How to fit large frequency table into R markdown ioslides? - r

I'm trying to fit large table of frequencies into my slide. There are many values, and even the rare ones would be nice to show.
I played with different options but none gives me a satisfactory solution. Here is Rmd so far:
---
title: "Untitled"
author: "author"
date: "date"
output: ioslides_presentation
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)
df <- as.data.frame(table(rownames((USArrests))))
```
## table 1
```{r t1, echo = TRUE}
table(rownames((USArrests)))
```
## table 2
```{r t2}
library(knitr)
library(kableExtra)
kable(df, "html") %>%
kable_styling(bootstrap_options = "striped", font_size = 10)
```
Table 1 doesn't fit:
Table 2 could be squeezed but with tiny font, and lots of wasted space on the sides.
I also looked into pander, xtable and stargazer but failed to find solution from them either.
Any other alternatives?

You could spread your table across multiple columns to fit the space. In my example below, I split the frame up into 3 pairs of columns with uneven length.
---
output: ioslides_presentation
---
```{r setup, include=FALSE}
library(dplyr)
library(magrittr)
library(knitr)
library(kableExtra)
```
## table 1
```{r, echo=TRUE, eval=FALSE}
USArrests %>% rownames %>% table
```
```{r, echo=FALSE}
df <- USArrests %>%
rownames %>%
table %>%
as_tibble
df %$%
tibble(
name1 = `.`[1:17],
n1 = n[1:17],
name2 = `.`[18:34],
n2 = n[18:34],
name3 = c(`.`[35:50], ""),
n3 = c(n[35:50], "")
) %>%
kable("html", align = c("l", "c"), col.names = rep(c("Name", "Frequency"), 3)) %>%
kable_styling(bootstrap_options = c("striped", "condensed"), font_size = 18)
```
N.B. I accept the transform step into multiple columns could have been done more elegantly and providing and more programmatic solution, however, I'll leave that to others to refine.

Related

Set internal document link as table value in Rmarkdown

I would like to set each value of a column in a datatable as an internal link to a different slide. Below is what I have tried but the link is not selectable.
---
title: "Example"
output: slidy_presentation
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)
```
```{r message=FALSE, warning=FALSE, include=FALSE}
library(DT)
library(tidyverse)
```
## Table
```{r carstab, echo = FALSE}
datatable(mtcars %>% rownames_to_column(var = "plot") %>% mutate(plot = ("[plot](#/plot)")),escape = TRUE)
```
## plot
```{r plot, echo = TRUE}
plot(mtcars)
```
mutate(plot = ("[plot](#/plot)")) does not work because the markdown code [plot](#/plot) will not be translated to HTML. Its a character.
You want something like <a href = '#(slide_number)'> This is a link </a> in your DT cells.
You could generate such links using paste0():
datatable(
mtcars %>%
mutate(
plot = 3,
plot = paste0("<a href = '#(", plot, ")'>link</a>"),
), escape = FALSE
)
The plot column in your DT now contains valid links to slide 3 (modify the first instance of plot in mutate() accordingly to link to different slides).

R markdown: how to print dataframe compactly

I am using knitr::kable to print my dataframes, but sometimes they are too big. Is there any simple way to print them compactly with scrollbar?
For example, I do:
knitr::kable(mtcars)
How could I add scrolling by condition (for example, if nrow > 10 and/or ncol > 10)?
P.S. DT::datatable doesn't work for big ncol:
I need exactly scrolling interface.
You can add scrollbars. For example, with kableExtra or DT:
R Markdown
---
title: "Untitled"
output: html_document
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
library(kableExtra)
```
Some very wide data:
```{r}
df <- cbind(mtcars, mtcars)
```
With `kableExtra`:
```{r}
kable(df) %>%
kable_styling("striped", full_width = F) %>%
scroll_box(width = "100%", height = "200px")
```
Or with `DT`:
```{r}
DT::datatable(
df,
height = 200,
options = list(scrollX = TRUE)
)
```
output

How to display R data frame in generated PowerPoint

---
title: "Untitled"
output: powerpoint_presentation
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)
```
## Table
```{r table, echo=FALSE, message=FALSE, warning=FALSE}
library(tidyverse)
library(kableExtra)
mtcars %>%
count(cyl) %>%
ungroup() # %>%
# kable() %>%
# kable_styling()
```
I'm working off the repro above. I'd like to present the mtcars calculated data frame in a kable or kableExtra fashion, like this:
Instead the table outputs in the following console format:
## # A tibble: 3 x 2
## cyl n
## <dbl> <int>
## 1 4 11
## 2 6 7
## 3 8 14
How do I make my R PowerPoint tables pretty, and even better, editable in PowerPoint?
You can use flextable package. It's support powerpoint_presentation output with R Markdown. You will find below an example :
---
title: "Untitled"
output: powerpoint_presentation
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)
```
## Table
```{r table, echo=FALSE, message=FALSE, warning=FALSE}
library(magrittr)
library(flextable)
mtcars[1:5,1:4] %>%
tibble::rownames_to_column() %>%
flextable() %>%
set_header_labels(rowname = "") %>%
add_header_row(values = c("", "Group 1", "Group 2"),
colwidths = c(1, 2, 2)) %>%
theme_zebra() %>% autofit()
```

how to automatically rename columns with math mode?

Consider this simple example
---
title: "Untitled"
output:
pdf_document: default
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)
options(knitr.table.format = "latex")
```
## Slide with R Output
```{r , echo = FALSE ,warning = FALSE}
library(knitr)
library(kableExtra)
library(dplyr)
cars %>%
filter(dist < 5) %>%
kable('latex', booktabs = T, escape = F, col.names = c( "$\\alpha$" , "$\\beta$" ) ) %>%
kable_styling(latex_options = c("striped", "hold_position"),
full_width = T)
```
Now this correcly generates the following output
The issue is that the renaming in col.names is manual and very tedious when my dataframe has many columns.
I would like to be able to able to say " if you see this variable dist in the dataframe, then map it to $\alpha$. Otherwise leave as is.
How can this be done?
Note, I am rendering the file using rmarkdown::render()
Thanks!!

Combining cells in R, LaTex

Can I have two summary statistics in one cell in R-generated LaTex tables? I'm using the tables package and I'd like to summarize a column as mean (sd). Here's a reproducible example in rmarkdown.
---
output: pdf_document
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
library(tables)
library(dplyr)
```
```{r table, results='asis'}
seed <- 1
iris2 <- iris %>% mutate(Region = factor(sample(c('East', 'West', 'Central'), 150, replace = TRUE)))
tabular((Species + 1) ~ (Region + 1) * Sepal.Length * (mean + sd),
data = iris2) %>%
latex %>%
print
```
The output looks like this:
But I want the cells to look like e.g. 5.037 (0.3041). Is that possible?
You can probably do something you want using paste()
E.g.:
paste(round(mean[1], digits=3), "(", sd[1], ")", collapse="")
The Paste pseudo-function does the trick, but introduces unnecessary padding (see: Remove padding from pasted cells in LaTex, R). Example code:
---
output: pdf_document
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
library(tables)
library(dplyr)
```
```{r table, results='asis'}
seed <- 1
iris2 <- iris %>% mutate(Region = factor(sample(c('East', 'West', 'Central'), 150, replace = TRUE)))
tabular((Species + 1) ~ (Region + 1) * Sepal.Length * Paste(Percent(), length, sep = '\\% (', postfix = ')'),
data = iris2) %>%
latex %>%
print
```

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