The sever send SYN/ACK after receive SYN from client immediately - tcp

I found the request from client timeout sometimes. And I use tcpdump on the server side to catch some special tcp packet as follows. It seems no packet was lost. Why the server doesn't reply to client after receiving the first SYN?
enter image description here
netstat -n | awk '/^tcp/ {++S[$NF]} END {for(a in S) print a, S[a]}'
SYN_RECV 220
CLOSE_WAIT 1
ESTABLISHED 496
FIN_WAIT1 42
FIN_WAIT2 2
TIME_WAIT 72588
sysctl -a | grep tcp
net.ipv4.tcp_abort_on_overflow = 0
net.ipv4.tcp_adv_win_scale = 1
net.ipv4.tcp_allowed_congestion_control = cubic reno
net.ipv4.tcp_app_win = 31
net.ipv4.tcp_available_congestion_control = cubic reno
net.ipv4.tcp_base_mss = 512
net.ipv4.tcp_challenge_ack_limit = 100
net.ipv4.tcp_congestion_control = cubic
net.ipv4.tcp_dsack = 1
net.ipv4.tcp_early_retrans = 3
net.ipv4.tcp_ecn = 2
net.ipv4.tcp_fack = 1
net.ipv4.tcp_fastopen = 0
net.ipv4.tcp_fastopen_key = fc1980cc-2a3369bf-91223671-bb8e012f
net.ipv4.tcp_fin_timeout = 60
net.ipv4.tcp_frto = 2
net.ipv4.tcp_init_cwnd = 10
net.ipv4.tcp_keepalive_intvl = 75
net.ipv4.tcp_keepalive_probes = 9
net.ipv4.tcp_keepalive_time = 7200
net.ipv4.tcp_limit_output_bytes = 131072
net.ipv4.tcp_loss_init_cwnd = 1
net.ipv4.tcp_low_latency = 0
net.ipv4.tcp_max_orphans = 524288
net.ipv4.tcp_max_ssthresh = 0
net.ipv4.tcp_max_syn_backlog = 8192
net.ipv4.tcp_max_tw_buckets = 524288
net.ipv4.tcp_mem = 761319 1015094 1522638
net.ipv4.tcp_min_tso_segs = 2
net.ipv4.tcp_moderate_rcvbuf = 1
net.ipv4.tcp_mtu_probing = 0
net.ipv4.tcp_no_delay_ack = 0
net.ipv4.tcp_no_metrics_save = 0
net.ipv4.tcp_orphan_retries = 0
net.ipv4.tcp_reordering = 3
net.ipv4.tcp_retrans_collapse = 1
net.ipv4.tcp_retries1 = 3
net.ipv4.tcp_retries2 = 15
net.ipv4.tcp_rfc1337 = 0
net.ipv4.tcp_rmem = 4096 87380 6291456
net.ipv4.tcp_sack = 1
net.ipv4.tcp_slow_start_after_idle = 1
net.ipv4.tcp_stdurg = 0
net.ipv4.tcp_syn_retries = 6
net.ipv4.tcp_synack_retries = 5
net.ipv4.tcp_syncookies = 1
net.ipv4.tcp_thin_dupack = 0
net.ipv4.tcp_thin_linear_timeouts = 0
net.ipv4.tcp_timestamps = 1
net.ipv4.tcp_tso_win_divisor = 3
net.ipv4.tcp_tw_ignore_syn_tsval_zero = 1
net.ipv4.tcp_tw_recycle = 1
net.ipv4.tcp_tw_recycle_private_only = 0
net.ipv4.tcp_tw_reuse = 1
net.ipv4.tcp_window_scaling = 1
net.ipv4.tcp_wmem = 4096 16384 4194304
net.ipv4.tcp_workaround_signed_windows = 0
I had try to set tcp_tw_reuse tcp_tw_recycle and increase tcp_max_syn_backlog .There still error: error=HTTP 599: Timeout while connecting,headers=tornado.httputil.HTTPHeaders object at 0x7f74ed884860,reason='Unknown'

Maybe the TCP connection backlog of the server is full.
man page of listen says:
if the underlying protocol supports
retransmission, the request may be ignored so that a later reattempt
at connection succeeds.
Try to increase backlog parameter value of listen() call of the server.

Related

UpSetR error when using queries: replacement has 1 row, data has 0

I have tried to use UpsetR to visualize the input file which can be found here
> library("UpSetR")
> orthogroups_df<- read.table("orthogroups.GeneCount.tsv", header=T, stringsAsFactors = F)
> #All species
> selected_species <- colnames(orthogroups_df)[2:(ncol(orthogroups_df) -1)]
> selected_species
[1] "Atha" "Cann" "NQLD" "Natt" "Ngla" "Nlab" "Nsyl" "Ntab" "Ntom" "Slyc" "Stub" "Vvin"
> head(orthogroups_df)
Orthogroup Atha Cann NQLD Natt Ngla Nlab Nsyl Ntab Ntom Slyc Stub Vvin Total
1 OG0000000 0 0 965 0 0 3 0 0 0 0 0 0 968
2 OG0000001 0 1 3 0 0 448 0 0 0 0 0 0 452
3 OG0000002 0 1 313 0 0 120 1 0 1 0 0 0 436
4 OG0000003 0 93 15 21 46 16 33 63 36 25 39 26 413
5 OG0000004 1 42 2 34 109 6 8 154 11 9 4 0 380
6 OG0000005 0 2 61 1 34 44 91 70 43 20 1 0 367
> ncol(orthogroups_df)
[1] 14
> orthogroups_df[orthogroups_df > 0] <- 1
> upset(orthogroups_df,
+ nsets = ncol(orthogroups_df),
+ sets = rev(c(selected_species)),
+ queries = list(list(query = intersects, params = list("NQLD", "Nlab", "Nsyl"), color = "#238c45", active = T),
+ list(query = intersects, params = list("NQLD", "Nlab"), color = "#ffd977", active = T)))
Error in `$<-.data.frame`(`*tmp*`, "freq", value = 45L) :
replacement has 1 row, data has 0
How is it possible to fix the above error?
We need to set the number of intersects - nintersects - to a higher number so that sets in query params can be shown.
By default nintersects is set to 40, and list("NQLD", "Nlab", "Nsyl") appears after 40 at 90th position, so we need a bigger number, here I tried with 90:
upset(orthogroups_df,
nsets = ncol(orthogroups_df),
sets = rev(c(selected_species)),
nintersects = 90,
queries = list(
list(query = intersects,
params = list("NQLD", "Nlab", "Nsyl"),
color = "red",
active = TRUE),
list(query = intersects,
params = list("NQLD", "Nlab"),
color = "blue",
active = TRUE)))

Slow query in MariaDB-10.5.15, fetching time, with a simple select

I'm having a problem with a slow query in MariaDB, which is driving me crazy, and it's X-file worthy.
I have a simple table, which I show you below, with only 10 rows, and the time it takes to return a simple select * from the table is more than 180 seconds !!!!
I provide the following data to see if you see something strange and you can help me:
a) The structure of the table, to highlight the mediumblog field where an image is saved.
b) mysql slow_query output.
c) Global variables.
a) Table structure
CREATE TABLE `clientespendientes` (
`numeroid` varchar(40) NOT NULL DEFAULT '' COMMENT 'Número de DNI o pasaporte del cliente',
`direccionpublica` blob NOT NULL COMMENT 'Dirección pública del cliente',
`email` varchar(101) NOT NULL DEFAULT '' COMMENT 'Email del usuario',
`documento` mediumblob NOT NULL COMMENT 'DNI o Pasaporte del Cliente',
`fecha` datetime NOT NULL DEFAULT '0000-00-00 00:00:00' COMMENT 'Momento en el que creó la petición de verificación',
`nacionalidad` tinyint(4) NOT NULL DEFAULT 0 COMMENT 'Nacionalidad Cliente',
`idioma` tinyint(3) unsigned NOT NULL DEFAULT 0 COMMENT 'Idioma de cara al envío de mails',
`ip` varchar(16) DEFAULT NULL COMMENT 'Ip desde la que se dio de alta el cliente',
`nombrefichero` varchar(30) DEFAULT '' COMMENT 'Nombre del fichero con el que debemos devolver la clave pública',
PRIMARY KEY (`numeroid`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COMMENT='Clientes pendientes de verificar'
b) mysql slow query output
Time: 220719 23:46:08
User#Host: cabe[cabe] # [217.61.225.227]
Thread_id: 33 Schema: litra QC_hit: No
**Query_time: 179.691794** Lock_time: 0.000120 Rows_sent: 10 Rows_examined: 10
Rows_affected: 0 Bytes_sent: 5504314
Full_scan: Yes Full_join: No Tmp_table: No Tmp_table_on_disk: No
Filesort: No Filesort_on_disk: No Merge_passes: 0 Priority_queue: No
explain: id select_type table type possible_keys key key_len ref rows r_rows filtered r_filtered Extra
explain: 1 SIMPLE clientespendientes ALL NULL NULL NULL NULL 10 10.00 100.00 100.00
SET timestamp=1658274368;
SELECT * FROM litra.clientespendientes
LIMIT 0, 1000;
c) Global variables.
analyze_sample_percentage 100.000000
aria_block_size 8192
aria_checkpoint_interval 30
aria_checkpoint_log_activity 1048576
aria_encrypt_tables OFF
aria_force_start_after_recovery_failures 0
aria_group_commit none
aria_group_commit_interval 0
aria_log_file_size 1073741824
aria_log_purge_type immediate
aria_max_sort_file_size 9223372036853727232
aria_page_checksum ON
aria_pagecache_age_threshold 300
aria_pagecache_buffer_size 134217728
aria_pagecache_division_limit 100
aria_pagecache_file_hash_size 512
aria_recover_options BACKUP,QUICK
aria_repair_threads 1
aria_sort_buffer_size 268434432
aria_stats_method nulls_unequal
aria_sync_log_dir NEWFILE
aria_used_for_temp_tables ON
auto_increment_increment 1
auto_increment_offset 1
autocommit ON
automatic_sp_privileges ON
back_log 80
basedir /usr
big_tables OFF
bind_address 0.0.0.0
binlog_annotate_row_events ON
binlog_cache_size 32768
binlog_checksum CRC32
binlog_commit_wait_count 0
binlog_commit_wait_usec 100000
binlog_direct_non_transactional_updates OFF
binlog_file_cache_size 16384
binlog_format MIXED
binlog_optimize_thread_scheduling ON
binlog_row_image FULL
binlog_row_metadata NO_LOG
binlog_stmt_cache_size 32768
bulk_insert_buffer_size 8388608
character_set_client utf8
character_set_connection utf8
character_set_database utf8mb4
character_set_filesystem binary
character_set_results utf8
character_set_server utf8mb4
character_set_system utf8
character_sets_dir /usr/share/mysql/charsets/
check_constraint_checks ON
collation_connection utf8_general_ci
collation_database utf8mb4_general_ci
collation_server utf8mb4_general_ci
column_compression_threshold 100
column_compression_zlib_level 6
column_compression_zlib_strategy DEFAULT_STRATEGY
column_compression_zlib_wrap OFF
completion_type NO_CHAIN
concurrent_insert AUTO
connect_timeout 10
core_file OFF
datadir /var/lib/mysql/
date_format %Y-%m-%d
datetime_format %Y-%m-%d %H:%i:%s
deadlock_search_depth_long 15
deadlock_search_depth_short 4
deadlock_timeout_long 50000000
deadlock_timeout_short 10000
debug_no_thread_alarm OFF
default_master_connection
default_password_lifetime 0
default_regex_flags
default_storage_engine InnoDB
default_tmp_storage_engine
default_week_format 0
delay_key_write ON
delayed_insert_limit 100
delayed_insert_timeout 300
delayed_queue_size 1000
disconnect_on_expired_password OFF
div_precision_increment 4
encrypt_binlog OFF
encrypt_tmp_disk_tables OFF
encrypt_tmp_files OFF
enforce_storage_engine
eq_range_index_dive_limit 200
error_count 0
event_scheduler OFF
expensive_subquery_limit 100
expire_logs_days 10
explicit_defaults_for_timestamp OFF
external_user
extra_max_connections 1
extra_port 0
flush OFF
flush_time 0
foreign_key_checks ON
ft_boolean_syntax + -><()~*:""&|
ft_max_word_len 84
ft_min_word_len 4
ft_query_expansion_limit 20
ft_stopword_file (built-in)
general_log ON
general_log_file /var/log/mysql/mysql.log
group_concat_max_len 1048576
gtid_binlog_pos
gtid_binlog_state
gtid_cleanup_batch_size 64
gtid_current_pos
gtid_domain_id 0
gtid_ignore_duplicates OFF
gtid_pos_auto_engines
gtid_seq_no 0
gtid_slave_pos
gtid_strict_mode OFF
have_compress YES
have_crypt YES
have_dynamic_loading YES
have_geometry YES
have_openssl YES
have_profiling YES
have_query_cache YES
have_rtree_keys YES
have_ssl DISABLED
have_symlink YES
histogram_size 254
histogram_type DOUBLE_PREC_HB
host_cache_size 279
hostname Litra0
identity 0
idle_readonly_transaction_timeout 0
idle_transaction_timeout 0
idle_write_transaction_timeout 0
ignore_builtin_innodb OFF
ignore_db_dirs
in_predicate_conversion_threshold 1000
in_transaction 0
init_connect
init_file
init_slave
innodb_adaptive_flushing ON
innodb_adaptive_flushing_lwm 10.000000
innodb_adaptive_hash_index OFF
innodb_adaptive_hash_index_parts 8
innodb_adaptive_max_sleep_delay 0
innodb_autoextend_increment 64
innodb_autoinc_lock_mode 1
innodb_background_scrub_data_check_interval 0
innodb_background_scrub_data_compressed OFF
innodb_background_scrub_data_interval 0
innodb_background_scrub_data_uncompressed OFF
innodb_buf_dump_status_frequency 0
innodb_buffer_pool_chunk_size 134217728
innodb_buffer_pool_dump_at_shutdown ON
innodb_buffer_pool_dump_now OFF
innodb_buffer_pool_dump_pct 25
innodb_buffer_pool_filename ib_buffer_pool
innodb_buffer_pool_instances 1
innodb_buffer_pool_load_abort OFF
innodb_buffer_pool_load_at_startup ON
innodb_buffer_pool_load_now OFF
innodb_buffer_pool_size 1073741824
innodb_change_buffer_max_size 25
innodb_change_buffering none
innodb_checksum_algorithm full_crc32
innodb_cmp_per_index_enabled OFF
innodb_commit_concurrency 0
innodb_compression_algorithm zlib
innodb_compression_default OFF
innodb_compression_failure_threshold_pct 5
innodb_compression_level 6
innodb_compression_pad_pct_max 50
innodb_concurrency_tickets 0
innodb_data_file_path ibdata1:12M:autoextend
innodb_data_home_dir
innodb_deadlock_detect ON
innodb_default_encryption_key_id 1
innodb_default_row_format dynamic
innodb_defragment OFF
innodb_defragment_fill_factor 0.900000
innodb_defragment_fill_factor_n_recs 20
innodb_defragment_frequency 40
innodb_defragment_n_pages 7
innodb_defragment_stats_accuracy 0
innodb_disable_sort_file_cache OFF
innodb_disallow_writes OFF
innodb_doublewrite ON
innodb_encrypt_log OFF
innodb_encrypt_tables OFF
innodb_encrypt_temporary_tables OFF
innodb_encryption_rotate_key_age 1
innodb_encryption_rotation_iops 100
innodb_encryption_threads 0
innodb_fast_shutdown 1
innodb_fatal_semaphore_wait_threshold 600
innodb_file_format
innodb_file_per_table ON
innodb_fill_factor 100
innodb_flush_log_at_timeout 1
innodb_flush_log_at_trx_commit 1
innodb_flush_method fsync
innodb_flush_neighbors 1
innodb_flush_sync ON
innodb_flushing_avg_loops 30
innodb_force_load_corrupted OFF
innodb_force_primary_key OFF
innodb_force_recovery 0
innodb_ft_aux_table
innodb_ft_cache_size 8000000
innodb_ft_enable_diag_print OFF
innodb_ft_enable_stopword ON
innodb_ft_max_token_size 84
innodb_ft_min_token_size 3
innodb_ft_num_word_optimize 2000
innodb_ft_result_cache_limit 2000000000
innodb_ft_server_stopword_table
innodb_ft_sort_pll_degree 2
innodb_ft_total_cache_size 640000000
innodb_ft_user_stopword_table
innodb_immediate_scrub_data_uncompressed OFF
innodb_instant_alter_column_allowed add_drop_reorder
innodb_io_capacity 200
innodb_io_capacity_max 2000
innodb_large_prefix
innodb_lock_schedule_algorithm fcfs
innodb_lock_wait_timeout 50
innodb_lock_wait_timeout 50
innodb_log_buffer_size 16777216
innodb_log_checksums ON
innodb_log_compressed_pages ON
innodb_log_file_size 100663296
innodb_log_files_in_group 1
innodb_log_group_home_dir ./
innodb_log_optimize_ddl OFF
innodb_log_write_ahead_size 8192
innodb_lru_flush_size 32
innodb_lru_scan_depth 1536
innodb_max_dirty_pages_pct 90.000000
innodb_max_dirty_pages_pct_lwm 0.000000
innodb_max_purge_lag 0
innodb_max_purge_lag_delay 0
innodb_max_purge_lag_wait 4294967295
innodb_max_undo_log_size 10485760
innodb_monitor_disable
innodb_monitor_enable
innodb_monitor_reset
innodb_monitor_reset_all
innodb_old_blocks_pct 37
innodb_old_blocks_time 1000
innodb_online_alter_log_max_size 134217728
innodb_open_files 2000
innodb_optimize_fulltext_only OFF
innodb_page_cleaners 1
innodb_page_size 16384
innodb_prefix_index_cluster_optimization OFF
innodb_print_all_deadlocks OFF
innodb_purge_batch_size 300
innodb_purge_rseg_truncate_frequency 128
innodb_purge_threads 4
innodb_random_read_ahead OFF
innodb_read_ahead_threshold 56
innodb_read_io_threads 4
innodb_read_only OFF
innodb_replication_delay 0
innodb_rollback_on_timeout OFF
innodb_scrub_log OFF
innodb_scrub_log_speed 256
innodb_sort_buffer_size 1048576
innodb_spin_wait_delay 4
innodb_stats_auto_recalc ON
innodb_stats_include_delete_marked OFF
innodb_stats_method nulls_equal
innodb_stats_modified_counter 0
innodb_stats_on_metadata OFF
innodb_stats_persistent ON
innodb_stats_persistent_sample_pages 20
innodb_stats_traditional ON
innodb_stats_transient_sample_pages 8
innodb_status_output OFF
innodb_status_output_locks OFF
innodb_strict_mode ON
innodb_sync_array_size 1
innodb_sync_spin_loops 30
innodb_table_locks ON
innodb_temp_data_file_path ibtmp1:12M:autoextend
innodb_thread_concurrency 0
innodb_thread_sleep_delay 0
innodb_tmpdir
innodb_undo_directory ./
innodb_undo_log_truncate OFF
innodb_undo_logs 128
innodb_undo_tablespaces 0
innodb_use_atomic_writes ON
innodb_use_native_aio ON
innodb_version 10.5.15
innodb_write_io_threads 4
insert_id 0
interactive_timeout 28800
join_buffer_size 262144
join_buffer_space_limit 2097152
join_cache_level 2
keep_files_on_create OFF
key_buffer_size 268435456
key_cache_age_threshold 300
key_cache_block_size 1024
key_cache_division_limit 100
key_cache_file_hash_size 512
key_cache_segments 0
large_files_support ON
large_page_size 0
large_pages OFF
last_gtid
last_insert_id 0
lc_messages en_US
lc_messages_dir /usr/share/mysql
lc_time_names en_US
license GPL
local_infile ON
lock_wait_timeout 86400
locked_in_memory OFF
log_bin OFF
log_bin_basename
log_bin_compress OFF
log_bin_compress_min_len 256
log_bin_index
log_bin_trust_function_creators OFF
log_disabled_statements sp
log_error /var/log/mysql/error.log
log_output FILE
log_queries_not_using_indexes OFF
log_slave_updates OFF
log_slow_admin_statements ON
log_slow_disabled_statements sp
log_slow_filter admin,filesort,filesort_on_disk,filesort_priority_queue,full_join,full_scan,query_cache,query_cache_miss,tmp_table,tmp_table_on_disk
log_slow_rate_limit 1
log_slow_slave_statements ON
log_slow_verbosity query_plan,explain
log_tc_size 24576
log_warnings 2
long_query_time 10.000000
low_priority_updates OFF
lower_case_file_system OFF
lower_case_table_names 0
master_verify_checksum OFF
max_allowed_packet 1073741824
max_binlog_cache_size 18446744073709547520
max_binlog_size 1073741824
max_binlog_stmt_cache_size 18446744073709547520
max_connect_errors 100
max_connections 151
max_delayed_threads 20
max_digest_length 1024
max_error_count 64
max_heap_table_size 16777216
max_insert_delayed_threads 20
max_join_size 18446744073709551615
max_length_for_sort_data 1024
max_password_errors 4294967295
max_prepared_stmt_count 16382
max_recursive_iterations 4294967295
max_relay_log_size 1073741824
max_rowid_filter_size 131072
max_seeks_for_key 4294967295
max_session_mem_used 9223372036854775807
max_rowid_filter_size 131072
max_seeks_for_key 4294967295
max_session_mem_used 9223372036854775807
max_sort_length 1024
max_sp_recursion_depth 0
max_statement_time 0.000000
max_tmp_tables 32
max_user_connections 0
max_write_lock_count 4294967295
metadata_locks_cache_size 1024
metadata_locks_hash_instances 8
min_examined_row_limit 0
mrr_buffer_size 262144
myisam_block_size 1024
myisam_data_pointer_size 6
myisam_max_sort_file_size 9223372036853727232
myisam_mmap_size 18446744073709551615
myisam_recover_options BACKUP,QUICK
myisam_repair_threads 1
myisam_sort_buffer_size 134216704
myisam_stats_method NULLS_UNEQUAL
myisam_use_mmap OFF
mysql56_temporal_format ON
net_buffer_length 16384
net_read_timeout 30
net_retry_count 10
net_write_timeout 60
old OFF
old_alter_table DEFAULT
old_mode
old_passwords OFF
open_files_limit 32194
optimizer_max_sel_arg_weight 32000
optimizer_prune_level 1
optimizer_search_depth 62
optimizer_selectivity_sampling_limit 100
optimizer_switch index_merge=on,index_merge_union=on,index_merge_sort_union=on,index_merge_intersection=on,index_merge_sort_intersection=off,engine_condition_pushdown=off,index_cond>
optimizer_trace enabled=off
optimizer_trace_max_mem_size 1048576
optimizer_use_condition_selectivity 4
performance_schema OFF
performance_schema_accounts_size -1
performance_schema_digests_size -1
performance_schema_events_stages_history_long_size -1
performance_schema_events_stages_history_size -1
performance_schema_events_statements_history_long_size -1
performance_schema_events_statements_history_long_size -1
performance_schema_events_statements_history_size -1
performance_schema_events_transactions_history_long_size -1
performance_schema_events_transactions_history_size -1
performance_schema_events_waits_history_long_size -1
performance_schema_events_waits_history_size -1
performance_schema_hosts_size -1
performance_schema_max_cond_classes 90
performance_schema_max_cond_instances -1
performance_schema_max_digest_length 1024
performance_schema_max_file_classes 80
performance_schema_max_file_handles 32768
performance_schema_max_file_instances -1
performance_schema_max_index_stat -1
performance_schema_max_memory_classes 320
performance_schema_max_metadata_locks -1
performance_schema_max_mutex_classes 210
performance_schema_max_mutex_instances -1
performance_schema_max_prepared_statements_instances -1
performance_schema_max_program_instances -1
performance_schema_max_rwlock_classes 50
performance_schema_max_rwlock_instances -1
performance_schema_max_socket_classes 10
performance_schema_max_socket_instances -1
performance_schema_max_sql_text_length 1024
performance_schema_max_stage_classes 160
performance_schema_max_statement_classes 222
performance_schema_max_statement_stack 10
performance_schema_max_table_handles -1
performance_schema_max_table_instances -1
performance_schema_max_table_lock_stat -1
performance_schema_max_thread_classes 50
performance_schema_max_thread_instances -1
performance_schema_session_connect_attrs_size -1
performance_schema_setup_actors_size -1
performance_schema_setup_objects_size -1
performance_schema_users_size -1
pid_file /run/mysqld/mysqld.pid
plugin_dir /usr/lib/mysql/plugin/
plugin_maturity gamma
port 3306
preload_buffer_size 32768
profiling OFF
profiling_history_size 15
progress_report_time 5
protocol_version 10
proxy_protocol_networks
proxy_user
pseudo_slave_mode OFF
pseudo_thread_id 37
query_alloc_block_size 16384
query_cache_limit 1048576
query_cache_min_res_unit 4096
query_cache_size 1048576
query_cache_strip_comments OFF
query_cache_type OFF
query_cache_wlock_invalidate OFF
query_prealloc_size 24576
rand_seed1 338934328
rand_seed2 991539275
range_alloc_block_size 4096
read_binlog_speed_limit 0
read_buffer_size 131072
read_only OFF
read_rnd_buffer_size 262144
relay_log
relay_log_basename
relay_log_index
relay_log_info_file relay-log.info
relay_log_purge ON
relay_log_recovery OFF
relay_log_space_limit 0
replicate_annotate_row_events ON
replicate_do_db
replicate_do_table
replicate_events_marked_for_skip REPLICATE
replicate_ignore_db
replicate_ignore_table
replicate_wild_do_table
replicate_wild_ignore_table
report_host
report_password
report_port 3306
report_user
require_secure_transport OFF
rowid_merge_buff_size 8388608
rpl_semi_sync_master_enabled OFF
rpl_semi_sync_master_timeout 10000
rpl_semi_sync_master_trace_level 32
rpl_semi_sync_master_wait_no_slave ON
rpl_semi_sync_master_wait_point AFTER_COMMIT
rpl_semi_sync_master_wait_point AFTER_COMMIT
rpl_semi_sync_slave_delay_master OFF
rpl_semi_sync_slave_enabled OFF
rpl_semi_sync_slave_kill_conn_timeout 5
rpl_semi_sync_slave_trace_level 32
secure_auth ON
secure_file_priv
secure_timestamp NO
server_id 1
session_track_schema ON
session_track_state_change OFF
session_track_system_variables autocommit,character_set_client,character_set_connection,character_set_results,time_zone
session_track_transaction_info OFF
skip_external_locking ON
skip_name_resolve OFF
skip_networking OFF
skip_parallel_replication OFF
skip_replication OFF
skip_show_database OFF
slave_compressed_protocol OFF
slave_ddl_exec_mode IDEMPOTENT
slave_domain_parallel_threads 0
slave_exec_mode STRICT
slave_load_tmpdir /tmp
slave_max_allowed_packet 1073741824
slave_net_timeout 60
slave_parallel_max_queued 131072
slave_parallel_mode optimistic
slave_parallel_threads 0
slave_parallel_workers 0
slave_run_triggers_for_rbr NO
slave_skip_errors OFF
slave_sql_verify_checksum ON
slave_transaction_retries 10
slave_transaction_retry_errors 1158,1159,1160,1161,1205,1213,1429,2013,12701
slave_transaction_retry_interval 0
slave_type_conversions
slow_launch_time 2
slow_query_log ON
slow_query_log_file /var/log/mysql/mariadb-slow.log
socket /run/mysqld/mysqld.sock
sort_buffer_size 2097152
sql_auto_is_null OFF
sql_big_selects ON
sql_buffer_result OFF
sql_if_exists OFF
sql_if_exists OFF
sql_log_bin ON
sql_log_off OFF
sql_mode STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION
sql_notes ON
sql_quote_show_create ON
sql_safe_updates OFF
sql_select_limit 18446744073709551615
sql_slave_skip_counter 0
sql_warnings OFF
ssl_ca
ssl_capath
ssl_cert
ssl_cipher
ssl_crl
ssl_crlpath
ssl_key
standard_compliant_cte ON
storage_engine InnoDB
stored_program_cache 256
strict_password_validation ON
sync_binlog 0
sync_frm ON
sync_master_info 10000
sync_relay_log 10000
sync_relay_log_info 10000
system_time_zone UTC
system_versioning_alter_history ERROR
system_versioning_asof DEFAULT
table_definition_cache 400
table_open_cache 2000
table_open_cache_instances 8
tcp_keepalive_interval 0
tcp_keepalive_probes 0
tcp_keepalive_time 0
tcp_nodelay ON
thread_cache_size 151
thread_handling one-thread-per-connection
thread_pool_dedicated_listener OFF
thread_pool_exact_stats OFF
thread_pool_idle_timeout 60
thread_pool_max_threads 65536
thread_pool_oversubscribe 3
thread_pool_prio_kickup_timer 1000
thread_pool_priority auto
thread_pool_prio_kickup_timer 1000
thread_pool_priority auto
thread_pool_size 12
thread_pool_stall_limit 500
thread_stack 196608
time_format %H:%i:%s
time_zone SYSTEM
timestamp 1658275075.187231
tls_version TLSv1.1,TLSv1.2,TLSv1.3
tmp_disk_table_size 18446744073709551615
tmp_memory_table_size 16777216
tmp_table_size 16777216
tmpdir /tmp
transaction_alloc_block_size 8192
transaction_prealloc_size 4096
tx_isolation REPEATABLE-READ
tx_read_only OFF
unique_checks ON
updatable_views_with_limit YES
use_stat_tables PREFERABLY_FOR_QUERIES
userstat OFF
version 10.5.15-MariaDB-0+deb11u1-log
version_comment Debian 11
version_compile_machine x86_64
version_compile_os debian-linux-gnu
version_malloc_library system
version_source_revision 9aa3564e8a06c3d2027fc514213ecf42b049b06e
version_ssl_library OpenSSL 1.1.1n 15 Mar 2022
wait_timeout 28800
warning_count 0
wsrep_osu_method TOI
wsrep_sr_store table
wsrep_auto_increment_control ON
wsrep_causal_reads OFF
wsrep_certification_rules strict
wsrep_certify_nonpk ON
wsrep_cluster_address
wsrep_cluster_name my_wsrep_cluster
wsrep_convert_lock_to_trx OFF
wsrep_data_home_dir /var/lib/mysql/
wsrep_dbug_option
wsrep_debug NONE
wsrep_desync OFF
wsrep_dirty_reads OFF
wsrep_drupal_282555_workaround OFF
wsrep_forced_binlog_format NONE
wsrep_gtid_domain_id 0
wsrep_gtid_mode OFF
wsrep_gtid_seq_no 0
wsrep_ignore_apply_errors 7
wsrep_load_data_splitting OFF
wsrep_log_conflicts OFF
wsrep_max_ws_rows 0
wsrep_max_ws_size 2147483647
wsrep_mysql_replication_bundle 0
wsrep_node_address
wsrep_node_incoming_address AUTO
wsrep_node_name Litra0
wsrep_notify_cmd
wsrep_on OFF
wsrep_patch_version wsrep_26.22
wsrep_provider none
wsrep_provider_options
wsrep_recover OFF
wsrep_reject_queries NONE
wsrep_replicate_myisam OFF
wsrep_restart_slave OFF
wsrep_retry_autocommit 1
wsrep_slave_fk_checks ON
wsrep_slave_uk_checks OFF
wsrep_slave_threads 1
wsrep_sst_auth
wsrep_sst_donor
wsrep_sst_donor_rejects_queries OFF
wsrep_sst_method rsync
wsrep_sst_receive_address AUTO
wsrep_start_position 00000000-0000-0000-0000-000000000000:-1
wsrep_strict_ddl OFF
wsrep_sync_wait 0
wsrep_trx_fragment_size 0
wsrep_trx_fragment_unit bytes

MariaDB not listening on 0.0.0.0

This is the MariaDB/MySQL version on my VPS running Ubuntu 16.04:
mysql Ver 15.1 Distrib 10.0.29-MariaDB, for debian-linux-gnu (x86_64) using readline 5.2
This is probably the relevant content of /etc/mysql/mariadb.conf.d/50-server.cnf:
1 #
2 # These groups are read by MariaDB server.
3 # Use it for options that only the server (but not clients) should see
4 #
5 # See the examples of server my.cnf files in /usr/share/mysql/
6 #
7
8 # this is read by the standalone daemon and embedded servers
9 [server]
10
11 # this is only for the mysqld standalone daemon
12 [mysqld]
13
14 #
15 # * Basic Settings
16 #
17 user = mysql
18 pid-file = /var/run/mysqld/mysqld.pid
19 socket = /var/run/mysqld/mysqld.sock
20 port = 3306
21 basedir = /usr
22 datadir = /var/lib/mysql
23 tmpdir = /tmp
24 lc-messages-dir = /usr/share/mysql
25 skip-external-locking
26
27 # Instead of skip-networking the default is now to listen only on
28 # localhost which is more compatible and is not less secure.
29 bind-address = 0.0.0.0 #This is line changed by me from 127.0.0.1
30
After using systemctl stop mysql and systemctl start mysql, this is still my netstat -nat |grep :3306's output:
tcp 0 0 127.0.0.1:3306 0.0.0.0:* LISTEN
tcp 0 0 127.0.0.1:3306 127.0.0.1:54316 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58456 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58466 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58458 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58454 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58460 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58444 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58452 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58446 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58462 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58464 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58450 ESTABLISHED
tcp 0 0 127.0.0.1:3306 127.0.0.1:58468 ESTABLISHED
As you can see in the first line, its still listening on 127.0.0.1, and not on 0.0.0.0. Where am I possibly going wrong? TIA

Rolling queue size

I want to calculate number of items waiting or queued over. Let's say, I have fixed capacity of 102 item/hour and different incoming items for 9 hours.
as data table:
dt<-data.table(hour = c(1,2,3,4,5,6,7,8,9),
incoming = c(78,102,115,117,105,99,91,80,71),
capacity = rep(102,9))
I want to calculate queued items in each period.
In 1 and 2 capacity is enough and queue is 0.
In 3, 13 items are queued
In 4, 15+13 backlogged items are queued.
In 6, there were 31 backlogged items and 3 items are deducted so 28 were queued.
I have tried several options but could not figure out how to calculate.
Result should be:
Explicit looping in R won't get you far, and I don't see a vectorized solution for this, but this is trivial to solve using Rcpp:
library(Rcpp)
cppFunction("NumericVector queue(NumericVector x) {
NumericVector res(x.size());
res[0] = std::max<double>(0, x[0]);
for (int i = 1, size = x.size(); i < size; ++i) {
res[i] = std::max<double>(0, res[i-1] + x[i]);
}
return res;
}")
dt[, queued := queue(incoming - capacity)][]
# hour incoming capacity queued
#1: 1 78 102 0
#2: 2 102 102 0
#3: 3 115 102 13
#4: 4 117 102 28
#5: 5 105 102 31
#6: 6 99 102 28
#7: 7 91 102 17
#8: 8 80 102 0
#9: 9 71 102 0
I'd create a separate function to get queued number like #sebastian-c did, but with #R.S. 's logic. Like this
get_queue <- function(x){
n <- length(x)
y <- c(max(0, x[[1]]), rep(0, n - 1))
for(i in 2:n){
y[i] <- max(0, y[i - 1] + x[i])
}
y
}
And then
dt[,incoming_capacity := incoming - capacity]
dt[,queued := get_queue(incoming_capacity)]
Another alternative:
require(data.table)
dt<-data.table(hour = c(1,2,3,4,5,6,7,8,9),
incoming = c(78,102,115,117,105,99,91,80,71),
capacity = rep(102,9))
dt$incoming_capactity<- dt$incoming-dt$capacity
dt$carriedover<- 0
dt$carriedover[1]<- max(0,dt$incoming_capactity[1]) #added
for( i in 2:length(dt$carriedover)) {
dt$carriedover[i]<- max(0,dt$incoming_capactity[i] + dt$carriedover[i-1])
}
dt

Calculate decimal value related to 4 byte hex array

I am looking through a field of bytes with hex values. The first 4 bytes map to one real-Value, a number. Now I need to know what decimal value it stands for and how to get this information?
ByteA = '12'; that means '18' in dec;
ByteB = '01'; that means '1' in dec;
ByteC = '00'; that means '0' in dec;
ByteD = '00'; that means '0' in dec;
Each byte gets multiplied by 256 ^ the position in the field, so it could be either:
Big-endian (most significant byte first)
18 * 256 ^ 3 = 301,989,888
1 * 256 ^ 2 = 65,536
0 * 256 ^ 1 = 0
0 * 256 ^ 0 = 0
-----------
302,055,424
Little-endian:
0 * 256 ^ 3 = 0
0 * 256 ^ 2 = 0
1 * 256 ^ 1 = 256
18 * 256 ^ 0 = 18
-----------
274
Most programming languages have built-in hex to decimal capabilities.

Resources