I'm getting an error when Knit to pdf in rstudio using R markdown. It works without issue to Knit to html.
The error I'm getting is:
Output created: PA1_template.pdf
Error in tools::file_path_as_absolute(output_file) :
file 'PA1_template.pdf' does not exist
Calls: <Anonymous> -> <Anonymous>
In addition: Warning messages:
1: running command '"pdflatex" -halt-on-error -interaction=batchmode "PA1_template.tex"' had status 1
2: In readLines(logfile) :
incomplete final line found on 'PA1_template.log'
Execution halted
Any help on how to fix the issue would be appreciated.
James
Resolved the above for me, please see below:
Hi all,
I finally got markdown knitting. Here’s a github link with the solution: https://github.com/rstudio/rmarkdown/issues/1285#issuecomment-374340175
Make sure the Miktex console settings > General > install missing packages on the fly
Install the dev version of tinytex in r studio
install.packages('rmarkdown')
devtools::install_github('yihui/tinytex')
Also, I had changed this: In R-Studio Tools > Global Options, under the Sweave tab, try changing "Weave Rnw using:"
If I get nothing else done today, this will still make it a day to remember.
Related
I am trying to knit an .rmd file to pdf. I am receiving the following error message:
Error in library(lmSupport) : there is no package called ‘lmSupport’
Execution halted
lmsupport is not in my code at all. I tried restarting R and clearing cache. Not sure what else to do.
I have the most recent version of R downloaded on my Mac
I am very new to R so if someone could explain this to me in very simple words, it would be greatly appreciated.
I just completed a project in r markdown but when I am trying to knit it, "Error file or directory not found" pops up and I cannot open the file even if it is saved manually.
this is what pops us in my console
processing file: Bellabeat-project.Rmd
|. | 2%
ordinary text without R code
|.. | 3%
label: unnamed-chunk-1 (with options)
List of 1
$ echo: logi TRUE
Quitting from lines 115-120 (Bellabeat-project.Rmd)
Error in read_csv("/Users/irina/Desktop/Fitabase Data 4.12.16-5.12.16/dailyActivity_merged.csv") :
could not find function "read_csv"
Calls: <Anonymous> ... withVisible -> eval_with_user_handlers -> eval -> eval
Execution halted
No LaTeX installation detected (LaTeX is required to create PDF output). You should install a LaTeX distribution for your platform: https://www.latex-project.org/get/
If you are not sure, you may install TinyTeX in R: tinytex::install_tinytex()
Otherwise consider MiKTeX on Windows - http://miktex.org
MacTeX on macOS - https://tug.org/mactex/
(NOTE: Download with Safari rather than Chrome _strongly_ recommended)
Linux: Use system package manager
I've tried saving other r markdown files and it worked perfectly so I am unsure what the problem is
I have also installed everything that is being said in the error window but it still doesn't work
What packages do you have loaded in the global chunk of the Rmd script? You might look into loading:
library(pander)
library(tinytex)
And you probably already loaded tidyverse but check that, too - the above packages helped resolve a similar issue for me.
I'm currently using Rstudio and R markdown to create a pdf. However, every time I attempt to knit these error messages show up:
! Sorry, but C:\Users\AP\AppData\Local\Programs\MiKTeX\miktex\bin\x64\pdflatex.exe did not succeed.
! The log file hopefully contains the information to get MiKTeX going again:
! C:\Users\AP\AppData\Local\MiKTeX\miktex\log\pdflatex.log
Error: LaTeX failed to compile new-report.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See c2089682-report.log for more info.
In addition: Warning message:
In has_crop_tools() :
Tool(s) not installed or not in PATH: ghostcript
-> As a result, figure cropping will be disabled.
Execution halted
I've attempted to uninstall/re-install MiKTex and restarting Rstudio but the problem persists. How can I solve this issue?
With a new installation of MiKTeX, many style files needed to knit an RMarkdown file to PDF are not installed. To allow MiKTeX to install them on the fly, open the MiKTeX console and go to the Settings tab.
There is an option that says You can choose whether missing packages are to be installed automatically (on-the-fly). Make sure that this is set to Always to allow the necessary style files to be installed.
For me I just went to MiKTeX console setting and choose ALWAYS missing packages to be installed automatically.
I've just installed RStudio and I want to knit a pdf document and I get this error message red:
Error: LaTeX failed to compile
diapositivas-PRYE-bugfac8d2bfe22dfde4bdebadc8cd65b2798b315d7788f1f7bef1c4c579a8d5f325.tex.
See https://yihui.org/tinytex/r/#debugging for debugging tips. Además:
Warning messages: 1: In system2(..., stdout = if (use_file_stdout())
f1 else FALSE, stderr = f2) : '"pdflatex"' not found 2: In
system2(...) : '"pdflatex"' not found Ejecución interrumpida
No LaTeX installation detected (LaTeX is required to create PDF
output). You should install a LaTeX distribution for your platform:
https://www.latex-project.org/get/
If you are not sure, you may install TinyTeX in R:
tinytex::install_tinytex()
Otherwise consider MiKTeX on Windows - http://miktex.org
MacTeX on macOS - https://tug.org/mactex/ (NOTE: Download with
Safari rather than Chrome strongly recommended)
Linux: Use system package manager
I've tried installing the "knitr" package, and run this:
install.packages("knitr")
library(knitr)
tinytex::install_tinytex()
but still getting the same error.
Thanks in advance for any help,
Ivan.
So you've tried this.
install.packages("knitr")
library(knitr)
tinytex::install_tinytex()
But try this instead. You need to have the tinytex package to use it's install function.
install.packages("knitr")
library(knitr)
install.packages("tinytex")
tinytex::install_tinytex()
I always run into that same problem. Try knitting it to .html, opening the .html file, and then exporting the .html file to pdf.
When using R Markdown, R Studio warned me the following message : "Rendering R Markdown documents requires an updated version of the yaml package". So I installed the latest version of the package yaml (2.2.0). But since then, I cannot knit any document in Rmarkdown (even the template or documents that were working just fine before).
I tried downloading older versions of yaml but I get the same message as at the beginning ("requires an updated version").
When I knit a document, I get the following error :
Error in yaml::yaml.load(..., eval.expr = TRUE) :
unused argument (eval.expr = TRUE)
Calls: <Anonymous> ... parse_yaml_front_matter -> yaml_load -> <Anonymous>
I had the unused argument (eval.expr = TRUE) problem after updating RStudio. Somehow it messed up with the R installation and an .Rmd that worked before, stopped working with that error.
What did the trick for me was removing yaml and installing it again.
> remove.packages("yaml")
> install.packages("yaml")
>