RWeka installation under Rstudio on Mac - r

I tried to find solutions from previous posts, but they do not solve my problem.
I am using macOS High Sierra and have Java installed. Below is the error reported by Rstudio. Also, rJava, Mac, and R are really messy with each other. I found this post but still does not work.
https://github.com/MTFA/CohortEx/wiki/Run-rJava-with-RStudio-under-OSX-10.10,-10.11-(El-Capitan)-or-10.12-(Sierra)
///////////////////
library(RWeka)
Error: package or namespace load failed for ‘RWeka’:
.onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so, 6): Library not loaded: #rpath/libjvm.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so
Reason: image not found
In addition: Warning message:
package ‘RWeka’ was built under R version 3.4.4

I met the same question and I found this is helpful.
Cannot load R xlsx package on Mac OS 10.11
1.In terminal enter the following to relink Java correctly:
sudo R CMD javareconf
2.Back in R (or RStudio) install the rJava package from source:
install.packages("rJava",type='source')
Then
library(rJava)
and
library(RWeka)
should work.

Related

error message trying to install homals package in R

I'm trying to install the Homals package - library(homals), but keep getting this error message:
library(homals)
Error : .onLoad failed in loadNamespace() for 'rgl', details: call:
dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared
object
'/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rgl/libs/rgl.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rgl/libs/rgl.so,
6): Library not loaded: /opt/X11/lib/libGLU.1.dylib Referenced from:
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rgl/libs/rgl.so
Reason: image not found Error: package or namespace load failed for
‘homals’
I have a couple of my colleagues to run the same code, the same thing happens. I have re-install R studio to the newest version.
install.packages("rgl")
install.packages("homals")
library(homals)
Any solutions for this? thank you.
I was able to successfully install on both Windows and Mac. I believe the root cause here is that you have R version 3.3 installed when you require at least v3.5.3 as per below:
library(homals)
Warning message:
package ‘homals’ was built under R version 3.5.3

Incompatible library version RSiena

I'm trying to load the RSiena package into R, but keep getting this error message:
Error: package or namespace load failed for ‘RSiena’:
.onLoad failed in loadNamespace() for 'tcltk', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/tcltk/libs/tcltk.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/tcltk/libs/tcltk.so, 10): Library not loaded: /opt/X11/lib/libfontconfig.1.dylib
Referenced from: /usr/local/lib/libtk8.6.dylib
Reason: Incompatible library version: libtk8.6.dylib requires version 11.0.0 or later, but libfontconfig.1.dylib provides version 10.0.0
I tried installing three ways:
install.packages("RSiena") , install.packages("RSiena", repos="http://R-Forge.R-project.org") , and installing straight from tgz file (from https://cran.r-project.org/web/packages/RSiena/index.html).
The first two installation methods do not give any error and say The downloaded binary packages are in /var/folders/mk/__r_sbzn5mx88x04mrlycsg00000gq/T//RtmpbxlMY8/downloaded_packages.The third option gives this message Error in install.packages : type == "both" cannot be used with 'repos = NULL'
None allow me to load the package. I'm working with R version 3.4.3 (2017-11-30) in RStudio Version 1.1.423 on Mac OS X El Capitan (version 10.11.6).
I've tried uninstalling and reinstalling. I'm not sure how else to troubleshoot this issue.
The most recent version (RSiena v.1.2.26) of rsiena addresses tcltk issues, and is now available on Github here: https://github.com/snlab-nl/rsiena.
SOLUTION. I installed XQuartz from xquartz.macosforge.org and now the package loads successfully.

Error when trying to load XLConnect Package

After updating to the latest version of Rstudio (R version 3.4.1 (2017-06-30) -- "Single Candle") I cannot seem to get the XLConnect Package to load. This is the error message I get:
> library('XLConnect')
Loading required package: XLConnectJars
Error: package or namespace load failed for ‘XLConnectJars’:.onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so, 6): Library not loaded: #rpath/libjvm.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/rJava/libs/rJava.so
Reason: image not found
Error: package ‘XLConnectJars’ could not be loaded
R also throws a similar error message when I try to load the rJava package as well. I have tried uninstalling both Java and R and have scoured SO for answers, but nothing seems to work.
I am running macOS Sierra (10.12.6)
Would anyone be willing to offer any help?
The error suggests that there is an issue loading rJava. Try updating the Java configuration variables via R CMD javareconf or sudo R CMD javareconf.

'ChemoSpec' package in R not working on mac OS X

I'm trying to install an R package called ChemoSpec and am receiving the following error:
Error : .onLoad failed in loadNamespace() for 'rgl', details: call:
dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared
object
'/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rgl/libs/rgl.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rgl/libs/rgl.so,
6): Library not loaded: /opt/X11/lib/libGLU.1.dylib Referenced from:
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rgl/libs/rgl.so
Reason: image not found Error: package or namespace load failed for
‘ChemoSpec’
I'm running R version 3.3 using R Studio on OS X 10.10.5
Any help would be great! Thanks.
The problem is almost certainly that you do not have X11 installed. This in turn prevents rgl from installing, and in turn, ChemoSpec. Macs used to ship with X11 installed, but since OSX 10.6 they have not (info). You can install X11 from here. After that, try:
install.packages("rgl")
and if that is successful, do:
install.packages("ChemoSpec")
and you should be ready to go.

Using Rattle on Mac OS X Yosemite 10.10.5

I am having trouble loading rattle on my mac, I have been pushed around to download X11 but cant seem to find a working page.
When trying to invoke rattle with the simple
library(rattle)
It has a popup about X11 and continue brings you yo this link https://support.apple.com/en-us/HT201341.
And I get this when trying to use the Rcmdr work around
library(Rcmdr)
Error : .onLoad failed in loadNamespace() for 'tcltk', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/tcltk/libs/tcltk.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.2/Resources/library/tcltk/libs/tcltk.so, 10): Library not loaded: /opt/X11/lib/libX11.6.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/3.2/Resources/library/tcltk/libs/tcltk.so
Reason: image not found
In addition: Warning message:
running command ''/usr/bin/otool' -L '/Library/Frameworks/R.framework/Resources/library/tcltk/libs//tcltk.so'' had status 1
Error: package or namespace load failed for ‘Rcmdr’
xcode-select: note: no developer tools were found at '/Applications/Xcode.app', requesting install. Choose an option in the dialog to download the command line developer tools.
library(Rcmdr)
Error : .onLoad failed in loadNamespace() for 'tcltk', details:
call: fun(libname, pkgname)
error: X11 library is missing: install XQuartz from xquartz.macosforge.org
Error: package or namespace load failed for ‘Rcmdr’
install.packages("XQuartz")
--- Please select a CRAN mirror for use in this session ---
Warning message:
package ‘XQuartz’ is not available (for R version 3.2.1)
install.packages("tcltk")
Warning message:
package ‘tcltk’ is not available (for R version 3.2.1)
Any help here on getting Rattle to load with OS X Yosemite?
XQuartz isn't an R package, but rather an implementation of the X11 windowing system for Mac OS X. You need to install XQuartz to use the tcltk package in R, on which the Rcmdr depends, under Mac OS X.
See the Rcmdr installation notes for Mac OS X.
I hope this helps,
John

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