Extract first letter in each word in R - r

I had a data.frame with some categorical variables. Let's suppose sentences is one of these variables:
sentences <- c("Direito à participação e ao controle social",
"Direito a ser ouvido pelo governo e representantes",
"Direito aos serviços públicos",
"Direito de acesso à informação")
For each value, I would like to extract just the first letter of each word, ignoring if the word has 4 letters or less (e, de, à, a, aos, ser, pelo), My goal is create acronym variables. I expect the following result:
[1] "DPCS", "DOGR", "DSP", "DAI
I tried to make a pattern subset using stringr with a regex pattern founded here:
library(stringr)
pattern <- "^(\b[A-Z]\w*\s*)+$"
str_subset(str_to_upper(sentences), pattern)
But I got an error when creating the pattern object:
Error: '\w' is an escape sequence not recognized in the string beginning with ""^(\b[A-Z]\w"
What am I doing wrong?
Thanks in advance for any help.

You can use gsub to delete all the unwanted characters and remain with the ones you want. From the expected output, it seems you are still using characters from words tht are 3 characters long:
gsub('\\b(\\pL)\\pL{2,}|.','\\U\\1',sentences,perl = TRUE)
[1] "DPCS" "DSOPGR" "DASP" "DAI"
But if we were to ignore the words you indicated then it would be:
gsub('\\b(\\pL)\\pL{4,}|.','\\U\\1',sentences,perl = TRUE)
[1] "DPCS" "DOGR" "DSP" "DAI"

#Onyambu's answer is great, though as a regular expression beginner, it does take me a long time to try to understand it so that I can make modifications to suit my own needs.
Here is my understanding to gsub('\\b(\\pL)\\pL{4,}|.','\\U\\1',sentences,perl = TRUE).
Post in the hope of being helpful to others.
Background information:
\\b: boundary of word
\\pL matches any kind of letter from any language
{4,} is an occurrence indicator
{m}: The preceding item is matched exactly m times.
{m,}: The preceding item is matched m or more times, i.e., m+
{m,n}: The preceding item is matched at least m times, but not more than n times.
| is OR logic operator
. represents any one character except newline.
\\U\\1 in the replacement text is to reinsert text captured by the pattern as well as capitalize the texts. Note that parentheses () create a numbered capturing group in the pattern.
With all the background knowledge, the interpretation of the command is
replace words matching \\b(\\pL)\\pL{4,} with the first letter
replace any character not matching the above pattern with "" as nothing is captured for this group
Here are two great places I learned all these backgrounds.
https://www.regular-expressions.info/rlanguage.html
https://www3.ntu.edu.sg/home/ehchua/programming/howto/Regexe.html

You can use this pattern: (?<=^| )\S(?=\pL{4,})
I used a positive lookbehind to make sure the matches are preceded by either a space or the beginning of the line. Then I match one character, only if it is followed by 4 or more letters, hence the positive lookahead.
I suggest you don't use \w for non-English languages, because it won't match any characters with accents. Instead, \pL matches any letter from any language.
Once you have your matches, you can just concatenate them to create your strings (dpcs, dogr, etc...)
Here's a demo

Related

How to split strings of different lengths followed by numbers in R?

This is on request to ask a new question based on a previous one I asked here: I have a list of compounds like the following:
Ag0.05Zr1.0
Al0.11W1.0
Al0.18Cr1.0
AlFe
AlFe0.2NiCuCoCr
AlFe0.2NiCuCoCz
AlFeNi
AlFeNiCo
AlFeNiCrCo
AlFeNiCrCoCu0.2
AlFeNiCu0.2CoCr
Cr1.0Mo0.33
U0.33Zr1.0
V0.33W1.0
V1.0W1.0
I need to split and place an underscore in between element names. Now the element names can be single Capital letter, or 1 Capital letter followed by a small letter. I have achieved so far placing a '_' in between strings containing 2 letters. However whenever a Single letter element is concerned it is giving the following:
"Element V1.0 in compound Co_1.0_Cu_1.0_Fe_1.0_5_Nb_0.5_6_Ni_1.0 entered does not exist!". (Error message generated by the code) However I want it to be the following:
"V_1.0_Co_1.0_Cu_1.0_Fe_1.05_Nb_0.56_Ni_1.0"
So it is not only grouping single letters with numbers, it is also failing to identify all numbers grouped together. Can anyone please help? I used the following code to achieve this:
elem = gsub("(?<=[a-z0-9])(?=[0-9A-Z])", "_", elem, perl = TRUE)
where elem is my list of compounds.
The numbers are basically element fractions, So the error message should read like:
Error: Element 'Cz' (or 'Z' a single letter element which does not exist in the periodic table), " in compound xyz entered does not exist!
You can provide multiple replacement patterns in gsub using |.
# data
elem <- c("Ag0.05Zr1.0", "Al0.11W1.0", "Al0.18Cr1.0", "AlFe", "AlFe0.2NiCuCoCr",
"AlFe0.2NiCuCoCz", "AlFeNi", "AlFeNiCo", "AlFeNiCrCo", "AlFeNiCrCoCu0.2",
"AlFeNiCu0.2CoCr", "Cr1.0Mo0.33", "U0.33Zr1.0", "V0.33W1.0", "V1.0W1.0")
# solution
elem <- gsub("(?<=[a-z0-9])(?=[A-Z])|(?<=[a-z])(?=[0-9])|(?<=[A-Z])(?=[0-9])",
"_", elem, perl = TRUE)
elem
"Ag_0.05_Zr_1.0"
"Al_0.11_W_1.0"
"Al_0.18_Cr_1.0"
"Al_Fe"
"Al_Fe_0.2_Ni_Cu_Co_Cr"
"Al_Fe_0.2_Ni_Cu_Co_Cz"
"Al_Fe_Ni"
"Al_Fe_Ni_Co"
"Al_Fe_Ni_Cr_Co"
"Al_Fe_Ni_Cr_Co_Cu_0.2"
"Al_Fe_Ni_Cu_0.2_Co_Cr"
"Cr_1.0_Mo_0.33"
"U_0.33_Zr_1.0"
"V_0.33_W_1.0"
"V_1.0_W_1.0"
I made two changes to the gsub in the original post:
I changed the replacement pattern (?<=[a-z0-9])(?=[0-9A-Z]) to two separate replacement patterns (?<=[a-z0-9])(?=[A-Z])|(?<=[a-z])(?=[0-9]) because the original replacement pattern inserted "_" between double digits as well (e.g., "Cr_1.0_Mo_0.3_3").
I added a third replacement pattern (?<=[A-Z])(?=[0-9]) to insert "_" between capital letters and numbers.

Can quantifiers be used in regex replacement in R?

My objective would be replacing a string by a symbol repeated as many characters as have the string, in a way as one can replace letters to capital letters with \\U\\1, if my pattern was "...(*)..." my replacement for what is captured by (*) would be something like x\\q1 or {\\q1}x so I would get so many x as characters captured by *.
Is this possible?
I am thinking mainly in sub,gsub but you can answer with other libraris like stringi,stringr, etc.
You can use perl = TRUE or perl = FALSE and any other options with convenience.
I assume the answer can be negative, since seems to be quite limited options (?gsub):
a replacement for matched pattern in sub and gsub. Coerced to character if possible. For fixed = FALSE this can include backreferences "\1" to "\9" to parenthesized subexpressions of pattern. For perl = TRUE only, it can also contain "\U" or "\L" to convert the rest of the replacement to upper or lower case and "\E" to end case conversion. If a character vector of length 2 or more is supplied, the first element is used with a warning. If NA, all elements in the result corresponding to matches will be set to NA.
Main quantifiers are (?base::regex):
?
The preceding item is optional and will be matched at most once.
*
The preceding item will be matched zero or more times.
+
The preceding item will be matched one or more times.
{n}
The preceding item is matched exactly n times.
{n,}
The preceding item is matched n or more times.
{n,m}
The preceding item is matched at least n times, but not more than m times.
Ok, but it seems to be an option (which is not in PCRE, not sure if in PERL or where...) (*) which captures the number of characters the star quantifier is able to match (I found it at https://www.rexegg.com/regex-quantifier-capture.html) so then it could be used \q1 (same reference) to refer to the first captured quantifier (and \q2, etc.). I also read that (*) is equivalent to {0,} but I'm not sure if this is really the fact for what I'm interested in.
EDIT UPDATE:
Since asked by commenters I update my question with an specific example provide by this interesting question. I modify a bit the example. Let's say we have a <- "I hate extra spaces elephant" so we are interested in keeping the a unique space between words, the 5 first characters of each word (till here as the original question) but then a dot for each other character (not sure if this is what is expected in the original question but doesn't matter) so the resulting string would be "I hate extra space. eleph..." (one . for the last s in spaces and 3 dots for the 3 letters ant in the end of elephant). So I started by keeping the 5 first characters with
gsub("(?<!\\S)(\\S{5})\\S*", "\\1", a, perl = TRUE)
[1] "I hate extra space eleph"
How should I replace the exact number of characters in \\S* by dots or any other symbol?
Quantifiers cannot be used in the replacement pattern, nor the information how many chars they match.
What you need is a \G base PCRE pattern to find consecutive matches after a specific place in the string:
a <- "I hate extra spaces elephant"
gsub("(?:\\G(?!^)|(?<!\\S)\\S{5})\\K\\S", ".", a, perl = TRUE)
See the R demo and the regex demo.
Details
(?:\G(?!^)|(?<!\S)\S{5}) - the end of the previous successful match or five non-whitespace chars not preceded with a non-whitespace char
\K - a match reset operator discarding text matched so far
\S - any non-whitespace char.
gsubfn is like gsub except the replacement string can be a function which inputs the match and outputs the replacement. The function can optionally be expressed a formula as we do here replacing each string of word characters with the output of the function replacing that string. No complex regular expressions are needed.
library(gsubfn)
gsubfn("\\w+", ~ paste0(substr(x, 1, 5), strrep(".", max(0, nchar(x) - 5))), a)
## [1] "I hate extra space. eleph..."
or almost the same except function is slightly different:
gsubfn("\\w+", ~ paste0(substr(x, 1, 5), substring(gsub(".", ".", x), 6)), a)
## [1] "I hate extra space. eleph..."

Extracting word with co-occurring alphabets in R

I wanted to extract certain words from a bigger word-list. One example of a desired extracted word-list is: extract all the words that contain /s/ followed by /r/. So this should give me words such as sər'ka:rəh, e:k'sa:r, səmʋitərəɳ, and so:'ha:rd. from the bigger word-list.
Consider the data (IPA transcription) to be the one given below:
sər'ka:rəh
sə'lᴔ:nija:
hã:ki:
pu:'dʒa:ẽ:
e:k'sa:r
mritko:
dʒʱã:sa:
pə'hũtʃ'ne:'ʋa:le:
kərəpʈ
tʃinhirit
tʃʰəʈʈʰi:
dʱũdʱ'la:pən
səmʋitərəɳ
so:'ha:rd
məl'ʈi:spe:'ʃijliʈi:
la:'pər'ʋa:i:
upləbɡʱ
Thanks much!
Here's an answer to the issue described in the first paragraph of your post. (To my mind, the examples in the second paragraph are inconsistent with the issue described in the first para, so I'll take the liberty of ignoring them here).
You say you want to "extract all the words that contain p followed by t". The word 'extract' implies that there are other characters in the same string than those you want to match and extract. The verb 'contain' implies that the words you want to extract need not necessarily have p in word-initial position. Based on these premises, here's some mock data and a solution to the task:
Data:
x <- c("pastry is to the pastor's appetite what pot is to the pupil's")
Solution:
libary(stringr)
unlist(str_extract_all(x, "\\b\\w*(?<=p)\\w*t\\w*\\b"))
This uses word boundaries \\b to extract the target words from the surrounding context; it further uses positive lookbehind (?<=...) to assert the condition that for there to be a matching t there needs to be a p character occurring prior to the match.
The regex in more detail:
\\b: the opening word boundary
\\w*: zero or more alphanumeric chars (or an underscore)
(?<=p): positive lookbehind: "if and only if you see a p char on
the left..."
\\w*: zero or more alphanumeric chars (or an underscore)
t: the literal character t
\\w*: zero or more alphanumeric chars (or an underscore)
\\b: the closing word boundary
Result:
[1] "pastry" "pastor" "appetite" "pot"
EDIT 1:
Now that the question has been updated, a more definitive answer is possible.
Data:
x <- c("sər'ka:rəh","sə'lᴔ:nija:","hã:ki:","pu:'dʒa:ẽ:","e:k'sa:r",
"mritko:","dʒʱã:sa:","pə'hũtʃ'ne:'ʋa:le:","kərəpʈ","tʃinhirit",
"tʃʰəʈʈʰi:","dʱũdʱ'la:pən","səmʋitərəɳ","so:'ha:rd",
"məl'ʈi:spe:'ʃijliʈi:", "la:'pər'ʋa:i:","upləbɡʱ")
If you want to match (rather than extract) words that "contain /s/ followed by /r/", you can use grepin various ways. Here are two ways:
grep("s.*r", x, value = T)
or:
grep("(?<=s).*r", x, value = T, perl = T) # with lookbehind
The result is the same in either case:
[1] "sər'ka:rəh" "e:k'sa:r" "səmʋitərəɳ" "so:'ha:rd"
EDIT 2:
If the aim is to match words that "contain /s/ or /p/ followed by /r/ or /t/", you can use the metacharacter | to allow for alternatives:
grep("s.*r|s.*t|p.*r|p.*t", x, value = T)
# or, more succinctly:
grep("(s|p).*(r|t)", x, value = T)
[1] "sər'ka:rəh" "e:k'sa:r" "pə'hũtʃ'ne:'ʋa:le:" "səmʋitərəɳ" "so:'ha:rd"
[6] "la:'pər'ʋa:i:"
You can use grep function. Assuming your list is called list:
grep("p[a-z]+t", list, value=TRUE)

using regular expressions (regex) to make replace multiple patterns at the same time in R

I have a vector of strings and I want to remove -es from all strings (words) ending in either -ses or -ces at the same time. The reason I want to do it at the same time and not consequitively is that sometimes it happens that after removing one ending, the other ending appears while I don't want to apply this pattern to a single word twice.
I have no idea how to use two patterns at the same time, but this is the best I could:
text <- gsub("[sc]+s$", "[sc]", text)
I know the replacement is not correct, but I wonder how can I show that I want to replace it with the letter I just detected (c or s in this case). Thank you in advance.
To remove es at the end of words, that is preceded with s or c, you may use
gsub("([sc])es\\b", "\\1", text)
gsub("(?<=[sc])es\\b", "", text, perl=TRUE)
To remove them at the end of strings, you can go on using your $ anchor:
gsub("([sc])es$", "\\1", text)
gsub("(?<=[sc])es$", "", text, perl=TRUE)
The first gsub TRE pattern is ([sc])es\b: a capturing group #1 that matches either s or c, and then es is matched, and then \b makes sure the next char is not a letter, digit or _. The \1 in the replacement is the backreference to the value stored in the capturing group #1 memory buffer.
In the second example with the PCRE regex (due to perl=TRUE), (?<=[sc]) positive lookbehind is used instead of the ([sc]) capturing group. Lookbehinds are not consuming text, the text they match does not land in the match value, and thus, there is no need to restore it anyhow. The replacement is an empty string.
Strings ending with "ces" and "ses" follow the same pattern, i.e. "*es$"
If I understand it correctly than you don't need two patterns.
Example:
x = c("ces", "ses", "mes)
gsub( pattern = "*([cs])es$", replacement = "\\1", x)
[1] "c" "s" "mes"
Hope it helps.
M

Grep in R to find words with custom "extended" boundaries

I'm looking for a regular expression to grep whole words, including words separated by digits or underscore. \\b considers digits and underscore as parts of words, not as boundaries.
For example, I'd like to catch MOUSE in "DOG MOUSE CAT", in "DOG MOUSE:CAT" but also in "DOG_MOUSE9CAT" and at the end or the beginning of an expression, as in "MOUSE9CAT" and "DOG_MOUSE". Basically, the boundary I'm looking for is any non-uppercase-alpha character plus beginning and end of line/expression (maybe missing some other cases caught by \\b here).
I've tried:
"[[0-9_]\\b]MOUSE[[0-9_]\\b]"
"[[0-9_]|\\b]MOUSE[[0-9_]|\\b]"
"[$|[^A-Z]]MOUSE[^|[^A-Z]]"
"[?<=^|[^A-Z]]MOUSE[?=$|[^A-Z]]"
None of them work.
I'm actually looking for several words (based on a long vector of values), so the final result should look something like
grep(paste("\\b", paste(searchwords, collapse = "\\b|\\b"), "\\b"), targettext)
(with a different delimiter because \\b is too restrictive for me).
(This is a similar question to the one asked by user Nick Sabbe in a comment here: Using grep in R to find strings as whole words (but not strings as part of words))
Use PCRE regex with lookarounds:
grep("(?<![A-Z])MOUSE(?![A-Z])", targettext, perl=TRUE)
See the regex demo
The (?<![A-Z]) negative lookbehind will fail the match if the word is preceded with an uppercase ASCII letter and the negative lookahead (?![A-Z]) will fail the match if the word is followed with an uppercase ASCII letter.
To apply the lookarounds to all the alternatives you have, use an outer grouping (?:...|...).
See the R online demo:
> targettext <- c("DOG MOUSE CAT","DOG MOUSE:CAT","DOG_MOUSE9CAT","MOUSE9CAT","DOG_MOUSE")
> searchwords <- c("MOUSE","FROG")
> grep(paste0("(?<![A-Z])(?:", paste(searchwords, collapse = "|"), ")(?![A-Z])"), targettext, perl=TRUE)
[1] 1 2 3 4 5

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