I have seen a lot of solutions to this problem before, but they can't solve it.
> install.packages("Rsymphony")
Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘Rsymphony’
Do you want to attempt to install these from sources? (Yes/no/cancel) y
installing the source package ‘Rsymphony’
试开URL’https://cran.rstudio.com/src/contrib/Rsymphony_0.1-28.tar.gz'
Content type 'application/x-gzip' length 8631 bytes
==================================================
downloaded 8631 bytes
* installing *source* package ‘Rsymphony’ ...
** 成功将‘Rsymphony’程序包解包并MD5和检查
Cannot find SYMPHONY libraries and headers.
See <https://projects.coin-or.org/SYMPHONY>.
ERROR: configuration failed for package ‘Rsymphony’
* removing ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rsymphony’
Warning in install.packages :
installation of package ‘Rsymphony’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/b0/n64bqfyn5y9dr3t427tljzv40000gn/T/RtmptYuOGn/downloaded_packages’
Before
brew install symphony
And Modify file R_symphony.cc & configure.
But there is still no change in this issue.
I know “SystemRequirements: SYMPHONY libraries and headers”，But I don't know how to solve it.
Related
I am using RStudio 2022.02.3 Build 492 for mac. I am trying to install the package Rdpack as a requirement to load another package and it does not work. Could you please help to tell me what the problem is and what I should do to solve it. And here is the error message I received:
install.packages('Rdpack')
also installing the dependency ‘rbibutils’
There are binary versions available but the source versions are later:
binary source needs_compilation
rbibutils 2.2.7 2.2.8 TRUE
Rdpack 2.3 2.3.1 FALSE
Do you want to install from sources the package which needs compilation? (Yes/no/cancel) Yes
installing the source packages ‘rbibutils’, ‘Rdpack’
trying URL 'https://cran.rstudio.com/src/contrib/rbibutils_2.2.8.tar.gz'
Content type 'application/x-gzip' length 882817 bytes (862 KB)
==================================================
downloaded 862 KB
trying URL 'https://cran.rstudio.com/src/contrib/Rdpack_2.3.1.tar.gz'
Content type 'application/x-gzip' length 703156 bytes (686 KB)
==================================================
downloaded 686 KB
* installing *source* package ‘rbibutils’ ...
** package ‘rbibutils’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
ERROR: compilation failed for package ‘rbibutils’
* removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/rbibutils’
Warning in install.packages :
installation of package ‘rbibutils’ had non-zero exit status
ERROR: dependency ‘rbibutils’ is not available for package ‘Rdpack’
* removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rdpack’
Warning in install.packages :
installation of package ‘Rdpack’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/r2/_r7yln992kq1x9pg298ql_s40000gn/T/RtmpMko8Ru/downloaded_packages’
Thank you so much for your help!
I hope you're staying well. I am trying to install the gifski package so that I can run tmap_animation().
Here's the error message I see:
Installing package into ‘/nfs/cfs/home4/wmjl/wmjlwuh/R/x86_64-pc-linux-gnu-library/4.0’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/gifski_1.4.3.tar.gz'
Content type 'application/x-gzip' length 12729 bytes (12 KB)
==================================================
downloaded 12 KB
* installing *source* package ‘gifski’ ...
** package ‘gifski’ successfully unpacked and MD5 sums checked
** using staged installation
./configure: line 5: cargo: command not found
------------------ RUST COMPILER NOT FOUND --------------------
Cargo was not found on the PATH. Please install cargo / rustc:
- yum install cargo (Fedora/CentOS)
- apt-get install cargo (Debian/Ubuntu)
- brew install rust (MacOS)
Alternatively install Rust from: <https://www.rust-lang.org>
---------------------------------------------------------------
ERROR: configuration failed for package ‘gifski’
* removing ‘/nfs/cfs/home4/wmjl/wmjlwuh/R/x86_64-pc-linux-gnu-library/4.0/gifski’
Warning in install.packages :
installation of package ‘gifski’ had non-zero exit status
I've tried following the instructions above (namely, installing rust on MacOS) without any success.
Can anyone provide any guidance on this issue?
Thank you so much,
Yaning
Did you follow each step on this website ??
You should probably also do the change in the PATH as said in the chapter:
Configuring the PATH environment variable
Can you provide more information of what you have done please ?
On my Macbook 10.15 in RStudio I attempted to install ggplot2, however I get errors for dependencies related to digest and rlang. I did perform a xcode-select --install to install that and also rebooted my Mac.
However it seems R can't locate xcode.
I notice that the error messages complain about the xcode path. Is this a red herring or is that the root of the problem?
Metroids-MacBook-Air:~ metroid$ xcode-select -p
/Applications/Xcode.app/Contents/Developer
What should the path be set to and why isn't it set by default?
Any thoughts?
Please see below:
> install.packages("ggplot2")
also installing the dependencies ‘digest’, ‘rlang’
There are binary versions available but the source versions are later:
binary source needs_compilation
digest 0.6.21 0.6.22 TRUE
rlang 0.4.0 0.4.1 TRUE
Do you want to install from sources the packages which need compilation? (Yes/no/cancel) Yes
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/ggplot2_3.2.1.tgz'
Content type 'application/x-gzip' length 3973186 bytes (3.8 MB)
==================================================
downloaded 3.8 MB
The downloaded binary packages are in
/var/folders/q5/pqd495t95fq3tjtbxbdsvv_00000gn/T//Rtmp8aJzND/downloaded_packages
installing the source packages ‘digest’, ‘rlang’
trying URL 'https://cran.rstudio.com/src/contrib/digest_0.6.22.tar.gz'
Content type 'application/x-gzip' length 141968 bytes (138 KB)
==================================================
downloaded 138 KB
trying URL 'https://cran.rstudio.com/src/contrib/rlang_0.4.1.tar.gz'
Content type 'application/x-gzip' length 797012 bytes (778 KB)
==================================================
downloaded 778 KB
* installing *source* package ‘digest’ ...
** package ‘digest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
dyld: Symbol not found: _kConditionalConnectionRequirementTimeWindowStartTime
Referenced from: /Applications/Xcode.app/Contents/Developer/usr/bin/../../../SharedFrameworks/DVTFoundation.framework/Versions/A/DVTFoundation
Expected in: /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
in /Applications/Xcode.app/Contents/Developer/usr/bin/../../../SharedFrameworks/DVTFoundation.framework/Versions/A/DVTFoundation
make: error: unable to locate xcodebuild, please make sure the path to the Xcode folder is set correctly!
make: error: You can set the path to the Xcode folder using /usr/bin/xcode-select -switch
ERROR: compilation failed for package ‘digest’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/digest’
Warning in install.packages :
installation of package ‘digest’ had non-zero exit status
* installing *source* package ‘rlang’ ...
** package ‘rlang’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
dyld: Symbol not found: _kConditionalConnectionRequirementTimeWindowStartTime
Referenced from: /Applications/Xcode.app/Contents/Developer/usr/bin/../../../SharedFrameworks/DVTFoundation.framework/Versions/A/DVTFoundation
Expected in: /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
in /Applications/Xcode.app/Contents/Developer/usr/bin/../../../SharedFrameworks/DVTFoundation.framework/Versions/A/DVTFoundation
make: error: unable to locate xcodebuild, please make sure the path to the Xcode folder is set correctly!
make: error: You can set the path to the Xcode folder using /usr/bin/xcode-select -switch
ERROR: compilation failed for package ‘rlang’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rlang’
Warning in install.packages :
installation of package ‘rlang’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/q5/pqd495t95fq3tjtbxbdsvv_00000gn/T/Rtmp8aJzND/downloaded_packages’
>
I am trying to install the package RWeka. I installed the java version 8, but i am keep getting this error. Can anybody help?
> install.packages('RWeka')
There is a binary version available but the source version is later:
binary source needs_compilation
RWeka 0.4-26 0.4-33 FALSE
installing the source package ‘RWeka’
trying URL 'https://cran.rstudio.com/src/contrib/RWeka_0.4-33.tar.gz'
Content type 'application/x-gzip' length 415763 bytes (406 KB)
==================================================
downloaded 406 KB
* installing *source* package ‘RWeka’ ...
** package ‘RWeka’ successfully unpacked and MD5 sums checked
Need at least Java version 1.7/7.0.
ERROR: configuration failed for package ‘RWeka’
* removing ``‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RWeka’
Warning in install.packages :
installation of package ‘RWeka’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/sh/6qsjq6gn0ysf4h1cv9nctzfr0000gn/T/RtmpCVEaSY/downloaded_packages’``
From experience, I believe there is a difference between Java and Java Offline.
Try installing the x86/x64 offline version from http://www.oracle.com/technetwork/java/javase/downloads/jre8-downloads-2133155.html (A handy link to keep hold of)
If you have the newest Java, just open a terminal and run
sudo R CMD javareconf
Then in a R-session,
install.packages("rJava",type='source')
install.packages("RWeka")
Ref: https://justrocketscience.com/post/install-rweka-mac
I am trying to install Rsymphony to be able to install fPortfolio.
I get an error when I try to install it;
install.packages("Rsymphony")
Installing package into ‘C:/Users/Olve/Documents/R/win-library/3.3’
(as ‘lib’ is unspecified)
Package which is only available in source form, and
may need compilation of C/C++/Fortran: ‘Rsymphony’
Do you want to attempt to install these from sources?
y/n: y
installing the source package ‘Rsymphony’
trying URL 'http://cran.rstudio.com/src/contrib/Rsymphony_0.1-22.tar.gz'
Content type 'application/x-gzip' length 7447 bytes
downloaded 7447 bytes
installing source package 'Rsymphony' ...
** package 'Rsymphony' successfully unpacked and MD5 sums checked
Warning: running command 'sh ./configure.win' had status 127
ERROR: configuration failed for package 'Rsymphony'
removing 'C:/Users/Olve/Documents/R/win-library/3.3/Rsymphony'
restoring previous 'C:/Users/Olve/Documents/R/win-library/3.3/Rsymphony'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Olve\Documents\R\win-library\3.3" C:\Users\Olve\AppData\Local\Temp\RtmpUjRTsG/downloaded_packages/Rsymphony_0.1-22.tar.gz' had status 1
Warning in install.packages :
installation of package ‘Rsymphony’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\Olve\AppData\Local\Temp\RtmpUjRTsG\downloaded_packages’
I use RStudio with R 3.3 and Windows 7 64bit, most of the other posts I have seen related to this is from OSX users getting slightly different error messages, and none of their solutions have helped me (downloading and installing symphony, not sure if i have done this correctly either)
Edit: Stedy's solution worked, thanks.
Since its a Windows 7 machine, you will want to use the zip file instead of the tar file:
> install.packages('Rsymphony')
Installing package into ‘C:/Users/zstednic/Documents/R/win-library/3.3’
(as ‘lib’ is unspecified)
Package which is only available in source form, and may need compilation of
C/C++/Fortran: ‘Rsymphony’
These will not be installed
> install.packages('Rsymphony_0.1-22.zip', repos=NULL)
Installing package into ‘C:/Users/zstednic/Documents/R/win-library/3.3’
(as ‘lib’ is unspecified)
package ‘Rsymphony’ successfully unpacked and MD5 sums checked
> library(Rsymphony)
>