A few weeks ago, someone here helped me immensely get a list of all the links in the Notable Names database. i was able to run this code and get the following output
library(purrr)
library(rvest)
url_base <- "https://www.nndb.com/lists/494/000063305/"
## Gets A-Z links
all_surname_urls <- read_html(url_base) %>%
html_nodes(".newslink") %>%
html_attrs() %>%
map(pluck(1, 1))
all_ppl_urls <- map(
all_surname_urls,
function(x) read_html(x) %>%
html_nodes("a") %>%
html_attrs() %>%
map(pluck(1, 1))
) %>%
unlist()
all_ppl_urls <- setdiff(
all_ppl_urls[!duplicated(all_ppl_urls)],
c(all_surname_urls, "http://www.nndb.com/")
)
all_ppl_urls[1] %>%
read_html() %>%
html_nodes("p") %>%
html_text()
# [1] "AKA Lee William Aaker"
# [2] "Born: 25-Sep-1943Birthplace: Los Angeles, CA"
# [3] "Gender: MaleRace or Ethnicity: WhiteOccupation: Actor"
# [4] "Nationality: United StatesExecutive summary: The Adventures of Rin Tin Tin"
# ...
My original intention was to get a dataframe where i'd get the name of the person, their gender, race, occupation and nationality into a single dataframe.
A lot of the questions I saw here and on other sites was helpful if your data came in an html table and that's not the case with the notable names database. I know a loop needs to be involved for all 40K sites but after a weekend of searching for answers i can't seems to find out how. Can someone assist?
Edited to add
I tried following some of the rules here but this request was a bit more complex
## I tried to run list <- all_ppl_urls%>% map(read_html) but that was taking a LONG time so I decided to just get the first ten links for the sake of showing my example:
example <- head(all_ppl_urls, 10)
list <- example %>% map(read_html)
test <-list %>% map_df(~{
text_1 <- html_nodes(.x, 'p , b') %>% html_text
and i got this error:
Error:
In addition: Warning message:
closing unused connection 3 (http://www.nndb.com/people/965/000279128/)
Here you have a way to get data looking at each of your html files. This is just an approach that gets some good results...but... you must notice that those gsub functions should be edited in order to get better results. This happens because that list of urls or, lets say, that webpage, is not homogenized in how data are displayed. This is something you have to deal with. For instance, here are just two screenshots where you can find those differences in web presentation:
Anyway, you can manage this adapting this code:
library(purrr)
library(rvest)
[...] #here is your data
all_ppl_urls[100] %>%
read_html() %>%
html_nodes("p") %>%
html_text()
# [3] "Gender: MaleReligion: Eastern OrthodoxRace or Ethnicity: Middle EasternSexual orientation: StraightOccupation: PoliticianParty Affiliation: Republican"
#-----------------------------------------------------------------------------------------------
# NEW WAY
toString(read_html(all_ppl_urls[100])) #get example of how html looks...
#><b>AKA</b> Edmund Spencer Abraham</p>\n<p><b>Born:</b> 12-Jun-1952<br><b>Birthplace:</b> East Lansing, MI<br></p>\n<p><b>Gender:</b> Male<br><b>
#1. remove NA urls (avoid problems later on)
urls <- all_ppl_urls[!is.na(all_ppl_urls)]
length(all_ppl_urls)
length(urls)
#function that creates a list with your data
GetLife <- function (htmlurl) {
htmltext <- toString(read_html(htmlurl))
name <- gsub('^.*AKA</b>\\s*|\\s*</p>\n.*$', '', htmltext)
gender <- gsub('^.*Gender:</b>\\s*|\\s*<br>.*$', '', htmltext)
race <- gsub('^.*Race or Ethnicity:</b>\\s*|\\s*<br>.*$', '', htmltext)
occupation <- gsub('^.*Occupation:</b>\\s*|\\s*<br>.*$|\\s*</a>.*$|\\s*</p>.*$', '', htmltext)
#as occupation seems to have to many hyperlinks we are making another step
occupation <- gsub("<[^>]+>", "",occupation)
nationality <- gsub('^.*Nationality:</b>\\s*|\\s*<br>.*$', '', htmltext)
res <- c(ifelse(nchar(name)>100, NA, name), #function that cleans weird results >100 chars
ifelse(nchar(gender)>100, NA, gender),
ifelse(nchar(race)>100, NA, race),
ifelse(nchar(occupation)>100, NA, occupation),
ifelse(nchar(nationality)>100, NA, nationality),
htmlurl)
return(res)
}
emptydf <- data.frame(matrix(ncol=6, nrow=0)) #creaty empty data frame
colnames(emptydf) <- c("name","gender","race","occupation","nationality","url") #set names in empty data frame
urls <- urls[2020:2030] #sample some of the urls
for (i in 1:length(urls)){
emptydf[i,] <- GetLife(urls[i])
}
emptydf
Here is an example of those 10 urls analized:
name gender race occupation nationality url
1 <NA> Male White Business United States http://www.nndb.com/people/214/000128827/
2 Mark Alexander Ballas, Jr. Male White Dancer United States http://www.nndb.com/people/162/000346121/
3 Thomas Cass Ballenger Male White Politician United States http://www.nndb.com/people/354/000032258/
4 Severiano Ballesteros Sota Male Hispanic Golf Spain http://www.nndb.com/people/778/000116430/
5 Richard Achilles Ballinger Male White Government United States http://www.nndb.com/people/511/000168007/
6 Steven Anthony Ballmer Male White Business United States http://www.nndb.com/people/644/000022578/
7 Edward Michael Balls Male White Politician England http://www.nndb.com/people/846/000141423/
8 <NA> Male White Judge United States http://www.nndb.com/people/533/000168029/
9 <NA> Male Asian Engineer England http://www.nndb.com/people/100/000123728/
10 Michael A. Balmuth Male White Business United States http://www.nndb.com/people/635/000175110/
11 Aristotle N. Balogh Male White Business United States http://www.nndb.com/people/311/000172792/
Update
Included an error routine for profiles which could not be parsed properly. If there is any error you will get an NA row (even if some info could be parsed properly - this is due to the fact that we read all fields at once and we are relying that all fields could be read).
Maybe you want to further develop that code to return partial information? You could do this by reading the fields one after another (instead of once) and if there is an error return NA for this field and not the entire row. This has the downside, however, that the code need to parse the doc not only once per profile but several times.
Here's a function which relies on Xpath to select the relevant fields:
library(rvest)
library(glue)
library(tibble)
library(dplyr)
library(purrr)
scrape_profile <- function(url) {
fields <- c("Gender:", "Race or Ethnicity:", "Occupation:", "Nationality:")
filter <- glue("contains(text(), '{fields}')") %>%
paste0(collapse = " or ")
xp_string <- glue("//b[{filter}]/following::text()[normalize-space()!=''][1]")
tryCatch({
doc <- read_html(url)
name <- doc %>%
html_node(xpath = "(//b/text())[1]") %>%
as.character()
doc %>%
html_nodes(xpath = xp_string) %>%
as.character() %>%
gsub("^\\s|\\s$", "", .) %>%
as.list() %>%
setNames(c("Gender", "Race", "Occupation", "Nationality")) %>%
as_tibble() %>%
mutate(Name = name) %>%
select(Name, everything())
}, error = function(err) {
message(glue("Profile <{url}> could not be parsed properly."))
tibble(Name = ifelse(exists("name"), name, NA), Gender = NA,
Race = NA, Occupation = NA,
Nationality = NA)
})
}
All you have to do now is to apply scrape_profile to all of your profile urls:
map_dfr(all_ppl_urls[1:5], scrape_profile)
# # A tibble: 5 x 5
# Name Gender Race Occupation Nationality
# <chr> <chr> <chr> <chr> <chr>
# 1 Lee Aaker Male White Actor United States
# 2 Aaliyah Female Black Singer United States
# 3 Alvar Aalto Male White Architect Finland
# 4 Willie Aames Male White Actor United States
# 5 Kjetil André Aamodt Male White Skier Norway
Explanation
Identify Structure of Website: When looking at the source code of the profile site, you see that all relevant information but the name follows a label in bold (i.e. <b> tags), sometimes there is also a link tag (<a>).
Construct selector: With this information we now can construct either a css or an XPath selector. However, since we want to select text nodes, XPath seems to be the only(?) option: //b[contains(text(), "Gender:")]/following::text()[normalize-space()!=' '][1] selects
the first non empty text node ::text()[normalize-space()!=' '][1] which is
a sibling (/following) of
a <b> tag (//b) which
contains the text Gender: ([contains(text(), "Gender:")])
Multiple Select: since all tags are built in the same way, we can construct an Xpath which matches more than one element avoiding explicit loops. This we do by pasting several contains(.) statements together separated by or
Further Formatting: Finally we remove whitespaces and return it in a tibble
Name Field: Last step is to extract the name, which is basically the first bold (<b>) text
Related
I am performing webscraping on a site and have been able to get basic data, but I now need to collect data from a more complicated part of the page.
I am using rvest to pull data from the AAA gas prices website:
https://gasprices.aaa.com/
I am now trying to pull county-level data, which is only displayed on the map (if you hover your cursor over an individual county. I need to get the county gas prices for individual counties in different states. For example, if you click on Maine, to go to the Maine page (https://gasprices.aaa.com/?state=ME), I need to webscrape the price for Aroostook (the northernmost county on the map).
I have been able to use rvest to extract the data for the metro areas (lower on the page), using html_nodes and the node "td". However, the code for the map is more complex. Instead of the simple "td" node, the developer tools (in Chrome) gives <td class="fm-tooltip-comment">$4.928</td on the line with the price ($4.928 is the current price in Aroostook, as of the date of this post). I cannot seem to identify that with the rvest package to extract it.
I have read that the class can be used, or others have proposed using the css code to designate it within rvest, but I am unfamiliar with how to do so. Pulling the metro-area numbers was straightforward, however the county-level prices embedded within the map do not seem as accessible.
Is there a way to extract this county-level data so that I can webscrape in R? And, can this then be repeatable for all the counties/states from which I must select? Do I need the css code, and if so how do I access it/write it properly for rvest to use?
It looks like the information you are looking for is store in the "index.php" file that gets downloaded when the web page loads.
The current link for Maine is "https://gasprices.aaa.com/index.php?premiumhtml5map_js_data=true&map_id=21&r=89346&ver=5.9.3".
I am not sure what the r=89346 value is for, maybe a timestamp, tracking id, temporary token (to prevent web scraping) etc. I suspect this URL will change thus you may need to use the developer tools on the browser to obtain the current url.
Also, map_id refers to state but I don't know the rational, Florida is 1, NC is 35 and Maine is 21.
Download this file, then extract the JSON data and convert. The data starts with a {"st1": and ends with }}.
library(dplyr)
#read the index_php file and turn it into character string
index_php <-readLines("https://gasprices.aaa.com/index.php?premiumhtml5map_js_data=true&map_id=21&r=19770&ver=5.9.3")
index_php <- paste(index_php, collapse = " ")
#extract out the correct JSON data part and convert
jsondata <- stringr::str_extract(index_php, "\\{\"st1\":.+?\\}\\}")
data<-jsonlite::fromJSON(jsondata)
#create a data frame with the results
answer <- bind_rows(data)
id name shortname link comment image color_map color_map_over
<int> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
1 1 Androscoggin "" "" $4.964 "" #ca3338 #ca3338
2 2 Aroostook "" "" $4.928 "" #dd7a7a #dd7a7a
3 3 Cumberland "" "" $4.944 "" #ca3338 #ca3338
4 4 Franklin "" "" $4.936 "" #dd7a7a #dd7a7a
5 5 Hancock "" "" $4.900 "" #01b5da #01b5da
6 6 Kennebec "" "" $4.955 "" #ca3338 #ca3338
There are some extra columns which need removal, I leave it as an exercise for the reader.
So, you can gather the state info, including state level prices from the initial US page. You can also, from there, gather the urls for each state page. Make a request to each of those pages, and store the returned html. You can then, depending on whether the county data is in a php file, either extract the php file links, request that file and process out the info you want, or, in the case of no php file, extract the necessary data from the html already stored from the state requests.
Below extracts all the prices for all states and counties. There is a state DataFrame and a state with counties DataFrame.
library(tidyverse)
library(rvest)
get_data <- function(state, url) {
# extract county and price data from php files. Pass in state abbreviation and php file URI.
s <- read_html(url) %>%
html_text() %>%
str_match("map_data\\s+:\\s+(.*\\}),") %>%
.[, 2]
return(
tibble(
state = state,
county = s %>% str_match_all(',"name":"(.*?)"') %>% .[[1]] %>% .[, 2],
price = s %>% str_match_all(',"comment":"(.*?)"') %>% .[[1]] %>% .[, 2]
)
)
}
start_url <- "https://gasprices.aaa.com/?state=US"
page <- read_html(start_url)
# get state price info and urls for state pages
data_strings <- page %>%
html_text() %>%
stringr::str_match('placestxt = (".*")') %>%
.[, 2] %>%
str_replace_all('\\"', "") %>%
str_split(";")
df_state <- data.frame(subset(data_strings[[1]], lapply(data_strings, function(x) {
x != ""
})[[1]]) %>% map(., ~ str_split(.x, ",")) %>% unlist(recursive = F)) %>%
transpose() %>%
.[c(1:4)] %>%
set_names("abbr", "state", "price", "url")
state_data <- lapply(df_state$url, read_html)
# find the php file links
df_state$data_url <- lapply(state_data, function(item) {
item %>%
html_element("[src*=js_data]") %>%
html_attr("src")
})
# separate out dataframe according to whether county data is in php file or in previously stored html
no_valid_data_url <- df_state %>% filter(is.na(data_url))
has_valid_data_url <- df_state %>% filter(!is.na(data_url))
# grab the data for states where there are php files with county info
df_state_county <- map2_dfr(has_valid_data_url$state, has_valid_data_url$data_url, get_data)
# add in missing info i.e. # handle cases where data_url is NA e.g. https://gasprices.aaa.com/?state=DC
if (nrow(no_valid_data_url) > 0) {
html_to_use <- state_data[match(no_valid_data_url$abbr, df_state$abbr)]
df_state_county_no_data_url <- map_dfr(html_to_use, function(html) {
state_node <- html %>% html_element(".selected")
state_text <- state_node %>% html_text(trim = T)
return(
data.frame(
state = state_text,
county = state_text,
price = html %>% html_element('td:contains("Current Avg.") + td') %>% html_text()
)
)
})
df_state_county <- rbind(df_state_county, df_state_county_no_data_url)
}
head(df_state, 2)
head(df_state_county, 2)
I am using rvest to (try to) scrape all the author affiliation data from a database of academic publications called RePEc. I have the authors' short IDs (author_reg), which I'm using to scrape affiliation data. However, I have several columns indicating multiple authors (each of which I need the affiliation data for). When there aren't multiple authors, the cell has an NA value. Some of the columns are mostly NA values so how do I alter my code so it skips the NA values but doesn't delete them?
Here is the code I'm using:
library(rvest)
library(purrr)
df$author_reg <- c("paa6","paa2","paa1", "paa8", "pve266", "pya500", "NA", "NA")
http1 <- "https://ideas.repec.org/e/"
http2 <- "https://ideas.repec.org/f/"
df$affiliation_author_1 <- sapply(df$author_reg_1, function(x) {
links = c(paste0(http1, x, ".html"),paste0(http2, x, ".html"))
# here we try both links and store under attempts
attempts = links %>% map(function(i){
try(read_html(i) %>% html_nodes("#affiliation h3") %>% html_text())
})
# the good ones will have "character" class, the failed ones, try-error
gdlink = which(sapply(attempts,class) != "try-error")
if(length(gdlink)>0){
return(attempts[[gdlink[1]]])
}
else{
return("True 404 error")
}
})
Thanks in advance for your help!
As far as I see the target links, you can try the following way. First, you want to scrape all links from https://ideas.repec.org/e/ and create all links. Then, check if each link exists or not. (There are about 26000 links with this URL, and I do not have time to check all. So I just used 100 URLs in the following demonstration.) Extract all existing links.
library(rvest)
library(httr)
library(tidyverse)
# Get all possible links from this webpage. There are 26665 links.
read_html("https://ideas.repec.org/e/") %>%
html_nodes("td") %>%
html_nodes("a") %>%
html_attr("href") %>%
.[grepl(x = ., pattern = "html")] -> x
# Create complete URLs.
mylinks1 <- paste("https://ideas.repec.org/e/", x, sep = "")
# For this demonstration I created a subset.
mylinks_samples <- mylinks1[1:100]
# Check if each URL exists or not. If FALSE, a link exists.
foo <- sapply(mylinks_sample, http_error)
# Using the logical vector, foo, extract existing links.
urls <- mylinks_samples[!foo]
Then, for each link, I tried to extract affiliation information. There are several spots with h3. So I tried to specifically target h3 that stays in xpath containing id = "affiliation". If there is no affiliation information, R returns character(0). When enframe() is applied, these elements are removed. For instance, pab127 does not have any affiliation information, so there is no entry for this link.
lapply(urls, function(x){
read_html(x, encoding = "UTF-8") %>%
html_nodes(xpath = '//*[#id="affiliation"]') %>%
html_nodes("h3") %>%
html_text() %>%
trimws() -> foo
return(foo)}) -> mylist
Then, I assigned names to mylist with the links and created a data frame.
names(mylist) <- sub(x = basename(urls), pattern = ".html", replacement = "")
enframe(mylist) %>%
unnest(value)
name value
<chr> <chr>
1 paa1 "(80%) Institutt for ØkonomiUniversitetet i Bergen"
2 paa1 "(20%) Gruppe for trygdeøkonomiInstitutt for ØkonomiUniversitetet i Bergen"
3 paa2 "Department of EconomicsCollege of BusinessUniversity of Wyoming"
4 paa6 "Statistisk SentralbyråGovernment of Norway"
5 paa8 "Centraal Planbureau (CPB)Government of the Netherlands"
6 paa9 "(79%) Economic StudiesBrookings Institution"
7 paa9 "(21%) Brookings Institution"
8 paa10 "Helseøkonomisk Forskningsprogram (HERO) (Health Economics Research Programme)\nUniversitetet i Oslo (Unive~
9 paa10 "Institutt for Helseledelse og Helseökonomi (Institute of Health Management and Health Economics)\nUniversi~
10 paa11 "\"Carlo F. Dondena\" Centre for Research on Social Dynamics (DONDENA)\nUniversità Commerciale Luigi Boccon~
Hello Guys this is my code:
library(rvest)
url_imb <- 'https://www.imdb.com/search/title/?count=100&release_date=2016,2016&title_type=feature'
web_page<-read_html(url_imb)
html_text(html_nodes(web_page,xpath='//p[#class=""]//a'))
What I need is to extract the Directors Names and put then in a list respecting each movie. The problem is how to extract the right director? Because some movies have more than one directors.
How can I do this and put them in a list?
EDIT: Its look like that the answer is on how I can use "adv_li_dr_0". Right?
Directors have href tag such as adv_li_dr_0 adv_li_dr_1 and so on. We can use that to differentiate actors and directors. It is easy to get all the directors on the page using that information however it is tricky to map movies and directors. One way is to get all the nodes with complete movie information and from each node we extract movie name and directors name and create a tibble.
library(tidyverse)
library(rvest)
url_imb <- 'https://www.imdb.com/search/title/?count=100&release_date=2016,2016&title_type=feature'
web_page<-read_html(url_imb)
all_movies <- web_page %>% html_nodes("div.lister-item-content")
map_df(all_movies,~{
all_href_tags = .x %>% html_nodes("a")
directors_name = all_href_tags[all_href_tags %>%
html_attr("href") %>%
grep("adv_li_dr", .)] %>%
html_text()
movie_name = .x %>% html_nodes("h3 a") %>% html_text()
tibble(directors_name, movie_name)
})
# A tibble: 116 x 2
# directors_name movie_name
# <chr> <chr>
# 1 David Ayer Suicide Squad
# 2 Babak Najafi London Has Fallen
# 3 Bryan Singer X-Men: Apocalypse
# 4 Tim Miller Deadpool
# 5 M. Night Shyamalan Split
# 6 Gareth Edwards Rogue One
# 7 David Yates Fantastic Beasts and Where to Find Them
# 8 Lone Scherfig Their Finest
# 9 Mel Gibson Hacksaw Ridge
#10 Damien Chazelle La La Land
# … with 106 more rows
all_movies is a basically list of all movies available on the page (100). Using map_df we loop through each one of them and create a tibble with two columns, one with movie name and other directors name. To get director's name we get text of all the anchor (<a>) tags whose href attribute has pattern "adv_li_dr". Getting movie name is straight forward.
So for movie with one director (all_movies[[1]]) it will return
# directors_name movie_name
# <chr> <chr>
#1 David Ayer Suicide Squad
and movie with two directors (all_movies[[11]]) it will return
# directors_name movie_name
# <chr> <chr>
#1 Chris Renaud The Secret Life of Pets
#2 Yarrow Cheney The Secret Life of Pets
So similarly, we get 100 such tibbles which we bind together into one dataframe.
To get directors only with "adv_li_dr_0" tag, we can do
all_tags <- web_page %>% html_nodes("a")
all_tags[all_tags %>%
html_attr("href") %>%
grep("adv_li_dr_0", .)] %>%
html_text()
but adv_li_dr_0 will only get 1st director of the movie and will miss if there are more than 1 directors. To get all the directors, we can do
all_tags[all_tags %>%
html_attr("href") %>%
grep("adv_li_dr", .)] %>%
html_text()
I'm trying to get the
Gender
Race or Ethnicity
Sexual orientation
Occupation
Nationality
from each site listed here: https://www.nndb.com/lists/494/000063305/
Here's an individual site so viewers can see the single page.
I'm trying to model my R code after this site but it's difficult because on the individual sites there aren't headings for Gender, for example. Can someone assist?
library(purrr)
library(rvest)
url_base <- "https://www.nndb.com/lists/494/000063305/"
b_dataset <- map_df(1:91, function(i) {
page <- read_html(sprintf(url_base, i))
data.frame(ICOname = html_text(html_nodes(page, ".name")))
})
I'll take you halfway there: it's not too difficult to figure out from here.
library(purrr)
library(rvest)
url_base <- "https://www.nndb.com/lists/494/000063305/"
First, the following will generate a list of A-Z surname list URLs, and then consequently each person's profile URLs.
## Gets A-Z links
all_surname_urls <- read_html(url_base) %>%
html_nodes(".newslink") %>%
html_attrs() %>%
map(pluck(1, 1))
all_ppl_urls <- map(
all_surname_urls,
function(x) read_html(x) %>%
html_nodes("a") %>%
html_attrs() %>%
map(pluck(1, 1))
) %>%
unlist()
all_ppl_urls <- setdiff(
all_ppl_urls[!duplicated(all_ppl_urls)],
c(all_surname_urls, "http://www.nndb.com/")
)
You are correct---there are no separate headings for gender or any other, really. You'll just have to use tools such as SelectorGadget to see what elements contain what you need. In this case it's simply p.
all_ppl_urls[1] %>%
read_html() %>%
html_nodes("p") %>%
html_text()
The output will be
[1] "AKA Lee William Aaker"
[2] "Born: 25-Sep-1943Birthplace: Los Angeles, CA"
[3] "Gender: MaleRace or Ethnicity: WhiteOccupation: Actor"
[4] "Nationality: United StatesExecutive summary: The Adventures of Rin Tin Tin"
...
Although the output is not clean, things rarely are when webscraping---this is actually relatively easier one. You can use series of grepl and map to subset the contents that you need, and make a dataframe out of them.
My question is in regards to R being able to read a URL link. The example that I use is solely for illustration purposes. Say that I have the following webpage that I want to read (chosen at random);
https://www.mcdb.ucla.edu/faculty
It has a list of professor names with a URL link, I am trying to build a script which can read a webpage similar to this for instance and access each URL link and make a search for certain keywords regarding their publications.
I currently have my script to scan an individual website for certain keywords which I post below.
library(rvest)
library(dplyr)
library(tidyverse)
library(stringr)
prof <- readLines("https://www.mcdb.ucla.edu/faculty/jsadams")
library(dplyr)
text_df <- data_frame(text = prof)
text_df <- as.data.frame.table(text_df)
keywords <- c("nonskeletal", "antimicrobial response")
text_df %>%
filter(str_detect(text, keywords[1]) | str_detect(text, keywords[2]))
This should return publications 1, 2 and 4 under the section "Selected Publications" on the professors webpage.
Now I am trying to get R to read each professors page from the faculty link (https://www.mcdb.ucla.edu/faculty) and see if each professor has publications with the keywords listed above.
Read: https://www.mcdb.ucla.edu/faculty
Access each link and read each faculty member page:
Return if value "keywords" = TRUE:
List professors publications or text that has the "keywords" in:
I have already been able to do this for each individual page but I would perhaps prefer a loop or function so I do not have to copy and paste each professors page URL each time.
Just a slight disclaimer - I have no connection with the UCLA or the professor on that website, the professor URL I chose just so happened to be the first professor listed on the faculty of professors webpage.
I'd approach this as follows. This is "quick and dirty" code, but hopefully provides a basis for something better.
First, you need the correct selectors to get the faculty names and the links to their pages. Create a data frame with that information:
library(dplyr)
library(rvest)
library(tidytext)
page <- read_html("https://www.mcdb.ucla.edu/faculty")
table1 <- page %>%
html_nodes(xpath = "///table[1]/tr/td/a")
names <- table1 %>%
html_text() %>%
unlist(use.names = FALSE)
links <- table1 %>%
html_attrs() %>%
unlist(use.names = FALSE)
data1 <- data.frame(name = names, href = links)
head(data1)
name href
1 John Adams /faculty/jsadams
2 Utpal Banerjee /faculty/banerjee
3 Siobhan Braybrook /faculty/siobhanb
4 Jau-Nian Chen /faculty/chenjn
5 Amander Clark /faculty/clarka
6 Daniel Cohn /faculty/dcohn
Next, you need a function that takes the values in the href column, fetches the staff page and looks for keywords. I took a different approach to you, using tidytext to break all of the publications down into individual words, then counting rows where any of the keywords occur. This means that "antimicrobial response" has to be two separate words, so you may want to do that differently.
The function returns a count which is > 0 if any of the keywords were present.
get_pubs <- function(href) {
page <- read_html(paste0("https://www.mcdb.ucla.edu", href))
pubs <- data.frame(text = page %>%
html_nodes("div.mcdb-faculty-pubs p") %>%
html_text(),
stringsAsFactors = FALSE)
pubs <- pubs %>%
unnest_tokens(word, text)
pubs %>%
filter(word %in% c("nonskeletal", "antimicrobial", "response")) %>%
nrow()
}
Now you can apply the function to each href:
data1 <- data1 %>%
mutate(count = sapply(href, function(x) get_pubs(x)))
Which faculty had at least one keyword in their publications?
data1 %>%
filter(count > 0)
name href count
1 John Adams /faculty/jsadams 9
2 Arjun Deb /faculty/adeb 1
3 Tracy Johnson /faculty/tljohnson 1
4 Chentao Lin /faculty/clin 1
5 Jeffrey Long /faculty/jeffalong 1
6 Matteo Pellegrini /faculty/matteop 1