RShiny diplaying multiple csvs which were uploaded in different manners - r

I have been referencing the following post which has been tremendously helpful in helping me understand Rshiny functionality:
How can I update plot from rhandsontable with uploaded data, without clicking into the table first?
I am still having some trouble grasping the concept of "Observe" so that may be the issue here. I want to upload 2 csvs where one is static (saving it in a separate tab) and one that can be edited (with edits reflected in the corresponding plot after hitting a button). My end goal is to be able to plot these data sets together on the same axes, but for now, I am having difficulty getting my table display which makes me think it's not uploading properly. I am using the following code:
library(shiny)
library(rhandsontable)
#sample data
year <- substr(Sys.Date(),1,4)
empty_dat=as.data.frame(matrix(1,nrow = 3,ncol = 4,dimnames = list(c("Cat A", "Cat B", "Cat C"),
c(paste("May",year),paste("June",year),paste("July",year),
paste("August",year)))))
ui = fluidPage(sidebarLayout(
sidebarPanel(
#static data input
fileInput('file1_new', 'Choose CSV File'),
#reactive data inut
fileInput('file1', 'Choose CSV File'),
#display reactive data
rHandsontableOutput('contents'),
actionButton("go", "Plot Update"),
width=7
),
mainPanel(
tabsetPanel(
#plot reactive data first tab
tabPanel("Plot", plotOutput("plot1")),
#table static data second tab
tabPanel("Table", tableOutput("table"))
)
)
))
server = function(input, output) {
#static input
output$table <- renderTable({
inFile <- input$file_new
if (is.null(inFile))
return(NULL)
read.csv(inFile$datapath, header = input$header,
sep = input$sep, quote = input$quote)
})
indat <- reactiveValues(data=empty_dat)
#reactive input
observe({
inFile = input$file1
if (is.null(inFile))
return(NULL)
data1 = read.csv(inFile$datapath)
indat$data <- data1
})
observe({
if(!is.null(input$contents))
indat$data <- hot_to_r(input$contents)
})
output$contents <- renderRHandsontable({
rhandsontable(indat$data)
})
#***example uses only one column-why I attempt multiple columns (indat$data[,1:4],indat$data[],indat$data) I get an error
#update data when user hits button
test <- eventReactive(input$go, {
return(indat$data[,3])
})
output$plot1 <- renderPlot({
#plot updated data
plot(test(),type = "l")
})
}
shinyApp(ui, server)
Any help would be greatly appreciated.

I made few changes to the code, and now the second tab displays the static table.
I am not sure if this is what you want but here's the code. The changes that I made are below the code.
library(shiny)
library(rhandsontable)
#sample data
year <- substr(Sys.Date(),1,4)
empty_dat=as.data.frame(matrix(1,nrow = 3,ncol = 4,dimnames = list(c("Cat A", "Cat B", "Cat C"),
c(paste("May",year),paste("June",year),paste("July",year),
paste("August",year)))))
ui = fluidPage(sidebarLayout(
sidebarPanel(
#static data input
fileInput('file1_new', 'Choose CSV File'),
#reactive data inut
fileInput('file1', 'Choose CSV File'),
#display reactive data
rHandsontableOutput('contents'),
actionButton("go", "Plot Update"),
width=7
),
mainPanel(
tabsetPanel(
#plot reactive data first tab
tabPanel("Plot", plotOutput("plot1")),
#table static data second tab
tabPanel("Table", tableOutput("table"))
)
)
))
server = function(input, output) {
#static input
output$table <- renderTable({
inFile <- input$file1_new
if (is.null(inFile))
{return(mtcars)}
else{
read.csv(inFile$datapath)}
})
indat <- reactiveValues(data=empty_dat)
#reactive input
observe({
inFile = input$file1
if (is.null(inFile))
return(NULL)
data1 = read.csv(inFile$datapath)
indat$data <- data1
})
observe({
if(!is.null(input$contents))
indat$data <- hot_to_r(input$contents)
})
output$contents <- renderRHandsontable({
rhandsontable(indat$data)
})
#***example uses only one column-why I attempt multiple columns (indat$data[,1:4],indat$data[],indat$data) I get an error
#update data when user hits button
test <- eventReactive(input$go, {
return(indat$data[,3])
})
output$plot1 <- renderPlot({
#plot updated data
plot(test(),type = "l")
})
}
shinyApp(ui, server)
So in the part where you do the renderTable, the variable name was slightly wrong :p, and in the read.csv, there were too many arguments.
output$table <- renderTable({
inFile <- input$file1_new
if (is.null(inFile))
{return(mtcars)}
else{
read.csv(inFile$datapath)}
})
Please let me know if this works for you... Cheers!

Related

How to update the choices in a Shiny selectInput after loading a file? [duplicate]

I have a Shiny app that includes a number of dropdown selection boxes, the values of which are filled from reading an RDS file. The app also includes a fileInput function to upload new data. How can I change the values in the dropdown boxes to reflect the new data? Currently I can see that the data is uploaded, but the old data remains in the dropdown.
The data that should be uploaded is saved to a file using
saveRDS( data.frame(names=c("Jill","Jane","Megan")),"myDataFrame.rds")
In my app.R file, I first define the 'default' value of the data:
myDataFrame <- data.frame(names=c("Tom","Dick","Harry"))
The content of my app.R is as follows:
library(shiny)
ui <- shinyUI(
fluidPage(
fileInput('file1', 'Choose file to upload',accept = ".rds"),
selectInput("myNames","Names",myDataFrame$names),
tableOutput('contents')
)
)
server <- shinyServer(function(input, output) {
output$contents <- renderTable({
inFile <- input$file1
if (is.null(inFile)) { return(myDataFrame) }
readRDS(inFile$datapath)
})
})
The initial view of the application is as expected: both the dropdown and the table contain the 'default' names. Upon upload of my RDS file containing a new dataframe, the table changes (which is what I was looking for) but the dropdown values do not. How can I make the latter happen?
I added reactive object myData that you have to use for table contents, but more importantly to update choices in selectInput (check observe and updateSelectInput part).
library(shiny)
ui <- shinyUI(
fluidPage(
fileInput("file1", "Choose file to upload", accept = ".rds"),
selectInput("myNames","Names", ""),
tableOutput("contents")
)
)
server <- function(input, output, session) {
myData <- reactive({
inFile <- input$file1
if (is.null(inFile)) {
d <- myDataFrame
} else {
d <- readRDS(inFile$datapath)
}
d
})
output$contents <- renderTable({
myData()
})
observe({
updateSelectInput(session, "myNames",
label = "myNames",
choices = myData()$names,
selected = myData()$names[1])
})
}
shinyApp(ui, server)
to riff off of #PoGibas' answer, I needed to load multiple list values for an app, here is a similar application using reactiveValues and observeEvent :
library(shiny)
# save a dummy RDS for loading
saveRDS(list(names=LETTERS,numbers=seq(10)),'dummy.rds')
# define initial values
myDataList <- list(names=c("Tom","Dick","Harry"), numbers=seq(5))
ui <- shinyUI(
fluidPage(
fileInput("file1", "Choose file to upload", accept = ".rds"),
selectInput("myNames","Names", ""),
selectInput("myNumbers","Numbers", ""),
tableOutput("contents")
)
)
server <- function(input, output, session) {
md <- reactiveValues(
names = myDataList$names,
numbers = myDataList$numbers
)
observeEvent(input$file1,{
d <- readRDS(input$file1$datapath)
for (n in names(d)){
md[[n]] <- d[[n]]
}
})
output$contents <- renderTable({
data.frame(data = c(md$names,md$numbers))
})
observe({
updateSelectInput(session, "myNames",
label = "myNames",
choices = md$names,
selected = md$names[1])
updateSelectInput(session, "myNumbers",
label = "myNumbers",
choices = md$numbers,
selected = md$numbers[1])
})
}
shinyApp(ui, server)

Gives Error:object of type 'closure' is not subsettable after using reactive function [duplicate]

I have a Shiny app that includes a number of dropdown selection boxes, the values of which are filled from reading an RDS file. The app also includes a fileInput function to upload new data. How can I change the values in the dropdown boxes to reflect the new data? Currently I can see that the data is uploaded, but the old data remains in the dropdown.
The data that should be uploaded is saved to a file using
saveRDS( data.frame(names=c("Jill","Jane","Megan")),"myDataFrame.rds")
In my app.R file, I first define the 'default' value of the data:
myDataFrame <- data.frame(names=c("Tom","Dick","Harry"))
The content of my app.R is as follows:
library(shiny)
ui <- shinyUI(
fluidPage(
fileInput('file1', 'Choose file to upload',accept = ".rds"),
selectInput("myNames","Names",myDataFrame$names),
tableOutput('contents')
)
)
server <- shinyServer(function(input, output) {
output$contents <- renderTable({
inFile <- input$file1
if (is.null(inFile)) { return(myDataFrame) }
readRDS(inFile$datapath)
})
})
The initial view of the application is as expected: both the dropdown and the table contain the 'default' names. Upon upload of my RDS file containing a new dataframe, the table changes (which is what I was looking for) but the dropdown values do not. How can I make the latter happen?
I added reactive object myData that you have to use for table contents, but more importantly to update choices in selectInput (check observe and updateSelectInput part).
library(shiny)
ui <- shinyUI(
fluidPage(
fileInput("file1", "Choose file to upload", accept = ".rds"),
selectInput("myNames","Names", ""),
tableOutput("contents")
)
)
server <- function(input, output, session) {
myData <- reactive({
inFile <- input$file1
if (is.null(inFile)) {
d <- myDataFrame
} else {
d <- readRDS(inFile$datapath)
}
d
})
output$contents <- renderTable({
myData()
})
observe({
updateSelectInput(session, "myNames",
label = "myNames",
choices = myData()$names,
selected = myData()$names[1])
})
}
shinyApp(ui, server)
to riff off of #PoGibas' answer, I needed to load multiple list values for an app, here is a similar application using reactiveValues and observeEvent :
library(shiny)
# save a dummy RDS for loading
saveRDS(list(names=LETTERS,numbers=seq(10)),'dummy.rds')
# define initial values
myDataList <- list(names=c("Tom","Dick","Harry"), numbers=seq(5))
ui <- shinyUI(
fluidPage(
fileInput("file1", "Choose file to upload", accept = ".rds"),
selectInput("myNames","Names", ""),
selectInput("myNumbers","Numbers", ""),
tableOutput("contents")
)
)
server <- function(input, output, session) {
md <- reactiveValues(
names = myDataList$names,
numbers = myDataList$numbers
)
observeEvent(input$file1,{
d <- readRDS(input$file1$datapath)
for (n in names(d)){
md[[n]] <- d[[n]]
}
})
output$contents <- renderTable({
data.frame(data = c(md$names,md$numbers))
})
observe({
updateSelectInput(session, "myNames",
label = "myNames",
choices = md$names,
selected = md$names[1])
updateSelectInput(session, "myNumbers",
label = "myNumbers",
choices = md$numbers,
selected = md$numbers[1])
})
}
shinyApp(ui, server)

Warning in summary(as.numeric(paste(input$to, "input$to"))) : NAs introduced by coercion in Shiny with R

I am very new to Shiny web app with R. I want to generate summary according to choice from checkboxGroupInput which i generated dynamically when browsing the CSV file. My problem is that when i want to convert from String to numeric that time it prints NA.
I am uploading my two files which are ui.r and server.r. I am trying since two days. If anyone help me then it will be very beneficial for me.
If i did anything wrong in my code then please suggest me right way.
ui.r
library(shiny)
library(shinythemes)
shinyUI(fluidPage(
theme = shinytheme("cyborg"),
themeSelector(),
# Application title
titlePanel("Data Analytics and Visualization Dashboard"),
sidebarLayout(
sidebarPanel(
fileInput('datafile', 'Choose CSV file',accept=c('text/csv', 'text/comma-
separated-values,text/plain')),
h5("Max file size to upload is 5 MB."),
radioButtons("sep", "Seperator", choices = c(Comma = ',', semicolon = ';',
tab = "\t", space = " " )),
#checkboxInput("header", "Header?")
br(),
h4("Select columns from CSV"),
uiOutput("toCol"),
br(),
h4("Summary"),
textOutput("sum")
# tableOutput("disp")
),
mainPanel(
numericInput("obs", "Enter the number of rows to display:", 5),
tableOutput("input_file"),
plotOutput("p")
)
)
))
server.r
library(shiny)
shinyServer(function(input, output,session) {
#This function is repsonsible for reading a csv file
output$input_file <- renderTable({
file_to_read = input$datafile
if(is.null(file_to_read))
{
return()
}
read.csv(file_to_read$datapath, sep = input$sep, nrows = input$obs))
})
#This function is repsonsible for loading in the selected file
filedata <- reactive({
infile <- input$datafile
if (is.null(infile)) {
# User has not uploaded a file yet
return(NULL)
}
read.csv(infile$datapath,nrows = input$obs)
})
#The following set of functions populate the column selectors
output$toCol <- renderUI({
df <-filedata()
if (is.null(df)) return(NULL)
items=names(df)
names(items)=items
checkboxGroupInput("to", "Columns",items)
})
observe({
# db <- gsub(",","",input$to)
# print(db)
# paste( intToUtf8(160), input$to, intToUtf8(160))
# print(summary(as.numeric(as.character( paste( " ", input$to, "
#"))))) })
print(summary(as.numeric( input$to) ))})
# output$sum <- renderPrint({
# summary(input$data.frame[,as.numeric(input$var)])
# })
# output$disp <- renderTable({
# input$to
# })
# output$summary1 <- renderPrint({
# sum <- as.numeric(as.character(input$to))
# summary(sum)
#})
})
This could be a starting point, although I dont recommend using this for a productive app, as the login-process is not really safe nor encrypted. It is based solely on text-data.
But you will have to put the ui in the server and render the page depending on the login status. So there are 2 renderUI but just 1 server-function. I dont know if you can have 2 different server-functions and redirect them. I think it all has to be in 1 server-function.
library(shiny)
username = "joe"
password = "joe123"
ui <- fluidPage(
uiOutput("ui")
)
server <- function(input, output, session) {
LOGGED <- reactiveValues(user = FALSE)
observeEvent(input$action, {
if ((input$name == username ) & (input$pass == password)) {
LOGGED$user = TRUE
} else {
LOGGED$user = FALSE
}
})
observe({
if (LOGGED$user == FALSE) {
output$ui <- renderUI({
tagList(
p(HTML("User is joe <br> and password is joe123")),
textInput("name", "Enter your username"),
passwordInput("pass", "Enter your password"),
actionButton("action", label = "Action")
)
})
} else if (LOGGED$user == TRUE) {
output$ui <- renderUI({
tagList(
h1("You are logged in.")
)
})
}
})
}
shinyApp(ui, server)
Like #Codeer said, there is no line in your code like this one summary(as.numeric(paste(input$to, “input$to”))). I edited your code, so all the uncommented lines dont appear, as its not necessary to show them.
In your example, your loading the csv file twice, which you can definitly avoid.
I moved the csv-loading into the reactive only. Then you can access the loaded file everywhere in your shiny-app. And i think in your print(summary()) statement, you're missing the data, as your only printing out the summary of the input$tovariable, which is only text and if you convert it to numeric you create NA-values.
So i rearranged your code a bit, and I think its behaving the way you intend it to.
library(shiny)
library(shinythemes)
ui <- {shinyUI(fluidPage(
theme = shinytheme("cyborg"),
themeSelector(),
titlePanel("Data Analytics and Visualization Dashboard"),
sidebarLayout(
sidebarPanel(
fileInput('datafile', 'Choose CSV file',accept=c('text/csv', 'text/comma-
separated-values,text/plain')),
h5("Max file size to upload is 5 MB."),
radioButtons("sep", "Seperator", choices = c(Comma = ',', semicolon = ';',
tab = "\t", space = " " )),
br(),
h4("Select columns from CSV"),
uiOutput("toCol"),
br(),
h4("Summary"),
textOutput("sum")
),
mainPanel(
numericInput("obs", "Enter the number of rows to display:", 5),
tableOutput("input_file"),
verbatimTextOutput("summary"),
plotOutput("p")
)
)
))}
server <- shinyServer(function(input, output,session) {
#This function is repsonsible for loading and reading a csv file
filedata <- reactive({
req(input$datafile)
infile <- input$datafile
if (is.null(infile)) {
# User has not uploaded a file yet
return(NULL)
}
read.csv(infile$datapath,nrows = input$obs, sep = input$sep)
})
output$input_file <- renderTable({
filedata()
})
#The following set of functions populate the column selectors
output$toCol <- renderUI({
df <- filedata()
if (is.null(df)) return(NULL)
items=names(df)
names(items)=items
checkboxGroupInput("to", "Columns",items)
})
output$summary <- renderPrint({
req(input$to)
data <- filedata()
print(summary(data[,input$to]))
})
})
shinyApp(ui, server)
The csv file is loaded in the reactive (filedata). In the renderTable, you just enter the reactive variable - filedata(). And in the observe, you call again the reactive variable and only print out the summary of the data in the clicked column (input$to).

Update Shiny's 'selectInput' dropdown with new values after uploading new data using fileInput

I have a Shiny app that includes a number of dropdown selection boxes, the values of which are filled from reading an RDS file. The app also includes a fileInput function to upload new data. How can I change the values in the dropdown boxes to reflect the new data? Currently I can see that the data is uploaded, but the old data remains in the dropdown.
The data that should be uploaded is saved to a file using
saveRDS( data.frame(names=c("Jill","Jane","Megan")),"myDataFrame.rds")
In my app.R file, I first define the 'default' value of the data:
myDataFrame <- data.frame(names=c("Tom","Dick","Harry"))
The content of my app.R is as follows:
library(shiny)
ui <- shinyUI(
fluidPage(
fileInput('file1', 'Choose file to upload',accept = ".rds"),
selectInput("myNames","Names",myDataFrame$names),
tableOutput('contents')
)
)
server <- shinyServer(function(input, output) {
output$contents <- renderTable({
inFile <- input$file1
if (is.null(inFile)) { return(myDataFrame) }
readRDS(inFile$datapath)
})
})
The initial view of the application is as expected: both the dropdown and the table contain the 'default' names. Upon upload of my RDS file containing a new dataframe, the table changes (which is what I was looking for) but the dropdown values do not. How can I make the latter happen?
I added reactive object myData that you have to use for table contents, but more importantly to update choices in selectInput (check observe and updateSelectInput part).
library(shiny)
ui <- shinyUI(
fluidPage(
fileInput("file1", "Choose file to upload", accept = ".rds"),
selectInput("myNames","Names", ""),
tableOutput("contents")
)
)
server <- function(input, output, session) {
myData <- reactive({
inFile <- input$file1
if (is.null(inFile)) {
d <- myDataFrame
} else {
d <- readRDS(inFile$datapath)
}
d
})
output$contents <- renderTable({
myData()
})
observe({
updateSelectInput(session, "myNames",
label = "myNames",
choices = myData()$names,
selected = myData()$names[1])
})
}
shinyApp(ui, server)
to riff off of #PoGibas' answer, I needed to load multiple list values for an app, here is a similar application using reactiveValues and observeEvent :
library(shiny)
# save a dummy RDS for loading
saveRDS(list(names=LETTERS,numbers=seq(10)),'dummy.rds')
# define initial values
myDataList <- list(names=c("Tom","Dick","Harry"), numbers=seq(5))
ui <- shinyUI(
fluidPage(
fileInput("file1", "Choose file to upload", accept = ".rds"),
selectInput("myNames","Names", ""),
selectInput("myNumbers","Numbers", ""),
tableOutput("contents")
)
)
server <- function(input, output, session) {
md <- reactiveValues(
names = myDataList$names,
numbers = myDataList$numbers
)
observeEvent(input$file1,{
d <- readRDS(input$file1$datapath)
for (n in names(d)){
md[[n]] <- d[[n]]
}
})
output$contents <- renderTable({
data.frame(data = c(md$names,md$numbers))
})
observe({
updateSelectInput(session, "myNames",
label = "myNames",
choices = md$names,
selected = md$names[1])
updateSelectInput(session, "myNumbers",
label = "myNumbers",
choices = md$numbers,
selected = md$numbers[1])
})
}
shinyApp(ui, server)

dealing with an input dataset in R Shiny

I'm new to R-Shiny and my question might be very simple. After hours of thinking and searching, I couldn't solve the issue. Here is the problem:
1) My app asks user to upload his dataset.
2) Then in the server file, I read the dataset and I did some analyses and I report back the results into the user interface.
3)My user interface has 4 different out puts.
4) I read the dataset in the "render" function of each output. ISSUE: by doing so, the data is locally defined in the scope of each function which means that I need to read it over again for each output.
5) This is very in-efficient, Is there any alternative? using reactive ?
6) Below is a sample code showing how I wrote my server.R:
shinyServer(function(input, output) {
# Interactive UI's:
# %Completion
output$myPlot1 <- renderPlot({
inFile <- input$file
if (is.null(inFile)) return(NULL)
data <- read.csv(inFile$datapath, header = TRUE)
# I use the data and generate a plot here
})
output$myPlot2 <- renderPlot({
inFile <- input$file
if (is.null(inFile)) return(NULL)
data <- read.csv(inFile$datapath, header = TRUE)
# I use the data and generate a plot here
})
})
How can I just get the input data once and just use the data in my output functions ?
Thanks very much,
You can call the data from the file in a reactive function. It can then be accessed for example as
myData() in other reactive functions:
library(shiny)
write.csv(data.frame(a = 1:10, b = letters[1:10]), 'test.csv')
runApp(list(ui = fluidPage(
titlePanel("Uploading Files"),
sidebarLayout(
sidebarPanel(
fileInput('file1', 'Choose CSV File',
accept=c('text/csv',
'text/comma-separated-values,text/plain',
'.csv'))
),
mainPanel(
tableOutput('contents')
)
)
)
, server = function(input, output, session){
myData <- reactive({
inFile <- input$file1
if (is.null(inFile)) return(NULL)
data <- read.csv(inFile$datapath, header = TRUE)
data
})
output$contents <- renderTable({
myData()
})
}
)
)

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