Where is server.conf file kept openCPU ubuntu - r

Sorry if this is answered elsewhere, or requires a trick.
I have installed openCPU on an ubuntu xenial-16.04 instance. I'd like to lengthen the timelimit.post value as instructed in the /etc/opencpu/server.conf file. Trouble is I can't find it.
ubuntu#ip-x-x-x-x:/usr/lib/opencpu$ ls -a
. .. library rapache scripts

Maybe please check again to see if you don't find /etc/opencpu/server.conf in the expected directory - i.e. because, as above in your output of ls -la /etc/opencpu/, the server.conf file is listed being there. Note though the owner is root so take that into account when you try to open+edit the file.

Related

grpcui: command not found

I am new to grpcui. I've been trying to follow the installation. I did
go get github.com/fullstorydev/grpcui/...
go install github.com/fullstorydev/grpcui/cmd/grpcui
I also added grpcui path to my $PATH. Even tried to pull down the repo and make install. But I keep getting grpcui: command not found. Anyone could help ?
After installation, your grpcui should be in /home/user/go/bin. If so, try and add that folder to your $PATH, as I did (and it worked).
To further Adam's answer, a critical step in updating the PATH is restarting the terminal.
On OSX this needs to be done via exec bash -l. Simply exiting and opening the terminal does not work.
path gist
terminal SO question

Installing packages R (Ubuntu)

I have a problem with R, I haven't experienced before. Before writing here I checked the forums but couldn't solved my problem. I saw somebody experiencing this problem.
First, I use Ubuntu 16.04 and R 3.4.1 (Single candle). But I can not install any packages. First it said the directory is not writeable and if I want to create a personal library?
lib = "/usr/local/lib/R/site-library"' is not writeable Would you like
to use a personal library instead? (y/n)
I couldn't :( I checked forums another option was changing permission, i coded:
1. cd /usr/local/lib/R
2. sudo chmod o+w site-library
3. ls -l but it didn't work.
When I want to download a package, it installs it at /tmp folder. And i can not use it, cause when i want to open it with "library()" it says there is no package like that. I copied the package from the /tmp folder and pasted it to the folder other packages are (i didn't installed them by myself, they were there) but still it doesn't recognize the package.
I didn't experienced this with my windows pc, and a friend with Ubuntu said he is usind R and Rstudio without problem. So what is wrong with mine :( ???
The problem is that r or rstudio doesn't have permission to write inside theses directories.
You should change your R_LIBS for a local directory, take a look in /etc/R/Renviron.site and uncomment the R_LIBS line or define it if needed.
Check if a R folder exists in your home like this ~/R/x86_64-pc-linux-gnu-library/3.4, it should be your R_LIBS address. If it doesn't exist you can create one like ~/R/library/ and define the same in Renviron.site.
More information, check here or help(Startup).

How do I enable python35 from Software Collections at login?

I followed the Software Collections Quick Start and I now have Python 3.5 installed. How can I make it always enabled in my ~/.bashrc, so that I do not have to enable it manually with scl enable rh-python35 bash?
Use the scl_source feature.
Create a new file in /etc/profile.d/ to enable your collection automatically on start up:
$ cat /etc/profile.d/enablepython35.sh
#!/bin/bash
source scl_source enable python35
See How can I make a Red Hat Software Collection persist after a reboot/logout? for background and details.
This answer would be helpful to those who have limited auth access on the server.
I had a similar problem for python3.5 in HostGator's shared hosting. Python3.5 had to be enabled every single damn time after login. Here are my 10 steps for the resolution:
Enable the python through scl script python_enable_3.5 or scl enable rh-python35 bash.
Verify that it's enabled by executing python3.5 --version. This should give you your python version.
Execute which python3.5 to get its path. In my case, it was /opt/rh/rh-python35/root/usr/bin/python3.5. You can use this path to get the version again (just to verify that this path is working for you.)
Awesome, now please exit out of the current shell of scl.
Now, lets get the version again through this complete python3.5 path /opt/rh/rh-python35/root/usr/bin/python3.5 --version.
It won't give you the version but an error. In my case, it was
/opt/rh/rh-python35/root/usr/bin/python3.5: error while loading shared libraries: libpython3.5m.so.rh-python35-1.0: cannot open shared object file: No such file or directory
As mentioned in Tamas' answer, we gotta find that so file. locate doesn't work in shared hosting and you can't install that too.
Use the following command to find where that file is located:
find /opt/rh/rh-python35 -name "libpython3.5m.so.rh-python35-1.0"
Above command would print the complete path (second line) of the file once located. In my case, output was
find: `/opt/rh/rh-python35/root/root': Permission denied
/opt/rh/rh-python35/root/usr/lib64/libpython3.5m.so.rh-python35-1.0
Here is the complete command for the python3.5 to work in such shared hosting which would give the version,
LD_LIBRARY_PATH=/opt/rh/rh-python35/root/usr/lib64 /opt/rh/rh-python35/root/usr/bin/python3.5 --version
Finally, for shorthand, append the following alias in your ~/.bashrc
alias python351='LD_LIBRARY_PATH=/opt/rh/rh-python35/root/usr/lib64 /opt/rh/rh-python35/root/usr/bin/python3.5'
For verification, reload the .bashrc by source ~/.bashrc and execute python351 --version.
Well, there you go, now whenever you login again, you have got python351 to welcome you.
This is not just limited to python3.5, but can be helpful in case of other scl installed softwares.

Preserve files/directories for rpm upgrade in .spec file(rpmbuild)

I wrote a .spec file on RHEL and I am building RPM using rpmbuild. I need ideas on how to handle the situation below.
My RPM creates an empty logs directory when it installs first time within the installation folder like below
/opt/MyInstallation-1.0.0-1/some executables
/opt/MyInstallation-1.0.0-1/lib/carries shared objects(.so files)
/opt/MyInstallation-1.0.0-1/config/carries some XML and custom configuration files(.xml, etc)
/opt/MyInstallation-1.0.0-1/log--->This is where application writes logs
When my RPM upgrades MyInstallation-1.0.0-1, to MyInstallation-1.0.0-2 for example, I get everything right as I wanted.
But, my question is how to preserve log files written in MyInstallation-1.0.0-1? Or to precisely copy the log directory to MyInstallation-1.0.0-2.
I believe if you tag the directory as %config, it is expected that the user will have files in there, so it will leave it alone.
I found a solution or workaround to this by hit and trial method :)
I am using rpmbuild version 4.8.0 on RHEL 6.3 x86_64. I believe it will work on other distros as well.
If you install with one name only like "MyInstallation" rather than "MyInstallation-version number-RPM Build Number" and create "logs directory as a standard directory(no additional flags on it)[See Original Question for scenario] Whenever you upgrade, you normally don't touch logs directory. RPM will leave its contents as it is. All you have to do is to ensure that you keep the line below in the install section.
%install
install --directory $RPM_BUILD_ROOT%{_prefix}/%{name}/log
Here, prefix and name are macros. That has to do nothing with underlying concept.
Regarding config files, the following is a very precise table that will help you guarding your config files. Again, this rule can't be applied on logs our applications create.
http://www-uxsup.csx.cam.ac.uk/~jw35/docs/rpm_config.html
Thanks & Regards.

Automounting riofs in ubuntu

I have several buckets mounted using the awesome riofs and they work great, however I'm at a loss trying to get them to mount after a reboot. I have tried entering in the following to my /etc/fstab with no luck:
riofs#bucket-name /mnt/bucket-name fuse _netdev,allow_other,nonempty,config=/path/to/riofs.conf.xml 0 0
I have also tried adding a startup script to run the riofs commands to my rc.local file but that too fails to mount them.
Any idea's or recommendations?
Currently RioFS does not support fstab. In order to mount remote bucket at the startup time, consider adding corresponding command line to your startup script (rc.local, as you mentioned).
If for some reason it fails to start RioFS from startup script, please feel free to contact developers and/or fill issue report.
If you enter your access key and secret access key in the riofs config xml file, then you should be able to mount this via fstab or an init.d or rc.local script ..
See this thread
EDIT:
I tested this myself and this is what I find. Even with the AWS access details specified in the config file, there is no auto-matic mounting at boot. But to access the system, all one needs to do is to issue mount /mount/point/in-fstab .. and the fstab directive would work and persist like a standard fstab mounted filesystem.
So, it seems the riofs system is not ready at that stage of the boot process when filesystems are mounted. That's the only logical reason I can find so far. This can be solved with an rc.local or init.d script that just issues a mount command (at the worst)
But riofs does work well, even as the documentation seems sparse. It is certainly more reliable and less buggy than s3fs ..
Thanks all,
I was able to get them auto-mounting from rc.local with the syntax similar to:
sudo riofs --uid=33 --gid=33 --fmode=0777 --dmode=0777 -o "allow_other" -c ~/.config/riofs/riofs.conf.xml Bucket-Name /mnt/mountpoint
Thanks again!

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