Regex to maintain matched parts - r

I would like to achieve this result : "raster(B04) + raster(B02) - raster(A10mB03)"
Therefore, I created this regex: B[0-1][0-9]|A[1,2,6]0m/B[0-1][0-9]"
I am now trying to replace all matches of the string "B04 + B02 - A10mB03" with gsub("B[0-1][0-9]]|[A[1,2,6]0mB[0-1][0-9]", "raster()", string)
How could I include the original values B01, B02, A10mB03?
PS: I also tried gsub("B[0-1][0-9]]|[A[1,2,6]0mB[0-1][0-9]", "raster(\\1)", string) but it did not work.

Basically, you need to match some text and re-use it inside a replacement pattern. In base R regex methods, there is no way to do that without a capturing group, i.e. a pair of unescaped parentheses, enclosing the whole regex pattern in this case, and use a \\1 replacement backreference in the replacement pattern.
However, your regex contains some issues: [A[1,2,6] gets parsed as a single character class that matches A, [, 1, ,, 2 or 6 because you placed a [ before A. Also, note that , inside character classes matches a literal comma, and it is not what you expected. Another, similar issue, is with [0-9]] - it matches any ASCII digit with [0-9] and then a ] (the ] char does not have to be escaped in a regex pattern).
So, a potential fix for you expression can look like
gsub("(B[0-1][0-9]|A[126]0mB[0-1][0-9])", "raster(\\1)", string)
Or even just matching 1 or more word chars (considering the sample string you supplied)
gsub("(\\w+)", "raster(\\1)", string)
might do.
See the R demo online.

Related

How to remove a certain portion of the column name in a dataframe?

I have column names in the following format:
col= c('UserLanguage','Q48','Q21...20','Q22...21',"Q22_4_TEXT...202")
I would like to get the column names without everything that is after ...
[1] "UserLanguage" "Q48" "Q21" "Q22" "Q22_4_TEXT"
I am not sure how to code it. I found this post here but I am not sure how to specify the pattern in my case.
You can use gsub.
gsub("\\...*","",col)
#[1] "UserLanguage" "Q48" "Q21" "Q22" "Q22_4_TEXT"
Or you can use stringr
library(stringr)
str_remove(col, "\\...*")
Since . matches any character, we need to "escape" (\) to specify exactly what we want to match in the regular expression (and not use the special behavior of the .). So, to match a period, we would need \.. However, the backslash (\) is used to escape special behavior (e.g., escape symbol in strings) in regexps. So, to create the regular expression, we need an additional backslash, \\. In this case, we want to match additional periods, so we can add those here, hence \\.... Then, * specifies that the previous expression (everything the three periods) may occur 0 or more times.
You could sub and capture the first word in each column:
col <- c("UserLanguage", "Q48", "Q21...20", "Q22...21", "Q22_4_TEXT...202")
sub("^(\\w+).*$", "\\1", col)
[1] "UserLanguage" "Q48" "Q21" "Q22" "Q22_4_TEXT"
The regex pattern used here says to match:
^ from the start of the input
(\w+) match AND capture the first word
.* then consume the rest
$ end of the input
Then, using sub we replace with \1 to retain just the first word.

R: How to use stringr to extract the substring as the output to mutate a column of strings that begins with a string pattern and end with a number?

I'm creating a small example to be put into mutate(). Not sure why this doesn't work.
> str_extract("rs1234-<b>C</b>","^rs*\\d$")
[1] NA
I'd be great if you can point to my misunderstanding of the language instead of merely providing a solution. I expect to get "rs1234".
The ^rs*\d$ regex matches
^ - start of string
rs* - r and zero or more occurrences of s char
\d - a digit
$ - end of string.
So, your pattern matches strings like rsssss1, r3, etc.
You need
str_extract("rs1234-<b>C</b>", "^rs\\d+")
where ^rs\d+ matches rs at the start of string and then one or more digits. See this regex demo.
But if I just want the substring in between "rs" and the last number. What should I do?
You would use rs.*\d:
str_extract("rs1234-<b>C</b>", "rs.*\\d")
where rs.*\d matches rs, then any zero or more chars other than line break chars as many as possible and then a digit.
NOTE: If you need to match line endings, too, you need to prepend the last pattern with (?s) inline DOTALL modifier.
See this regex demo.

REGEX pattern match in R for Course number

I need to identify matching course number that have xx.3xxxxxx.
These are some examples of the course numbers.
26.3730004
27.0210000
26.3730009
26.7114001
23.9610071
26.0A34430
23.3670005
26.0B05430
I tried many patterns one example I used is the pattern below. It did not get any match.
"[^0-9]{2}\Q.\E3[^0-9]+$"
I tried using grep and grepl. I actually need the code to return indexes.
This code shows my attempt to tag the rows that have matches.
Teacher$virtual[
which(
grepl("[^0-9]{2}\\Q.\\E3[^0-9]+$",Teacher$CourseNumber))]
<- "1"
I need to remove any row from my dataframe that have the course number with that pattern. XX.3XXXXXX
But, my code did not find any match. Can you please help me?
You should use
grepl("^[0-9]{2}\\.3", Teacher$CourseNumber)
See the regex graph:
Details:
^ - start of a string
[0-9]{2} - two digits
\\. - a dot (note that a regex escape is a literal backslash, but inside a string literal, "...", a single backslash is used to form string escape sequences, hence the backslash must be double to obtain a literal backslash char necessary for a regex escape)
3 - a 3 char.
NOTE: If you want to use in-pattern quoting with \Q and \E (in between which all chars are treated literally) you need to use PCRE regex, add perl=TRUE and use
grepl("^[0-9]{2}\\Q.\\E3", Teacher$CourseNumber, perl=TRUE)
Now, the dot is treated as a literal dot, not a . metacharacter that matches any char but a line break char (in a PCRE regex, . does not match line break chars by default).
Here, this simple expression would likely cover that:
^[0-9]{2}\.[3].+$
which has a [3] boundary right after the .. It would probably work without start and end anchors:
[0-9]{2}\.[3].+
Demo
We can add or reduce the boundaries, if it'd be necessary.

can someone explain this regular expression inside gsub()? [duplicate]

This question already has an answer here:
Reference - What does this regex mean?
(1 answer)
Closed 4 years ago.
I'm trying to understand a regular expression someone has written in the gsub() function.
I've never used regular expressions before seeing this code, and i have tried to work out how it's getting the final result with some googling, but i have hit a wall so to speak.
gsub('.*(.{2}$)', '\\1',"my big fluffy cat")
This code returns the last two characters in the given string. In the above example it would return "at". This is the expected result but from my brief foray into regular expressions i don't understand why this code does what it does.
What i understand is the '.*' means look for any character 0 or more times. So it's going to look at the entire string and this is what will be replaced.
The part in brackets looks for any two characters at the end of the string. It would make more sense to me if this part in brackets was in place of the '\1'. To me it would then read look at the entire string and replace it with the last two characters of that string.
All that does though is output the actual code as the replacement e.g ".{2}$".
Finally i don't understand why '\1' is in the replace part of the function. To me this is just saying replace the entire string with a single backslash and the number one. I say a single backslash because it's my understanding the first backslash is just there to make the second backslash a none special character.
For gsub there are two ways of using the function. The most common way is probably.
gsub("-","TEST","This is a - ")
which would return
This is a TEST
What this does is simply finds the matches in the regular expression and replaces it with the replacement string.
The second way to use gsub is the method in which you described. using \\1, \\2 or \\3...
What this does is looks at the first, second or third capture group in your regular expression.
A capture group is defined by anything inside the circular brackets ex: (capture_group_1)(capture_group_2)...
Explanation
Your analysis is correct.
What i understand is the '.*' means look for any character 0 or more times. So it's going to look at the entire string and this is what will be replaced.
The part in brackets looks for any two characters at the end of the string
The last two characters are placed in a capture group and we are simply replace the whole string with this capture group. Not replacing them with anything.
if it helps, check out the result of this expression.
gsub('(.*)(.{2}$)', 'Group 1: \\1, Group 2: \\2',"my big fluffy cat")
hope the examples can help you to understand it better:
Say we have a string foobarabcabcdef
.* matches whole string.
.*abc it matches: from the beginning matches any chars till the last abc (greedy matching), thus, it matches foobarabcabc
.*(...)$ matches the whole string as well, however, the last 3 chars were groupped. Without the () , the matched string will have a default group, group0, the () will be group1, 2, 3.... think about .*(...)(...)(...)$ so we have:
group 0 : whole string
group 1 : "abc" the first "abc"
group 2 : "abc" the 2nd "abc"
group 3 : "def" the last 3 chars
So back to your example, the \\1 is a reference to group. What it does is: "replace the whole string by the matched text in group1" That is, the .{2}$ part is the replacement.
If you don't understand the backslashs, you have to reference the syntax of r, I cannot tell more. It is all about escaping.
Important part of that regular expression are brackets, that's something called "capturing group".
Regular expression .*(.{2}$) says - match anything and capture last 2 characters at the line. Replacement \\1 is referencing to that group, so it will replace whole match with captured group, which are last two characters in this case.

How to split a string by dashes outside of square brackets

I would like to split strings like the following:
x <- "abc-1230-xyz-[def-ghu-jkl---]-[adsasa7asda12]-s-[klas-bst-asdas foo]"
by dash (-) on the condition that those dashes must not be contained inside a pair of []. The expected result would be
c("abc", "1230", "xyz", "[def-ghu-jkl---]", "[adsasa7asda12]", "s",
"[klas-bst-asdas foo]")
Notes:
There is no nesting of square brackets inside each other.
The square brackets can contain any characters / numbers / symbols except square brackets.
The other parts of the string are also variable so that we can only assume that we split by - whenever it's not inside [].
There's a similar question for python (How to split a string by commas positioned outside of parenthesis?) but I haven't yet been able to accurately adjust that to my scenario.
You could use look ahead to verify that there is no ] following sooner than a [:
-(?![^[]*\])
So in R:
strsplit(x, "-(?![^[]*\\])", perl=TRUE)
Explanation:
-: match the hyphen
(?! ): negative look ahead: if that part is found after the previously matched hyphen, it invalidates the match of the hyphen.
[^[]: match any character that is not a [
*: match any number of the previous
\]: match a literal ]. If this matches, it means we found a ] before finding a [. As all this happens in a negative look ahead, a match here means the hyphen is not a match. Note that a ] is a special character in regular expressions, so it must be escaped with a backslash (although it does work without escape, as the engine knows there is no matching [ preceding it -- but I prefer to be clear about it being a literal). And as backslashes have a special meaning in string literals (they also denote an escape), that backslash itself must be escaped again in this string, so it appears as \\].
Instead of splitting, extract the parts:
library(stringr)
str_extract_all(x, "(\\[[^\\[]*\\]|[^-])+")
I am not familiar with r language, but I believe it can do regex based search and replace. Instead of struggling with one single regex split function, I would go in 3 steps:
replace - in all [....] parts by a invisible char, like \x99
split by -
for each element in the above split result(array/list), replace \x99 back to -
For the first step, you can find the parts by \[[^]]

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