I have an issue compiling the RInside examples on Windows.
In Rstudio, running
sourceCpp("C:/Users/Admin/Documents/R/win-library/3.5/RInside/examples/standard/rinside_sample0.cpp")
gives
fatal error: RInside.h: No such file or directory
From the command promt, running
cd C:\Users\Admin\Documents\R\win-library\3.5\RInside\examples\standard
make -f Makefile.win rinside_sample0
gives
Error in loadNamespace(name) : aucun package nommé 'Rcpp' n'est trouvé
Error in loadNamespace(name) : aucun package nommé 'RInside' n'est trouvé
Apparently these packages are not found, so I tried the following:
Ran this from the command line set R_HOME=C:\Program Files\R\R-3.5.2
Checked that Rtools and R dirs are present in the path
Modified the Makefile.win like so:
R_LIBS_USER := "C:/Users/Admin/Documents/R/win-library/3.5"
R_ARCH := --arch x64
But still getting the same errors. Any help? Thanks
EDIT: this answer might provide a solution by including this line of code somewhere
export R_LIBS_SITE=c:/R/site-library
However I don't know where to include it.
EDIT2 I have tried to reinstall Rcpp and RInside in both library locations (by running RStudio as admin)
remove.packages("Rcpp", lib = .libPaths())
remove.packages("RInside", lib = .libPaths())
install.packages("RInside", lib = .libPaths())
install.packages("Rcpp", lib = .libPaths())
library("RInside")
library("Rcpp")
In RStudio I still have the same error using sourceCpp, however, using the comand prompt and make approach I do get a different error:
make -f Makefile.win rinside_sample0
g++.exe: error: Files/R/R-3.5.2/library/RInside/include: No such file or directory
I suppose the space in the path is the problem " Files..." will try to reinstall R in a non-spaced path
Reinstalling R in a path without spaces, installing the latest packages, and setting R_HOME environment variable to the new installation folder C:\R\R-3.5.2 solved the problem.
remove.packages("Rcpp", lib = .libPaths())
remove.packages("RInside", lib = .libPaths())
install.packages("RInside", lib = .libPaths())
install.packages("Rcpp", lib = .libPaths())
library("RInside")
library("Rcpp")
Related
I receive an error when installing RQDA on Windows 10.
I had run RQDA successfully, then a package wouldn't load and I deleted and tried to reinstall RQDA with these instructions: http://rqda.r-forge.r-project.org/.
Since then, I receive errors pointing towards RGtk2 and GTK+.
I tried loading RQDA both using the newest and older versions of R and RStudio. I tried on 3 different Windows computers.
Here is the link that shows the RQDA package was recently archived:
https://cran.r-project.org/web/packages/RQDA/index.html
The archive points towards requiring gWidgets, so I made sure the library of gWidgets loads successfully, which it does, as does library(gWidgetsRGtk2).
I also took care to install RTools4.0 for R 4.0.0 (https://cran.r-project.org/bin/windows/Rtools/).
I made sure GTK+ is on my PATH. (Path: %GTK_BASEPATH%\bin;) (GTK_PATH: C:\GTK).
I also tried loading RQDA and dependencies manually, but that's a never ending process.
Here is the error I receive:
Failed to load RGtk2 dynamic library, attempting to install it.
Please install GTK+ from http://ftp.gnome.org/pub/gnome/binaries/win64/gtk+/2.22/gtk+-bundle_2.22.1-20101229_win64.zip
If the package still does not load, please ensure that GTK+ is installed and that it is on your PATH environment variable
IN ANY CASE, RESTART R BEFORE TRYING TO LOAD THE PACKAGE AGAIN
Error in getOption("encoding") : Knotenstack-Überlauf
Zusätzlich: Warnmeldung:
Failed to load RGtk2 dynamic library, attempting to install it.
Please install GTK+ from http://ftp.gnome.org/pub/gnome/binaries/win64/gtk+/2.22/gtk+-bundle_2.22.1-20101229_win64.zip
If the package still does not load, please ensure that GTK+ is installed and that it is on your PATH environment variable
IN ANY CASE, RESTART R BEFORE TRYING TO LOAD THE PACKAGE AGAIN
Error: package or namespace load failed for 'RGtk2':
.onLoad in loadNamespace() für 'RGtk2' fehlgeschlagen, Details:
Aufruf: NULL
Fehler: Knotenstack-Überlauf
Fehler: Paket 'RGtk2' konnte nicht geladen werden
Zusätzlich: Warnmeldung:
Failed to load RGtk2 dynamic library, attempting to install it.
Ausführung angehalten
ERROR: lazy loading failed for package 'RQDA'
* removing 'C:/Users/haunschild/Documents/R/win-library/4.0/RQDA'
Warning in install.packages :
installation of package ‘RQDA_0.3-1.tar.gz’ had non-zero exit status
Trying to install RGtk2, I receive the following:
Error in inDL(x, as.logical(local), as.logical(now), ...) :
kann shared object 'C:/Users/haunschild/Documents/R/win-library/4.0/RGtk2/libs/x64/RGtk2.dll' nicht laden:
LoadLibrary failure: %1 ist keine zulässige Win32-Anwendung.
versuche URL 'http://ftp.gnome.org/pub/gnome/binaries/win64/gtk+/2.22/gtk+-bundle_2.22.1-20101229_win64.zip'
Content type 'application/zip' length 25830230 bytes (24.6 MB)
downloaded 24.6 MB
Learn more about GTK+ at http://www.gtk.org
If the package still does not load, please ensure that GTK+ is installed and that it is on your PATH environment variable
IN ANY CASE, RESTART R BEFORE TRYING TO LOAD THE PACKAGE AGAIN
Lade nötiges Paket: cairoDevice
Warnmeldungen:
1: Failed to load RGtk2 dynamic library, attempting to install it.
2: In dir.create(config_path, recursive = TRUE) :
'C:\Users\haunschild\Documents\R\win-library\4.0\RGtk2\gtk\x64\etc\gtk-2.0' existiert bereits
> detach("package:RGtk2", unload = TRUE)
Fehler: Paket ‘RGtk2’ wird von ‘gWidgetsRGtk2’ benötigt, wird deshalb nicht detached ("Is needed by gWidgetsRGTk2', is therefore not detached")
> library(RGtk2)
I also tried:
pkgFile <- "RQDA_0.3-1.tar.gz"
download.file(url = url, destfile = pkgFile)
# Install dependencies
install.packages(c("DBI","RSQLite","RGtk2","gWidgets","gWidgetsRGtk2"))
# Install package
install.packages(pkgs=pkgFile, type="source", repos=NULL)
# Delete package tarball
unlink(pkgFile)
An received the same RGTk2 error loop.
Any help would be greatly appreciated! Thanks!
I've got RQDA working in Windows after:
install.packages(c("gWidgets", "RGtk2", "igraph","plogr","bit","RSQLite"),depen=T)
To install "gWidgetsRGtk2" it was needed:
Download GTK+: http://ftp.gnome.org/pub/gnome/binaries/win32/gtk+/2.22/gtk+-bundle_2.22.1-20101227_win32.zip
Create an empty folder like c:\opt\
Unzip the content of that file in the folder created. You'll have something like c:\opt\gtk+-bundle_2.22.1-20101227_win32. The name of this folder can be changed.
Then add c:\opt\gtk+-bundle_2.22.1-20101227_win32\bin to your PATH
To add the bin folder to the PATH: right-click on "My Computer" and select "Properties", then "Advanced" tab, then "Environment Variables". Select the "PATH" variable and then "Edit" Add "c:\opt\gtk+-bundle_2.22.1-20101227_win32\bin" to the items in the PATH variable.
PS. Make sure you have no other versions of GTK+ in PATH.
So You can run the following code:
url <- "https://cran.r-project.org/src/contrib/Archive/gWidgetsRGtk2/gWidgetsRGtk2_0.0-86.tar.gz"
pkgFile <- "gWidgetsRGtk2_0.0-86.tar.gz"
download.file(url = url, destfile = pkgFile)
install.packages(pkgs=pkgFile, type="source", repos=NULL)
Once the "gWidgetsRGtk2" is installed, you can run the following command to install RQDA:
install.packages("RQDA",repos="http://R-Forge.R-project.org", type="source")
REFERENCES
https://rqda.r-forge.r-project.org/
https://github.com/krlmlr/r-appveyor/issues/48
We've been discussing this issue at : https://github.com/Ronggui/RQDA/issues/38
Some have reported success installing it and have given feedback on how to do it.
Some contributors are working to port RQDA to gWidgets2. May be one of their solutions works for you.
Good luck.
After I gave the answer above I tryed to install it my self and this was as far as I've got using RKWard 0.7.1b, on VM with MsWins10.
https://rkward.kde.org/
with R 3.6.3 in RKWard library (I had RQDA working before. So I uninstalled RKWard and deleted the library directory on C:\Program Files):
https://cran.r-project.org/bin/windows/base/old/3.6.3
and RTools35
https://cran.r-project.org/bin/windows/Rtools/history.html
also installed.
install.packages(c("gWidgets", "gWidgetsRGtk2", "RGtk2", "igraph","plogr","bit","RSQLite"),depen=T)
update.packages(ask = FALSE, checkBuilt = TRUE)
library(RGtk2)
Selected GTK+
Restarted RKWard
Installing ""RQDA_0.3-1.tar.gz", type = "source"", gave me an error: "Failed to load RGtk2 dynamic library, attempting to install it". But by chance, I just saw the post by #JanMarvin and it worked!!!
install.packages("https://cran.r-project.org/src/contrib/Archive/RQDA/RQDA_0.3-1.tar.gz", type = "source", INSTALL_opts = "--no-multiarch")
Then I ran:
update.packages(ask = FALSE, checkBuilt = TRUE)
And then
library (RQDA)
And it worked!!
If anyone could please refine it or give other suggestions as how to install it on MsWin, would be very much appreciated!
Thanks to #sjewo and #JanMarvin for their hard work!! porting this package to R 4.
These steps update the previous to install RQDA. I'm using Windows 10, and this code was run on April-17, 2021:
Use R version 3.6.3, 32 bits. If possible, also install Rstudio;
Run install.packages("gWidgets", repos="http://R-Forge.R-project.org");
Run install.packages(c("RGtk2","igraph","plogr","bit","RSQLite","cairoDevice"),depen=T);
Run library("RGtk2") . An error message will appear, asking you to install GTK+. Select it and press OK;
Restart R. Then run library("RGtk2") again to see if everything is OK;
Create the folder C:\GTK;
Go to https://download.gnome.org/binaries/win32/gtk+/2.22/ and download the file gtk+-bundle_2.22.1-20101227_win32.zip in C:\GTK;
Unpack the downloaded file in C:\GTK;
Go to the System environment and add to system variables C:\GTK\bin to your PATH;
Restart Windows;
Run the following code:
url <- "https://cran.r-project.org/src/contrib/Archive/gWidgetsRGtk2/gWidgetsRGtk2_0.0-86.1.tar.gz"
pkgFile <- "gWidgetsRGtk2_0.0-86.1.tar.gz"
download.file(url = url, destfile = pkgFile)
install.packages(pkgs=pkgFile, type="source", repos=NULL);
Finally, run install.packages("RQDA",repos="http://R-Forge.R-project.org", type="source");
Enjoy!!!
FWIW, I've written a package called RQDAassist that I and my team use to help with RQDA, including installing the CRAN archive on R 4.0. Check it out and if there's any problem, do post an issue. To do the step-wise installation of RQDA
RQDAassist::install()
That's it.
Also, I noticed that active development is ongoing by RQDA maintainers, so I expect (hope) this issue to be resolved soon.
I am trying to install Rgtk2 (dependency for rattle). I am using R thru Anaconda. I am getting the following error.
In file included from Rgtk.c:7:0:
/usr/include/gtk-2.0/gdk/gdkx.h:32:10: fatal error: X11/Xlib.h: No such file or directory
#include <X11/Xlib.h>
^~~~~~~~~~~~
I tried the following workarounds as found in StackOverflow and other blogs.
Installed libx11-dev, mesa-common-dev, libglu1-mesa-dev, libxrandr-dev, libxi-dev
Tried installing RGtk2_2.20.31 from source.
Every time I am getting the same error.
anaconda has its own environment, which by default usually lacks X11 headers(e.g libx11-dev, or whatever you call it). Try "conda install -c conda-forge xorg-libx11" . It worked for me when a certain R-package threw an error "X11/Xlib.h : No such file or directory".
I would like to use the R package brms, but I get an error that I do not manage to interpret. It might have to do with Rtools, which is however installed on my computer.
This is an example from the brms package:
fit1 <- brm(count ~ log_Age_c + log_Base4_c * Trt_c
+ (1|patient) + (1|visit) + (1|obs),
data = epilepsy, family = poisson(),
prior = c(set_prior("student_t(5,0,10)", class = "b"),
set_prior("cauchy(0,2)", class = "sd")))
And this is the error I get:
Error in compileCode(f, code, language = language, verbose = verbose) :
Compilation ERROR, function(s)/method(s) not created!
c:/Rtools/mingw_64/bin/g++: not found
make: *** [file202834c75e9.o] Error 127
Warning message:
l'exécution de la commande 'make -f "C:/PROGRA~1/R/R-33~1.0/etc/x64/Makeconf" -f "C:/PROGRA~1/R/R-33~1.0/share/make/winshlib.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="file202834c75e9.dll" WIN=64 TCLBIN=64 OBJECTS="file202834c75e9.o"' renvoie un statut 2
In addition: Warning message:
running command 'C:/PROGRA~1/R/R-33~1.0/bin/x64/R CMD SHLIB file202834c75e9.cpp 2> file202834c75e9.cpp.err.txt' had status 1
Thanks for your help
Indeed, it is a problem with Rtools. What does system("g++ -v") give you? If it is status 127, Rtools cannot be found by R. Most likely, you haven't checked the box during Rtools installation where you were asked to amend the system path. I suggest that you unintall Rtools and install it again making sure to check the box. Please also verify that you are using the correct version of Rtools compatible with your R version.
I had a similar problem with my installation of rstan. The problem occurred with RTools33. Installing RTools34 seemed to fix the problem, although I now get the following warning:
In find_rtools() :
WARNING: Rtools 3.4 found on the path at c:/Rtools is not compatible with R 3.3.1.
Please download and install Rtools 3.3 from http://cran.r-project.org/bin/windows/Rtools/, remove the incompatible version from your PATH, then run find_rtools().
So far this warning appears benign.
If none of the other answers solve this issue, go into your R distribution and open
R-{version}\etc\x64\Makeconf
and change BINPREF on line 19 to whatever the path to your mingw_64\bin directory is.
To fix this error:" c:/Rtools/mingw_64/bin/g++: not found" I located RBuildTools folder on the C: drive, found the g++ file in the bin folder, copied the mingw_64 folder (or wherever your g++ file is located), created an Rtools folder on C: and pasted the mingw_64 folder. This will create the C:/Rtools/mingw_64/bin/ path you need to compile R code using the stan( ) function.
I followed the rStan wiki here on Windows Configuration.
Also instead of hacking Makevars in c:\ you can create your personal by following the instruction here.
In my %HOM%\.R\Makevars.win64 file I have
CXXFLAGS=-O3 -mtune=native -march=native -Wno-unused-variable -Wno-unused-function
BINPREF="H:/RTools/mingw_64/bin/"
This resolved my issue.
I am trying to load RQuantLib but I get the following error:
> require(RQuantLib)
Loading required package: RQuantLib
Error : .onLoad failed in loadNamespace() for 'RQuantLib', details:
call: if (is.character(qc) && nchar(qc) > 1) {
error: missing value where TRUE/FALSE needed
In addition: Warning message:
running command 'bash -c 'type -p quantlib-config' 2>/dev/null' had status 1
I am pretty new to programming in general so I am not sure what this means. I am working in an Mac OS Maverick environment, I downloaded the latest version of RQuantLib (0.3.12) and the "R Package Installer" says it is installed. (I installed RQuantLib from the terminal using "R CMD INSTALL RQuantLib" as using install.packages() from within R did not work - it gave me an error saying QuantLib was not configured, although it was running fine in from the terminal.) I am running R from the R console. QuantLib works fine and so does Rcpp.
I checked the "NAMESPACE" document in the RQuantLib folder and it says:
import(methods)
importFrom(Rcpp, Rcpp.plugin.maker)
useDynLib(RQuantLib)
exportPattern("*.default")
export(
##--arrays.R
"oldEuropeanOptionArrays",
"EuropeanOptionArrays",
"plotOptionSurface",
##--asian.R
"AsianOption",
##--bermudan.R
"BermudanSwaption",
"summary.G2Analytic",
"summary.HWAnalytic",
"summary.HWTree",
"summary.BKTree",
##--bond.R
"ZeroCouponBond",
"ZeroPriceByYield",
"ZeroYield",
"FixedRateBond",
"FixedRateBondYield",
"FixedRateBondPriceByYield",
"FloatingRateBond",
"ConvertibleZeroCouponBond",
"ConvertibleFixedCouponBond",
"ConvertibleFloatingCouponBond",
"CallableBond",
"FittedBondCurve",
##--calendars.R
"isBusinessDay", "businessDay",
"isHoliday",
"isWeekend",
"isEndOfMonth",
"getEndOfMonth", "endOfMonth",
"adjust",
"advance",
"businessDaysBetween",
"getHolidayList", "holidayList",
"setCalendarContext",
##--dayCounter.R
"dayCount",
"yearFraction",
"setEvaluationDate",
##--discount.R
"DiscountCurve",
"plot.DiscountCurve",
##--implied.R
"EuropeanOptionImpliedVolatility",
"AmericanOptionImpliedVolatility",
"BinaryOptionImpliedVolatility",
##--option.R
"EuropeanOption",
"AmericanOption",
"AmericanOption.default",
"BinaryOption",
"BarrierOption"
)
S3method("plot", "Option")
S3method("print", "Option")
S3method("summary", "Option")
S3method("plot", "Bond")
S3method("print", "Bond")
S3method("summary", "Bond")
If I try to specify the path where the Terminal wrote that it installed RQuantLib while requiring it I get the following error:
> require('RQuantLib', lib.loc = "C:/Users/dealmer/Library/R/3.1/library/RQuantLib/libs")
Loading required package: RQuantLib
Warning message:
In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
no library trees found in 'lib.loc'
So, do I need to move something from there to where the other R libraries are? (There is already a folder named "RQuantLib" in the folder where the other R library folders are, that's where I found the NAMESPACE doc for example) The path that the Terminal gave me I can't follow in the Finder window however because it doesn't show the "Library" folder and I don't know how to make it do that.)
This is what .libPaths() gives me:
> .libPaths()
[1] "/Users/dealmer/Library/R/3.1/library"
[2] "/Library/Frameworks/R.framework/Versions/3.1/Resources/library"
The R libraries are in [2].
I've tried googling but I can't find anything that seems helpful. Any help will be very appreciated. Thank you
- Dom
I think the issue is that on Linux we have quantlib-config in the $PATH:
edd#max:~$ quantlib-config --help
Usage: quantlib-config [--prefix[=DIR]] [--exec-prefix[=DIR]] [--version] \
[--libs] [--cflags]
edd#max:~$ quantlib-config --version
1.4
edd#max:~$
I don't own an OS X box, so I depend on someone like you help with a better configure setup. It should just work if you copy (or soft-link) quantlib-config into your path (eg /usr/local/bin), or adjust $PATH otherwise to include the directory it is in.
I had the same issue and after some hours of struggle I manage to use something not very rigorous but it works!
It seems that R has some issues evaluating system("bash -c 'type -p quantlib-config'").
After having installed QuantLib, typing the command bash -c 'type -p quantlib-config' in Terminal gives us the path of our quantlib-config which is for me /opt/local/bin/quantlib-config.
So I went back to my source folder for RQuantLib (version 0.4.0) and replaced qc in file R/inline.Rby:
qc <- as.character("/opt/local/bin/quantlib-config")
and rebuilt the package using the terminal command R CMD install RQuantLib/.
As I said, not very sexy but it works.
A restart of R and Rstudio is necessary.
Hope it helps!
I'm unable to install the ZIGP package in R (version 2.14.1). I've downloaded the file ZIGP_3.8.tar.gz from http://cran.r-project.org/src/contrib/Archive/ZIGP/ to the directory
"C:\Program Files\R\R-2.14.1\library". I've already tried several ways to install this package, but without success! For instance, I entered into the R program as an administrator (item "Run as administrator") and I've tried the command
install.packages("ZIGP", pkgs="C:/Program Files/R/R-2.14.1/library/ZIGP_3.8.tar.gz",repos=NULL), and the error message was:
Warning in install.packages("ZIGP", pkgs = "C:/Program Files/R/R-2.14.1/library/ZIGP_3.8.tar.gz", :
'lib = "ZIGP"' is not writable
Error in install.packages("ZIGP", pkgs = "C:/Program Files/R/R-2.14.1/library/ZIGP_3.8.tar.gz", :
unable to install packages
I've changed the security status in R properties, but the error remains the same.
Do anyone have any idea to solve this problem?
Thanks very much in advance.