with cloudera install doc step by step I have in trouble with Install Agents
like this:
It said install failed and can not receive signal.
And I find the log like this:
[13/Nov/2018 16:44:19 +0000] 4306 MainThread agent ERROR Heartbeating to ryze-1.bigdata.com:7182 failed.
Traceback (most recent call last):
File "/opt/cloudera/cm-agent/lib/python2.7/site-packages/cmf/agent.py", line 1371, in _send_heartbeat
response = self.requestor.request('heartbeat', heartbeat_data)
File "/opt/cloudera/cm-agent/lib/python2.7/site-packages/avro/ipc.py", line 141, in request
return self.issue_request(call_request, message_name, request_datum)
File "/opt/cloudera/cm-agent/lib/python2.7/site-packages/avro/ipc.py", line 254, in issue_request
call_response = self.transceiver.transceive(call_request)
File "/opt/cloudera/cm-agent/lib/python2.7/site-packages/avro/ipc.py", line 483, in transceive
result = self.read_framed_message()
File "/opt/cloudera/cm-agent/lib/python2.7/site-packages/avro/ipc.py", line 489, in read_framed_message
framed_message = response_reader.read_framed_message()
File "/opt/cloudera/cm-agent/lib/python2.7/site-packages/avro/ipc.py", line 417, in read_framed_message
raise ConnectionClosedException("Reader read 0 bytes.")
ConnectionClosedException: Reader read 0 bytes.
I try to solve it with google I already check these setting.
/etc/cloudera-scm-agent/config.ini the port set 7182 and server_host set ryze-1.bigdata.com.
iptable altready shutdown with sudo service iptables stop
ryze-1.bigdata.com is reachable. and telnet ryze-1.bigdata.com 7183 can succeed.
OS: Centos7.4
Platform: AliCloud
So what can I do? Any one can help me ?
I closed the ssl option.
Everything is fine now.......
Related
Setup
Windows 10
Docker for Windows v18.09.0
AWS SAM CLI v0.10.0
Python 3.7.0
AWS CLI v1.16.67
dotnet core sdk v2.1.403
Powershell v5.1.17134.407
Problem
I'm following the quickstart for AWS SAM Local (as well as the readme generated once the init command is executed below), using the dotnetcore2.1 runtime.
I've run the following command to initialise AWS SAM for use with dotnetcore2.1
sam init --runtime dtonetcore2.1
Then I created the package by running
build.ps1 --target=package
Finally I start the local API Gateway service by running
sam local start-api
I then open a browser and navigate to http://localhost:3000/hello where I'm presented with the following:
PS C:\Users\user_name\Documents\Workspace\messaround\aws-sam\sam-app> sam local start-api
2019-01-04 10:39:15 Found credentials in shared credentials file: ~/.aws/credentials
2019-01-04 10:39:15 Mounting HelloWorldFunction at http://127.0.0.1:3000/hello [GET]
2019-01-04 10:39:15 You can now browse to the above endpoints to invoke your functions. You do not need to restart/reload SAM CLI while working on your functions changes will be reflected instantly/automatically. You only need to restart SAM CLI if you update your AWS SAM template
2019-01-04 10:39:16 * Running on http://127.0.0.1:3000/ (Press CTRL+C to quit)
2019-01-04 10:40:10 Invoking HelloWorld::HelloWorld.Function::FunctionHandler (dotnetcore2.1)
2019-01-04 10:40:10 Decompressing C:\Users\user_name\Documents\Workspace\messaround\aws-sam\sam-app\artifacts\HelloWorld.zip
Fetching lambci/lambda:dotnetcore2.1 Docker container image......
2019-01-04 10:40:13 Mounting C:\Users\user_name\AppData\Local\Temp\tmpq0zka7a7 as /var/task:ro inside runtime container
2019-01-04 10:40:14 Exception on /hello [GET]
Traceback (most recent call last):
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\docker\api\client.py", line 246, in _raise_for_status
response.raise_for_status()
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\requests\models.py", line 940, in raise_for_status
raise HTTPError(http_error_msg, response=self)
requests.exceptions.HTTPError: 500 Server Error: Internal Server Error for url: http+docker://localnpipe/v1.35/containers/102dda11417068e01873242be2383c78c7ad4e2739fd4f8b42c1e0ea494d2bbb/start
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\flask\app.py", line 2292, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\flask\app.py", line 1815, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\flask\app.py", line 1718, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\flask\_compat.py", line 35, in reraise
raise value
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\flask\app.py", line 1813, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\flask\app.py", line 1799, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\samcli\local\apigw\local_apigw_service.py", line 153, in _request_handler
self.lambda_runner.invoke(route.function_name, event, stdout=stdout_stream_writer, stderr=self.stderr)
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\samcli\commands\local\lib\local_lambda.py", line 85, in invoke
self.local_runtime.invoke(config, event, debug_context=self.debug_context, stdout=stdout, stderr=stderr)
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\samcli\local\lambdafn\runtime.py", line 86, in invoke
self._container_manager.run(container)
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\samcli\local\docker\manager.py", line 98, in run
container.start(input_data=input_data)
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\samcli\local\docker\container.py", line 187, in start
real_container.start()
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\docker\models\containers.py", line 390, in start
return self.client.api.start(self.id, **kwargs)
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\docker\utils\decorators.py", line 19, in wrapped
return f(self, resource_id, *args, **kwargs)
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\docker\api\container.py", line 1075, in start
self._raise_for_status(res)
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\docker\api\client.py", line 248, in _raise_for_status
raise create_api_error_from_http_exception(e)
File "C:\Users\user_name\AppData\Roaming\Python\Python37\site-packages\docker\errors.py", line 31, in create_api_error_from_http_exception
raise cls(e, response=response, explanation=explanation)
docker.errors.APIError: 500 Server Error: Internal Server Error ("error while creating mount source path '/host_mnt/c/Users/user_name/AppData/Local/Temp/tmpq0zka7a7': mkdir /host_mnt/c/Users/user_name/AppData: permission denied")
2019-01-04 10:40:14 127.0.0.1 - - [04/Jan/2019 10:40:14] "GET /hello HTTP/1.1" 502 -
2019-01-04 10:40:14 127.0.0.1 - - [04/Jan/2019 10:40:14] "GET /favicon.ico HTTP/1.1" 403 -
What I've tried
Resetting the shared drive credentials
Initially I though this was a permissioning error between my Windows drive and the VM running docker... After searching the docker forums I found this article which I've followed. However this doesn't seem to have changed the error message
Any suggestions would be greatly received. Thanks
That's how I fixed my problem:
When SAM CLI sees a zip, it unzip into a temp directory (looks to be C:/Users/user_name/AppData/Local/Temp/tmpq0zka7a7 in your case).
Docker must have access to that folder.
In my case, I've created a local user to give Docker access to shared drives and that local user didn't have access to C:/Users/user_name.
I gave it access and got my problem sorted. Maybe you can fix it the same way.
Try to run the following:
docker run --rm -v c:/Users/user_name:/data alpine ls /data
It should list c:/Users/user_name content if all is fine.
Good luck!
I'm running Airflow on a clustered environment running on two AWS EC2-Instances. One for master and one for the worker. The worker node though periodically throws this error when running "$airflow worker":
[2018-08-09 16:15:43,553] {jobs.py:2574} WARNING - The recorded hostname ip-1.2.3.4 does not match this instance's hostname ip-1.2.3.4.eco.tanonprod.comanyname.io
Traceback (most recent call last):
File "/usr/bin/airflow", line 27, in <module>
args.func(args)
File "/usr/local/lib/python3.6/site-packages/airflow/bin/cli.py", line 387, in run
run_job.run()
File "/usr/local/lib/python3.6/site-packages/airflow/jobs.py", line 198, in run
self._execute()
File "/usr/local/lib/python3.6/site-packages/airflow/jobs.py", line 2527, in _execute
self.heartbeat()
File "/usr/local/lib/python3.6/site-packages/airflow/jobs.py", line 182, in heartbeat
self.heartbeat_callback(session=session)
File "/usr/local/lib/python3.6/site-packages/airflow/utils/db.py", line 50, in wrapper
result = func(*args, **kwargs)
File "/usr/local/lib/python3.6/site-packages/airflow/jobs.py", line 2575, in heartbeat_callback
raise AirflowException("Hostname of job runner does not match")
airflow.exceptions.AirflowException: Hostname of job runner does not match
[2018-08-09 16:15:43,671] {celery_executor.py:54} ERROR - Command 'airflow run arl_source_emr_test_dag runEmrStep2WaiterTask 2018-08-07T00:00:00 --local -sd /var/lib/airflow/dags/arl_source_emr_test_dag.py' returned non-zero exit status 1.
[2018-08-09 16:15:43,681: ERROR/ForkPoolWorker-30] Task airflow.executors.celery_executor.execute_command[875a4da9-582e-4c10-92aa-5407f3b46d5f] raised unexpected: AirflowException('Celery command failed',)
Traceback (most recent call last):
File "/usr/local/lib/python3.6/site-packages/airflow/executors/celery_executor.py", line 52, in execute_command
subprocess.check_call(command, shell=True)
File "/usr/lib64/python3.6/subprocess.py", line 291, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'airflow run arl_source_emr_test_dag runEmrStep2WaiterTask 2018-08-07T00:00:00 --local -sd /var/lib/airflow/dags/arl_source_emr_test_dag.py' returned non-zero exit status 1.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.6/dist-packages/celery/app/trace.py", line 382, in trace_task
R = retval = fun(*args, **kwargs)
File "/usr/lib/python3.6/dist-packages/celery/app/trace.py", line 641, in __protected_call__
return self.run(*args, **kwargs)
File "/usr/local/lib/python3.6/site-packages/airflow/executors/celery_executor.py", line 55, in execute_command
raise AirflowException('Celery command failed')
airflow.exceptions.AirflowException: Celery command failed
When this error occurs the task is marked as failed on Airflow and thus fails my DAG when nothing actually went wrong in the task.
I'm using Redis as my queue and postgreSQL as my meta-database. Both are external as AWS services. I'm running all of this on my company environment which is why the full name of the server is ip-1.2.3.4.eco.tanonprod.comanyname.io. It looks like it wants this full name somewhere but I have no idea where I need to fix this value so that it's getting ip-1.2.3.4.eco.tanonprod.comanyname.io instead of just ip-1.2.3.4.
The really weird thing about this issue is that it doesn't always happen. It seems to just randomly happen every once in a while when I run the DAG. It's also occurring on all of my DAGs sporadically so it's not just one DAG. I find it strange though how it's sporadic because that means other task runs are handling the IP address for whatever this is just fine.
Note: I've changed the real IP address to 1.2.3.4 for privacy reasons.
Answer:
https://github.com/apache/incubator-airflow/pull/2484
This is exactly the problem I am having and other Airflow users on AWS EC2-Instances are experiencing it as well.
The hostname is set when the task instance runs, and is set to self.hostname = socket.getfqdn(), where socket is the python package import socket.
The comparison that triggers this error is:
fqdn = socket.getfqdn()
if fqdn != ti.hostname:
logging.warning("The recorded hostname {ti.hostname} "
"does not match this instance's hostname "
"{fqdn}".format(**locals()))
raise AirflowException("Hostname of job runner does not match")
It seems like the hostname on the ec2 instance is changing on you while the worker is running. Perhaps try manually setting the hostname as described here https://forums.aws.amazon.com/thread.jspa?threadID=246906 and see if that sticks.
I had a similar problem on my Mac. It fixed it setting hostname_callable = socket:gethostname in airflow.cfg.
Personally when running on my Mac, I found that I got similar errors to this when the Mac would sleep while I was running a long job. The solution was to go into System Preferences -> Energy Saver and then check "Prevent computer from sleeping automatically when the display is off."
I have a simple Vagrantfile:
Vagrant.configure(2) do |config|
config.omnibus.chef_version = '12.9.38'
config.vm.network "private_network", type: "dhcp"
config.vm.boot_timeout = 60
config.vm.define "node0" do |node0|
node0.vm.box = "baremettle/ubuntu-14.04"
node0.vm.hostname = "node0"
node0.vm.synced_folder "./", "/vagrant", type: "rsync"
node0.vm.provider :libvirt do |qemu|
qemu.driver = "kvm"
qemu.memory = 1024
end
end
end
And when I try to bring machine up I get the following:
The following SSH command responded with a non-zero exit status.
Vagrant assumes that this means the command failed!
sh install.sh -v 12.9.38 2>&1
Stdout from the command:
ubuntu 14.04 x86_64
Getting information for chef stable 12.9.38 for ubuntu...
downloading https://omnitruck-direct.chef.io/stable/chef/metadata?v=12.9.38&p=ubuntu&pv=14.04&m=x86_64
to file /tmp/install.sh.1550/metadata.txt
trying wget...
trying perl...
trying python...
Unable to retrieve a valid package!
Version: 12.9.38
Please file a Bug Report at https://github.com/chef/omnitruck/issues/new
Alternatively, feel free to open a Support Ticket at https://www.chef.io/support/tickets
More Chef support resources can be found at https://www.chef.io/support
Please include as many details about the problem as possible i.e., how to reproduce
the problem (if possible), type of the Operating System and its version, etc.,
and any other relevant details that might help us with troubleshooting.
Metadata URL: https://omnitruck-direct.chef.io/stable/chef/metadata?v=12.9.38&p=ubuntu&pv=14.04&m=x86_64
DEBUG OUTPUT FOLLOWS:
STDERR from wget:
--2016-06-13 15:54:03-- https://omnitruck-direct.chef.io/stable/chef/metadata?v=12.9.38&p=ubuntu&pv=14.04&m=x86_64
Resolving omnitruck-direct.chef.io (omnitruck-direct.chef.io)... failed: Name or service not known.
wget: unable to resolve host address ‘omnitruck-direct.chef.io’
STDERR from perl:
Can't locate LWP/Simple.pm in #INC (you may need to install the LWP::Simple module) (#INC contains: /etc/perl /usr/local/lib/perl/5.18.2 /usr/local/share/perl/5.18.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.18 /usr/share/perl/5.18 /usr/local/lib/site_perl .) at -e line 1.
BEGIN failed--compilation aborted at -e line 1.
STDERR from python:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/lib/python2.7/urllib2.py", line 127, in urlopen
return _opener.open(url, data, timeout)
File "/usr/lib/python2.7/urllib2.py", line 404, in open
response = self._open(req, data)
File "/usr/lib/python2.7/urllib2.py", line 422, in _open
'_open', req)
File "/usr/lib/python2.7/urllib2.py", line 382, in _call_chain
result = func(*args)
File "/usr/lib/python2.7/urllib2.py", line 1222, in https_open
return self.do_open(httplib.HTTPSConnection, req)
File "/usr/lib/python2.7/urllib2.py", line 1184, in do_open
raise URLError(err)
urllib2.URLError: <urlopen error [Errno -2] Name or service not known>
Stderr from the command:
And after that machine is runnign but chef is not installed. And is I ssh into it and try to ping, for example, google.com, I will get:
vagrant#node0:~$ ping google.com
ping: unknown host google.com
But on host machine ping works as expected, without problems.
I'm using default libvirt network:
<network>
<name>default</name>
<uuid>bd07c4da-891b-4e37-b1d0-16fabb6581c2</uuid>
<forward mode='nat'>
<nat>
<port start='1024' end='65535'/>
</nat>
</forward>
<bridge name='virbr0' stp='on' delay='0'/>
<mac address='52:54:00:79:b9:3b'/>
<ip address='192.168.122.1' netmask='255.255.255.0'>
<dhcp>
<range start='192.168.122.2' end='192.168.122.254'/>
</dhcp>
</ip>
</network>
Vagrant version is 1.8.1
Virsh version is 1.2.2
Vagrant plugins installed:
vagrant-libvirt (0.0.33)
vagrant-omnibus (1.4.1)
UPDATE:
Adding to hosts(or guests) /etc/resolv.conf
nameserver 8.8.8.8
seems to solve the issue.
But I've never had that problem with virtualbox. Could it be that I missed something in libvirt or vagrant configuration?
My question's pretty much in the title. Again, when trying to issue a clone, pull, or incoming command using mercurial from any repository on an HgLab server (whether that repository was already created from scratch on the server, or whether that repository was already pushed to the server, in both cases prior to issuing a supposedly erroneous command), I get a mismatch error. Here's the log:
hg --verbose --debug --traceback incoming http://user#server:81/hg/project/repository
using http://server:81/hg/project/repository
http auth: user user, password not set sending capabilities command
[HgKeyring] Keyring URL: http://server:81/hg/project/repository
[HgKeyring] Looking for password for user user and url http://server:81/hg/project/ repository
[HgKeyring] Keyring password found. Url: http://server:81/hg/project/ repository, user: user, passwd: *****
comparing with http://user#server:81/hg/project/ repository
query 1; heads
sending batch command
searching for changes
all local heads known remotely
sending getbundle command
Traceback (most recent call last):
File "mercurial\dispatch.pyo", line 204, in _runcatch
File "mercurial\dispatch.pyo", line 887, in _dispatch
File "mercurial\dispatch.pyo", line 632, in runcommand
File "mercurial\dispatch.pyo", line 1017, in _runcommand
File "mercurial\dispatch.pyo", line 978, in checkargs
File "mercurial\dispatch.pyo", line 884, in
File "mercurial\util.pyo", line 1005, in check
File "mercurial\commands.pyo", line 5067, in incoming
File "mercurial\hg.pyo", line 820, in incoming
File "mercurial\hg.pyo", line 783, in _incoming
File "mercurial\bundlerepo.pyo", line 509, in getremotechanges
File "mercurial\bundle2.pyo", line 1319, in writebundle
File "mercurial\changegroup.pyo", line 102, in writechunks
File "mercurial\bundle2.pyo", line 1312, in chunkiter
File "mercurial\changegroup.pyo", line 228, in getchunks
File "mercurial\changegroup.pyo", line 48, in getchunk
File "mercurial\changegroup.pyo", line 43, in readexactly
abort: stream ended unexpectedly (got 0 bytes, expected 4)
Before anyone is willing to provide easy solutions, it should suffice to know that I've tried the following already:
Look up existing solutions on stackoverflow, none of which worked. Some of them are:
Using an older version of Mercurial (downgrading from 3.5.1 to 3.4.2)
Running hg verify on both the local machine and the server to fix inconsistencies in both repositories
hg pull -r 0 http://user#server:81/hg/project/repository (gives the same error)
hg pull -f -r 0 http://user#server:81/hg/project/repository (gives the same error)
hg incoming -r 0 http://user#server:81/hg/project/repository (gives the same error)
hg incoming -f -r 0 http://user#server:81/hg/project/repository (gives the same error)
It should also be noted that hg outgoing and hg push don't give any problems whatsoever.
Please help!
Thanks guys :)
There's a bug in HgLab in the component that handles bundling the response to hg incoming or hg pull. The exact details are unclear; you'll want to contact their customer support for details (they're very responsive).
If version 1.10.6 does not have the fix, versions after that should have it.
I am trying to install Plone in Ubuntu LTS 14 (newly built server) with Bika with the procedure here:
https://github.com/bikalabs/Bika-LIMS/blob/0c606e0/INSTALL.rst
I can start the Plone server using the command:
sudo -u plone_daemon bin/plonectl zeoserver start
/usr/local/Plone/zeocluster# sudo -u plone_daemon bin/plonectl restart zeoserver
zeoserver: .
daemon process started, pid=3864
/usr/local/Plone/zeocluster# sudo -u plone_daemon bin/plonectl status zeoserver
zeoserver: program running; pid=3864
But when I start the client1, it shows
ERROR Application Could not import Products.ATExtensions':
sudo -u plone_daemon bin/plonectl client1 fg
The client1 could not be started.
Could you please help advise what the possible cause could be?
Here are the error messages while starting the client1:
/usr/local/Plone/zeocluster# sudo -u plone_daemon bin/plonectl fg client1
client1: 2015-10-11 12:37:05 INFO ZServer HTTP server started at Sun Oct 11 12:37:05 2015
Hostname: 0.0.0.0
Port: 8080
2015-10-11 12:37:07 ERROR Application Could not import Products.ATExtensions
Traceback (most recent call last):
File "/usr/local/Plone/buildout-cache/eggs/Zope2-2.13.23-py2.7.egg/OFS/Application.py", line 606, in import_product
product=__import__(pname, global_dict, global_dict, silly)
File "/usr/local/Plone/buildout-cache/eggs/Products.ATExtensions-1.1-py2.7.egg/Products/ATExtensions/__init__.py", line 18, in module
validation.register(PartialUrlValidator('isPartialUrl'))
File "/usr/local/Plone/buildout-cache/eggs/Products.validation-2.0-py2.7.egg/Products/validation/service.py", line 33, in register
raise FalseValidatorError, validator
FalseValidatorError: <Products.ATExtensions.validator.isPartialUrl.PartialUrlValidator instance at 0x7fe90f0048c0>
Traceback (most recent call last):
File "/usr/local/Plone/zeocluster/parts/client1/bin/interpreter", line 302, in module
exec(compile(__file__f.read(), __file__, "exec"))
File "/usr/local/Plone/buildout-cache/eggs/Zope2-2.13.23-py2.7.egg/Zope2/Startup/run.py", line 76, in module
run()
File "/usr/local/Plone/buildout-cache/eggs/Zope2-2.13.23-py2.7.egg/Zope2/Startup/run.py", line 22, in run
starter.prepare()
File "/usr/local/Plone/buildout-cache/eggs/Zope2-2.13.23-py2.7.egg/Zope2/Startup/__init__.py", line 86, in prepare
self.startZope()
File "/usr/local/Plone/buildout-cache/eggs/Zope2-2.13.23-py2.7.egg/Zope2/Startup/__init__.py", line 262, in startZope
Zope2.startup()
File "/usr/local/Plone/buildout-cache/eggs/Zope2-2.13.23-py2.7.egg/Zope2/__init__.py", line 47, in startup
_startup()
File "/usr/local/Plone/buildout-cache/eggs/Zope2-2.13.23-py2.7.egg/Zope2/App/startup.py", line 67, in startup
OFS.Application.import_products()
File "/usr/local/Plone/buildout-cache/eggs/Zope2-2.13.23-py2.7.egg/OFS/Application.py", line 583, in import_products
import_product(product_dir, product_name, raise_exc=debug_mode)
File "/usr/local/Plone/buildout-cache/eggs/Zope2-2.13.23-py2.7.egg/OFS/Application.py", line 606, in import_product
product=__import__(pname, global_dict, global_dict, silly)
File "/usr/local/Plone/buildout-cache/eggs/Products.ATExtensions-1.1-py2.7.egg/Products/ATExtensions/__init__.py", line 18, in module
validation.register(PartialUrlValidator('isPartialUrl'))
File "/usr/local/Plone/buildout-cache/eggs/Products.validation-2.0-py2.7.egg/Products/validation/service.py", line 33, in register
raise FalseValidatorError, validator
Products.validation.exceptions.FalseValidatorError: <Products.ATExtensions.validator.isPartialUrl.PartialUrlValidator instance at 0x7fe90f0048c0>
Bika LIMS will not work out of the box in Plone 5, as it depends on Products.ATExtensions and this package seems not to be compatible with Plone 5.
Besides that, Archetypes is not installed by default on Plone 5.