R shiny: save chosen factors from input data - r

I have a question regarding R shiny and the observ function. Is it possible to save the selected factors and the state of the work? For Example I created a programm which can choose colnames from the input data. After using bookmark and reopening the programm with the link in the browser the input data are loaded but the select factors of the colnames are reset. But I want to save the chosen colnames. Has anyone an idea? Thank you for your help!
ui <- function(request) {
fluidPage(
sidebarLayout(
sidebarPanel(
radioButtons(
"fileType_Input",
label = h5(""),
choices = list(".csv" = 1, ".xlsx" = 2),
selected = 1,
inline = TRUE
),
fileInput('file1', '' ),
selectInput("letters", label=NULL, factors, multiple = TRUE),
bookmarkButton()
),
mainPanel(
tableOutput("contents")
)
)
)
}
server <- function(input, output,session) {
myData <- reactive({
inFile <- input$file1
# Get the upload file
if (is.null(inFile)) {
return(NULL) }
if (input$fileType_Input == "1") {
read.csv2(inFile$datapath,
header = TRUE,
stringsAsFactors = FALSE)
} else {
read_excel(inFile$datapath)
}
})
observe({
if(is.null(input$letters)){
data <- myData()
if(is.null(data)){
}else{
factors <- colnames(data)
t$choices <- input$letters # append(u$choices,input$letters2)
updateSelectInput(session, "letters",
choices = factors #[!factors2 %in% u$choices)]
)}
}
})
#Display all input Data
output$contents <- renderTable(digits = NULL,{
df <-myData()
df
})
}
enableBookmarking("server")
shinyApp(ui, server)

You can save all needed inputs in a file, and then reapply them with functions like updateRadioButtons() and others.
Saving it to the file could look like this:
observeEvent(input$someRadioButton, {
states <- list()
states$someRadioButton <- input$someRadioButton
#you can save all the needed inputs like this
...
save(states, file = paste0(getwd(), "/myfile"))
})

Related

(In R shiny) About upload multiple csv files and print all tables out

I want to upload two csv files and print both tables out.
Here is the code I wrote:
library(shiny)
ui <- fluidPage(
sidebarLayout(
sidebarPanel(
fileInput(inputId = "files", label = "Choose CSV File", multiple = TRUE,accept = c(".csv")
)
),
mainPanel(
fluidRow(tableOutput("Policy1")),
fluidRow(tableOutput("Policy2")),
)
)
)
server <- function(input, output) {
data <- reactiveValues(file1 = NULL,
file2 = NULL)
output$Policy1 <- renderTable({
if(!is.null(input$files$datapath[1]))
data$file1 <- read.csv(input$files$datapath[1], header = TRUE)
data$file1
})
output$Policy2 <- renderTable({
if(is.null(input$files$datapath[2])) {return(1)}
else{return(NULL)}
})
}
shinyApp(ui, server)
and for the output$Policy2 part, I want to test when the is.null(input$files$datapath[2]) is true. I thought it should be true when I only upload one file or don't upload anything but
if I only upload one csv file, it didn't print out the table 1, which means is.null(input$files$datapath[2]) is false in this case.I don't know why this is the case.
And as a result, if I change the code to ask shiny print two tables for me and only upload one file, there will be an error, here is the code:
library(shiny)
ui <- fluidPage(
sidebarLayout(
sidebarPanel(
fileInput(inputId = "files", label = "Choose CSV File", multiple = TRUE,accept = c(".csv")
)
),
mainPanel(
fluidRow(tableOutput("Policy1")),
fluidRow(tableOutput("Policy2")),
)
)
)
server <- function(input, output) {
data <- reactiveValues(file1 = NULL,
file2 = NULL)
output$Policy1 <- renderTable({
if(!is.null(input$files$datapath[1]))
data$file1 <- read.csv(input$files$datapath[1], header = TRUE)
data$file1
})
output$Policy2 <- renderTable({
if(!is.null(input$files$datapath[2]))
data$file2 <- read.csv(input$files$datapath[2], header = TRUE)
data$file2
})
}
shinyApp(ui, server)
where I only change a little part and here is the error :
which I assume is because I should return NULL when only one file inputed in, how can I fix this problem, thanks for any help
The value won't be NULL if it's missing. It's better to check that there are enough values checking the length of the vector or something. For example
output$Policy2 <- renderTable({
if(!is.null(input$files) && length(input$files$datapath)>=2)
data$file2 <- read.csv(input$files$datapath[2], header = TRUE)
data$file2
})

How to restart an lapply loop within a renderUI

I am trying to create a shiny code that is able to filter a table non pre-determined number of times. When the user uploads a different (new) table, unfortunately the code breaks as I need to restart a lapply loop somehow, throwing out the previously stored column names.
I would like to create an non pre-defined filtering options for a table within Shiny. The user can select a column and filter a table choosing different categorical variables within that column. It is possible to add additional selection fields by pressing the 'Add' button.
the UI:
library(shiny)
library(shinydashboard)
library(dplyr)
ui <- shinyUI(
pageWithSidebar(
headerPanel("testing of dynamic number of selection"),
sidebarPanel(
uiOutput("buttons")),
mainPanel(
uiOutput("drops")
,tableOutput("table")
)
))
The server:
A table (test.csv) is automatically stored in a reactive values and a first searching field appears with 3 buttons (Add = to add a new searching field by reading in the colnames and a multiselect that stores the unique variables from that columns. The filtering function is activated by the Calculate button)
server<-function(input, output, session) {
###### read in test file
values<-reactiveValues(number = 1,
upload = NULL,
input = NULL)
values$upload<-read.csv("test.csv")
#just the "add" button, in this instance it shouldn't be a uiOutput
output$buttons <- renderUI({
div(
actionButton(inputId = "add", label = "Add"), actionButton(inputId = "calc", label = "Calculate"),
actionButton(inputId = "new", label = "new table")
)
})
#pressing the add button
observeEvent(input$add, {
cat("i adding a new record\n")
values$number <- values$number + 1L })
daStuff <- function(i){
inputName<-paste0("drop", i)
inputName2<-paste0("select", i)
inputText<-if(values$number>0){input[[paste0("drop",i)]]}else{F} # previously selected value for dropdown
inputSelect <- if(values$number>1){input[[paste0("select",i)]]}else{F} # previously selected value for dropdown
fluidRow(
column(6,selectInput(inputName, inputName, c(colnames(values$upload)), selected = inputText)),
column(6,selectInput(inputName2, inputName2,
na.omit(unique(as.vector(values$upload[,input[[paste0("drop",i)]]]))),
multiple=TRUE, selectize=TRUE, selected=inputSelect)) )}
output$drops<- renderUI({
lapply(seq_len(values$number), daStuff)})
By pressing the Calculate button, the uploaded table is subjected to filtering, depending on the selected unique values and shown in the output$table
observeEvent(input$calc, {
values$input<-NULL
for (i in 1:values$number){
if(!is.null(input[[paste0("select",i)]])){
if(is.null(values$input)){
values$input<- filter(values$upload,values$upload[,input[[paste0("drop",i)]]] %in% input[[paste0("select",i)]])}
else{
values$input<- filter(values$input,values$input[,input[[paste0("drop",i)]]] %in% input[[paste0("select",i)]])}
} }
if (is.null(values$input)){values$input<-values$upload}
output$table <- renderTable({values$input})
})
My problem is when I upload a new table (test2.csv), I don't know how to erase the previously stored selections (drop* and select* values) and gives back an error message.
observeEvent(input$new,{
values$upload<-read.csv("test2.csv")
})
}
shinyApp(ui=ui, server = server)
I suppose I should stop somehow the lapply loop and restart it over, so the previously stored values are replaced depending on the new selection, but I am a bit stuck on how I could achieve that.
Just in case you might still be looking for solutions, I wanted to share something that was similar and could potentially be adapted for your needs.
This uses observeEvent for all select inputs. If it detects any changes, it will update all inputs, including the possibilities for select based on drop.
In addition, when a new file is read, the selectInput for drop and select are reset to first value.
Edit: I forgot to keep selected = input[[paste0("drop",i)]] in place for the dropdown (see revised code). It seems to keep the values now when new filters are added - let me know if this is what you had in mind.
library(shiny)
library(shinydashboard)
library(dplyr)
myDataFrame <- read.csv("test.csv")
ui <- shinyUI(
pageWithSidebar(
headerPanel("Testing of dynamic number of selection"),
sidebarPanel(
fileInput("file1", "Choose file to upload", accept = ".csv"),
uiOutput("buttons")
),
mainPanel(
uiOutput("inputs"),
tableOutput("table")
)
)
)
server <- function(input, output, session) {
myInputs <- reactiveValues(rendered = c(1))
myData <- reactive({
inFile <- input$file1
if (is.null(inFile)) {
d <- myDataFrame
} else {
d <- read.csv(inFile$datapath)
}
d
})
observeEvent(lapply(paste0("drop", myInputs$rendered), function(x) input[[x]]), {
for (i in myInputs$rendered) {
updateSelectInput(session,
paste0('select', i),
choices = myData()[input[[paste0('drop', i)]]],
selected = input[[paste0("select",i)]])
}
})
output$buttons <- renderUI({
div(
actionButton(inputId = "add", label = "Add"),
actionButton(inputId = "calc", label = "Calculate")
)
})
observeEvent(input$add, {
myInputs$rendered <- c(myInputs$rendered, max(myInputs$rendered)+1)
})
observeEvent(input$calc, {
showData <- NULL
for (i in 1:length(myInputs$rendered)) {
if(!is.null(input[[paste0("select",i)]])) {
if(is.null(showData)) {
showData <- filter(myData(), myData()[,input[[paste0("drop",i)]]] %in% input[[paste0("select",i)]])
}
else {
showData <- filter(showData, showData[,input[[paste0("drop",i)]]] %in% input[[paste0("select",i)]])
}
}
}
if (is.null(showData)) { showData <- myData() }
output$table <- renderTable({showData})
})
observe({
output$inputs <- renderUI({
rows <- lapply(myInputs$rendered, function(i){
fluidRow(
column(6, selectInput(paste0('drop',i),
label = "",
choices = colnames(myData()),
selected = input[[paste0("drop",i)]])),
column(6, selectInput(paste0('select',i),
label = "",
choices = myData()[1],
multiple = TRUE,
selectize = TRUE))
)
})
do.call(shiny::tagList, rows)
})
})
}
shinyApp(ui, server)

R SHINY: Clear/ update mainPanel depending on selectInput/numericInput choice

I'm pretty new to shiny (being playing around for about a week). And I'm trying to create an app that takes and input tab-separated text file and perform several exploratory functions. In this case I'm presenting a very simplified version of that app just to highlight what I want to do in a specific case:
Problem:
If you try the app with the sample data (or any data in the same format) you can notice that the app effectively performs the default summary table (if selectInput="summarize", then output$sumfile), but when you try to select "explore", the previous table gets removed from the mainPanel, and outputs the full file (selectInput="explore",then output$gridfile) in the place where it would be as if selectInput="summarize" was still selected.
If you re-select "summarize", excelOutput("sumfile") gets duplicated on the mainPanel.
My goal is simple:
excelOutput("sumfile") when selectInput="summarize" ONLY and
excelOutput("gridfile") when selectInput="explore" ONLY
without placement issues or duplications on the mainPanel
So far I've tried:
inFile=input$df
if(is.null(inFile))
return(NULL)
if(input$show=="summarize")
return(NULL)
or
inFile=input$df
if(is.null(inFile))
return(NULL)
if(input$show=="explore")
return(NULL)
To control what shows up on the mainPanel, but with placement and duplication issues.
sample data:
#Build test data
testdat<-data.frame(W=c(rep("A",3),
rep("B",3),
rep("C",3)),
X=c(letters[1:9]),
Y=c(11:19),
Z=c(letters[1:7],"",NA),
stringsAsFactors = FALSE)
#Export test data
write.table(testdat,
"your/path/file.txt",
row.names = FALSE,
sep = "\t",
quote = FALSE,
na="")
shiny app (app.R):
library(shiny)
library(excelR)
#function to summarize tables
Pivot<-function(df){
cclass<-as.character(sapply(df,
class))
df.1<-apply(df,
2,
function(x) unlist(list(nrows = as.numeric(NROW(x)),
nrows.unique = length(unique(x))-(sum(is.na(x))+length(which(x==""))),
nrows.empty = (sum(is.na(x))+length(which(x==""))))))
df.2<-data.frame(df.1,
stringsAsFactors = FALSE)
df.3<-data.frame(t(df.2),
stringsAsFactors = FALSE)
df.3$col.class<-cclass
df.3$col.name<-row.names(df.3)
row.names(df.3)<-NULL
df.3<-df.3[c(5,4,1,2,3)]
return(df.3)
}
ui <- fluidPage(
ui <- fluidPage(titlePanel(title=h1("Summary generator",
align="center")),
sidebarLayout(
sidebarPanel(
h3("Loading panel",
align="center"),
fileInput("df",
"Choose file (format: file.txt)",
accept = c("plain/text",
".txt")),
selectInput("show",
"Choose what to do with file",
choices=c("summarize","explore")),
p("**'summarize' will output a summary of the selected table"),
p("**'explore' will output the full selected editable table"),
tags$hr()
),
mainPanel(
excelOutput("gridfile"),
excelOutput("sumfile")
))))
server <- function(input, output) {
dat<-reactive({
fp<-input$df$datapath
read.delim(fp,
quote="",
na.strings="\"\"",
stringsAsFactors=FALSE)
})
#get summary
output$sumfile<-renderExcel({
inFile=input$df
if(is.null(inFile)) #if fileInput is empty return nothing
return(NULL)
if(input$show=="explore") #if selectInput = "explore" return nothing
return(NULL)
dat.1<-data.frame(dat())
dat.2<-Pivot(dat.1)
excelTable(dat.2,
defaultColWidth = 100,
search = TRUE)
})
#get full file
output$gridfile<-renderExcel({
inFile=input$df
if(is.null(inFile)) #if fileInput is empty return nothing
return(NULL)
if(input$show=="summarize") #if selectInput = "summarize" return nothing
return(NULL)
dat.1<-data.frame(dat())
excelTable(dat.1,
defaultColWidth = 100,
search = TRUE)
})
}
shinyApp(ui = ui, server = server)
One way to do what you want is to use observeEvent for your inputs input$show and input$df and renderExcel based on your selection of `input$show. Here is an updated version for your code:
library(shiny)
library(excelR)
#function to summarize tables
Pivot<-function(df){
cclass<-as.character(sapply(df,
class))
df.1<-apply(df,
2,
function(x) unlist(list(nrows = as.numeric(NROW(x)),
nrows.unique = length(unique(x))-(sum(is.na(x))+length(which(x==""))),
nrows.empty = (sum(is.na(x))+length(which(x==""))))))
df.2<-data.frame(df.1,
stringsAsFactors = FALSE)
df.3<-data.frame(t(df.2),
stringsAsFactors = FALSE)
df.3$col.class<-cclass
df.3$col.name<-row.names(df.3)
row.names(df.3)<-NULL
df.3<-df.3[c(5,4,1,2,3)]
return(df.3)
}
ui <- fluidPage(
ui <- fluidPage(titlePanel(title=h1("Summary generator",
align="center")),
sidebarLayout(
sidebarPanel(
h3("Loading panel",
align="center"),
fileInput("df",
"Choose file (format: file.txt)",
accept = c("plain/text",
".txt")),
selectInput("show",
"Choose what to do with file",
choices=c("summarize","explore")),
p("**'summarize' will output a summary of the selected table"),
p("**'explore' will output the full selected editable table"),
tags$hr()
),
mainPanel(
excelOutput("gridfile"),
excelOutput("sumfile")
))))
server <- function(input, output) {
dat<-reactive({
fp<-input$df$datapath
read.delim(fp,
quote="",
na.strings="\"\"",
stringsAsFactors=FALSE)
})
observeEvent({
input$show
input$df
}, {
inFile=input$df
if(is.null(inFile)) #if fileInput is empty return nothing
return(NULL)
if(input$show=="explore") {
output$gridfile<-renderExcel({
dat.1<-data.frame(dat())
excelTable(dat.1,
defaultColWidth = 100,
search = TRUE)
})
}
if(input$show=="summarize") {
output$sumfile<-renderExcel({
dat.1<-data.frame(dat())
dat.2<-Pivot(dat.1)
excelTable(dat.2,
defaultColWidth = 100,
search = TRUE)
})
}
})
}
shinyApp(ui = ui, server = server)
Hope it helps!

use rhandsontable package to edit multiple data frame on shiny

I am new to the shiny, I would like to edit different multiple data frames by radio button or selectinput by using rhandsontable package. However, my script can not show other data frame but only the first one, I don't know what is the problem.
ui.R:
library(rhandsontable)
fluidPage(
sidebarLayout(
sidebarPanel(
selectInput("select2", label = h3("Choose to edit"),
choices = list("003.csv", "004.csv", "005.csv",
"006.csv", "007.csv"),
selected = "003.csv"),
actionButton("saveBtn", "Save changes")
),
mainPanel(
rHandsontableOutput("hot")
)))
server.R
values <- reactiveValues()
setHot <- function(x) values[["hot"]] <<- x
function(input, output, session) {
fname <- reactive({
x <- input$select2
return(x)
})
observe({
input$saveBtn # update csv file each time the button is pressed
if (!is.null(values[["hot"]])) {
write.csv(x = values[["hot"]], file = fname(), row.names = FALSE)
}
})
output$hot <- renderRHandsontable({
if (!is.null(input$hot)) { # if there is an rhot user input...
DF <- hot_to_r(input$hot) # convert rhandsontable data to R object
and store in data frame
setHot(DF) # set the rhandsontable values
} else {
DF <- read.csv(fname(), stringsAsFactors = FALSE) # else pull table from the csv (default)
setHot(DF) # set the rhandsontable values
}
rhandsontable(DF) %>% # actual rhandsontable object
hot_table(highlightCol = TRUE, highlightRow = TRUE, readOnly = TRUE) %>%
hot_col("Status", readOnly = FALSE)
})}
I can edit and save the dataframe that it shows the first one 003.csv, however when i use the drop down list to 004.csv, it didn't show the dataframe. please advise.
This will write (and possibly overwrite ⚠ any existing file with) dummy data:
for (i in c("003.csv", "004.csv", "005.csv", "006.csv", "007.csv")) {
write.csv(cbind(V1 = rep(i, 3), Status = "foo"), i, row.names = FALSE)
}
I overhauled server a bit:
library(shiny)
library(rhandsontable)
ui <- fluidPage(
sidebarLayout(
sidebarPanel(
selectInput(
"select2", label = h3("Choose to edit"), selected = "003.csv",
choices = list("003.csv", "004.csv", "005.csv", "006.csv", "007.csv")
),
actionButton("saveBtn", "Save changes")
),
mainPanel(
rHandsontableOutput("hot")
)
)
)
server <- function(input, output, session) {
DF <- reactiveVal()
observe({
DF(read.csv(input$select2, stringsAsFactors = FALSE))
})
observe({
if (!is.null(input$hot)) DF(hot_to_r(input$hot))
})
observeEvent(input$saveBtn, {
if (!is.null(DF())) write.csv(DF(), input$select2, row.names = FALSE)
})
output$hot <- renderRHandsontable({
rhandsontable(DF()) %>%
hot_table(highlightCol = TRUE, highlightRow = TRUE, readOnly = TRUE) %>%
hot_col("Status", readOnly = FALSE)
})
}
shinyApp(ui, server)

R shiny: get all Factors after input Data

Hey I have a Shiny App which input Data and work with them. But now I want an actionbutton which select the Factors for a subset funktion. Problem is that when I start the App and input the Data, the Factors are not there, just after the first click on the action button the factors get the column names of the Data.
How can I program this so that the factors are displayed to me directly after reading the data. Thank you for your help!
Here a part of the UI and Server
radioButtons(
"fileType_Input",
label = h5("Choose file type and click on browse"),
choices = list(".csv" = 1, ".xlsx" = 2),
selected = 1,
inline = TRUE
),
fileInput('file1', '' ),
selectInput("letters", label=NULL, factors, multiple = TRUE),
actionButton("choose", "Auswahl"),
verbatimTextOutput("list")
Server:
shinyServer(function(input, output, session) {
# Get the upload file
myData <- reactive({
inFile <- input$file1
if (is.null(inFile)) {
return(NULL) }
if (input$fileType_Input == "1") {
read.csv2(inFile$datapath,
header = TRUE,
stringsAsFactors = FALSE)
} else {
read_excel(inFile$datapath)
}
})
# When the Choose button is clicked, add the current letters to v$choices
# and update the selector
observeEvent(input$choose, {
data <- myData()
factors <- colnames(data) # get the names of the Factors in a Vector to select them
v$choices <- input$letters # append(v$choices,input$letters)
updateSelectInput(session, "letters",
choices = factors #[!factors %in% v$choices)]
)
})
output$list <- renderPrint({
v$choices
})
Instead of putting your code in observeEvent for input$choose you could put it in observe. Something like this:
observe({
if(!is.null(myData()))
{
data <- myData()
factors <- colnames(data) # get the names of the Factors in a Vector to select them
v$choices <- input$letters # append(v$choices,input$letters)
updateSelectInput(session, "letters",
choices = factors #[!factors %in% v$choices)]
)
}
})
Hope it helps!

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