error does not exist anymore...