I was able to use ZuluFX 8 with javapackager on Windows. However, on a Mac I get this error:
Bundler Mac Application Image skipped because of a configuration problem: Cannot determine which JRE/JDK exists in the specified runtime directory.
Advice to fix: Point the runtime directory to one of the JDK/JRE root, the Contents/Home directory of that root, or the Contents/Home/jre directory of the JDK.
It's pretty easy to just move the package into Contents/Home but I doubt that will work as it seems there is no JRE bundled with the Mac version of ZuluFX 8. Is this something that can be worked around?
It's pretty easy to just move the package into Contents/Home but I doubt that will work as it seems there is no JRE bundled with the Mac version of ZuluFX 8.
From what I'm seeing, I'm not sure that's correct. The ZuluFx 8 archive for Mac contains a jre directory. I extracted the archive to ~/zuluFX and from there created the Contents/Home directory as required by MacOS and added a symbolic link to said jre directory there. I then set $JAVA_HOME accordingly:
$ pwd
/Users/cody/zuluFX
$ mkdir -p Contents/Home
$ ln -s ../../jre .
$ export JAVA_HOME=~/zuluFX
Then I utilized a simple javapackager example on github to test its usage (I have no other JREs/JDKs installed on this box). The example app simply dumps Java properties and environment variables in a TextArea.
I had to modify the 3build script in the example to comment out its attempt to re-set $JAVA_HOME, but otherwise, it builds successfully, with the following javapackager command:
javapackager \
-deploy -Bruntime=${JAVA_HOME} \
-native image \
-srcdir . \
-srcfiles MacJavaPropertiesApp.jar \
-outdir release \
-outfile ${APP_DIR_NAME} \
-appclass MacJavaPropertiesApp \
-name "MacJavaProperties" \
-title "MacJavaProperties" \
-nosign \
-v
When I launch the resulting app, it reports the usage of the azul/zulu jre as expected:
Related
Java JDK is installed, everything works great, also maven works great.
I followed the instructions from the site, downloaded the bat file, set the path and at the command prompt started the installation with the command lein self-install.
what i got in response is downloading leiningen now ....
after a while, C: \ windows \ system32> appeared below that line and it stays that way for several hours.
What more should I do?
The command line normally uses a prompt like > or similar to indicate it is waiting for a command. Then you type something followed by the <return> key:
> lein --version
Leiningen 2.9.8 on Java 1.8.0_322 OpenJDK 64-Bit Server VM
>
Here I typed lein --version, then <ret>, and the computer responded with a 1-liner about the version of Leiningen and Java that are installed. Then it displayed the prompt again, waiting for the next command.
You can use the cd (change directory) command to move around. With no prompt it will send you back to your "home" directory. See docs for the BASH or ZSH shell.
For Windows, I highly recommend installing the BASH Shell and git from this site:
https://gitforwindows.org/
IMHO the bash shell is greatly superior to the built-in Windows shell from CMD.EXE
I can't load packages in R because the file libpq.5.dylib is not in /usr/lib/libpq.5.dylib. It is in /usr/local/Cellar/libpq/13.0/lib/libpq.5.dylib
I tried this line: sudo ln -s /usr/local/Cellar/libpq/13.0/lib/libpq.5.dylib /usr/lib/libpq.5.dylib but I get this response: ln: /usr/lib/libpq.5.dylib: Operation not permitted
What can I do to get the file in /usr/lib/libpq.5.dylib without causing issues? This solution suggests that I may face problems down the line so I don't understand what to do.
You really don't want it in /usr/lib. Apple declared that as off-limits, and on newer macOS versions it lives on a read-only volume. Unless you're willing to go into recovery mode and manually tamper with the volume (and possibly repeat that on future OS updates), this is not the way to go.
Instead, let's address the core issue:
Dynamic libraries on macOS embed their own install path inside the binary, and the linker copies that into binaries linking against them. This information can be changed with install_name_tool (see man install_name_tool).
Examine the install name of the dylib:
otool -l /usr/local/Cellar/libpq/13.0/lib/libpq.5.dylib | fgrep -A2 LC_ID_DYLIB
If the printed path already points to the dylib itself (or a path that is symlinked to it), use this path as [new_path] below, and skip step 2.
If the dylib's install name does not point back to itself, run this:
sudo install_name_tool -id /usr/local/Cellar/libpq/13.0/lib/libpq.5.dylib /usr/local/Cellar/libpq/13.0/lib/libpq.5.dylib
And use /usr/local/Cellar/libpq/13.0/lib/libpq.5.dylib for [new_path] below.
For binaries that link against the dylib, run:
sudo install_name_tool -change /usr/lib/libpq.5.dylib [new_path] [path_to_binary]
I had the same issue building a container through docker for API use : RPostgres was installed but the library couldn't load, same error message.
Since I had installed Postgres on my machine, I figure the problem was worked around therefore I had no such message on local ; but here's how I solved this in my dockerfile, 100% verified on a machine with nothing related to R installed :
RUN apt-get update && apt-get install libpq5 -y
So executing apt-get update && apt-get install libpq5 -y on your terminal should do the trick. Light and efficient.
It tried to load libpq.5.dylib from the symlink /opt/homebrew/opt/postgresql/lib/libpq.5.dylib but could not find the file, so you need to update it:
# TODO: get this from the error, after "Library not loaded:"
SYMLINK_PATH="/opt/homebrew/opt/postgresql/lib/libpq.5.dylib"
# TODO: find this in your machine. The version maybe different than mine
DESTINATION_PATH="/opt/homebrew/opt/postgresql/lib/postgresql#14/libpq.5.dylib"
sudo mv $SYMLINK_PATH $SYMLINK_PATH.old
sudo ln -s $DESTINATION_PATH $SYMLINK_PATH
I am trying to create a completely portable version of R for Mac that I can send to users with no R on their system and they can essentially double click a command file and it launches a Shiny application. I'll need to be able to install packages including some built from source (and some from GitHub).
I am using the script from this GitHub repository (https://github.com/dirkschumacher/r-shiny-electron/blob/master/get-r-mac.sh) as a starting point (it's also pasted below), creating a version of R, but (A) I find that when I try to launch R it gives me an error not finding etc/ldpaths and (B) when I try to launch Rscript it runs my system version -- I run `Rscript -e 'print(R.version)' and it prints out 4.0 which is my system version of R rather than the version 3.5.1 which the shell script has downloaded and processed.
I've experimented with editing the "R" executable and altering R_HOME and R_HOME_DIR but it still runs into issues when I try to install packages to the 3.5.1 directory.
Can anyone provide some guidance?
(By the way docker is not an option, this needs to be as simple as possible end-users with limited technical skills. So having them install docker etc won't be an option)
#!/usr/bin/env bash
set -e
# Download and extract the main Mac Resources directory
# Requires xar and cpio, both installed in the Dockerfile
mkdir -p r-mac
curl -o r-mac/latest_r.pkg \
https://cloud.r-project.org/bin/macosx/R-3.5.1.pkg
cd r-mac
xar -xf latest_r.pkg
rm -r r-1.pkg Resources tcltk8.pkg texinfo5.pkg Distribution latest_r.pkg
cat r.pkg/Payload | gunzip -dc | cpio -i
mv R.framework/Versions/Current/Resources/* .
rm -r r.pkg R.framework
# Patch the main R script
sed -i.bak '/^R_HOME_DIR=/d' bin/R
sed -i.bak 's;/Library/Frameworks/R.framework/Resources;${R_HOME};g' \
bin/R
chmod +x bin/R
rm -f bin/R.bak
# Remove unneccessary files TODO: What else
rm -r doc tests
rm -r lib/*.dSYM
Happy to help you get this working for your shiny app. You can use this github repo for Electron wrapping R/Shiny... just clone, and replace the app.R (for your other packages you need to install them in the local R folder after cloning and then running R from the command line out of the R-Portable-Mac/bin folder...
Try it with the Hello World app.R that is included first
https://github.com/ColumbusCollaboratory/electron-quick-start
And, then installing your packages in the local R-Portable-Mac folder runtime. Included packages by default...
https://github.com/ColumbusCollaboratory/electron-quick-start/tree/master/R-Portable-Mac/library
Your packages will show up here after install.packages() from the command line using the local R-Mac-Portable runtime.
We have been working on a R Addin for this also...
https://github.com/ColumbusCollaboratory/photon
But, note the add-in is still a work in progress and doesn't work with compiled R packages; still have to go into the local R folder and runtime on the command line and install the packages directly into the local R folder libpath as discussed above.
Give it a try and let us know through Github issues if you have any questions and issues. And, if you've already posted out there, sorry we haven't responded as of yet. Would love to communicate through the photon Add-In for this to get it working with compiling packages (into the libPath)--if you have the time to help. Thanks!
I have Qt Creator and Qt 5.5 installed.
QT_QPA_PLATFORM_PLUGIN_PATH = C:\Qt\5.5\msvc2013\plugins
If I disable the environment var, I do get an error when I launch an application from QtC. So the variable seems to be required.
My problem is:
When I run other Qt based applications (i.e. Teamspeak or such), those fail, I always have to disable (delete) QT_QPA_PLATFORM_PLUGIN_PATH first
When I use KITS in QtC and switch between Qt versions (i.e. 5.4, 5.6) the variable is not in sync with this very version
How is this supposed to work?
The best solution I have found so far is to set it on the QtC Project page for that specific build
My decision that helped me. It:
In the search for Win 10 enter sysdm.cpl
Advanced -> Environment Variables -> to System Variables -> add:
PATH
C: \ Users \ ~ \ AppData \ Local \ Programs \ Python \ Python36-32 \ Lib \ site-packages \ pyqt5_tools \ plugins \ platforms \ (your address to qminimal.dll, qoffscreen.dll, qwebgl.dll)
dll took from here: https://www.riverbankcomputing.com/software/pyqt/download5 official site
I am having trouble installing this framework.
I entered this command on terminal as per the instructions on http://symfony.com/doc/current/quick_tour/the_big_picture.html. This was from the desktop.
$ php -r "readfile('http://symfony.com/installer');" > symfony.phar
The next part requires me to add this code:
$ sudo mv symfony.phar /usr/local/bin/symfony
Now I get this error:
mv: rename symfony.phar to /usr/local/bin/symfony: Not a directory
Please help me resolve this.
Try and move it to /usr/bin instead.
The directory you're trying to move it to doesn't exist. The instructions you're following may not be intended for OS X users.
The executable can go anywhere that's in your PATH.