I'm running some command line sqlite3 queries (sqlite 2.8.17 Linux Mint 18.02) using regexp. This produces the error:
Error: no such function: REGEXP
I've already installed sqlite3-pcre. If I run sqlite3 interactively, I can successfully run my query after executing .load /usr/lib/sqlite3/pcre.so
Attempting to load the library on the command line produces an error:
sqlite3 my.db ".load /usr/lib/sqlite3/pcre.so;select * from foo where description REGEXP 'Some Expression'"
Error: /usr/lib/sqlite3/pcre.so;select.so: cannot open shared object file: No such file or directory
How do I include the .load with my command-line query? Can I put the library in an rc file somewhere?
Seemed obvious once I conceptualized the question about putting options in an rc file:
$ cat ~/.sqliterc
.load /usr/lib/sqlite3/pcre.so
Related
I am trying to create a sealed command for my build pipeline which inserts data and quits.
So far I have created my data files
things-to-import-001.sql and 002 etc, which contains all the INSERT statements I'd like to run, with a file per table.
I have created a command file to run them
-- import-all.sql
.read ./things-to-import-001.sql
.read ./things-to-import-002.sql
.quit
However when I run my command
sqlite3 -init ./import-all.sql ./database.sqlite
..the data is inserted, but the program remains running and shows the sqlite> prompt, despite the .quit command. I have also tried using .exit 0.
From the sqlite3 --help
-init FILENAME read/process named file
Docs: https://www.sqlite.org/cli.html#reading_sql_from_a_file
How can I tell sqlite to exit once my inserts have finished?
I have managed to find a dirty workaround for this issue.
I have updated my import file to include a bad command, and executed using -bail to quit on first error.
-- import-all.sql
.read ./things-to-import-001.sql
.read ./things-to-import-002.sql
.fakeErrorToQuitWithBail
Then you can execute with
sqlite3 -init import-all.sql -bail
and it should quit with
Error: unknown command or invalid arguments: "fakeErrorToQuitWithBail". Enter ".help" for help
Try using ".exit" at the place of ".quit". For some reason SQLite dont doccumented this commands.
https://www.tutorialspoint.com/sqlite/sqlite_commands.htm
I am running exist-db on windows and would like to execute an external windows program.
This works inside the normal windows shell:
C:\path\to\webGLRtiMaker.exe C:\path\to\ImageFile.rti -q 90
And I would like to execute the same program from my xquery script (I have uploaded all the needed files according to my specified paths to my exist-db):
xquery version '3.1';
import module namespace process="http://exist-db.org/xquery/process" at "java:org.exist.xquery.modules.process.ProcessModule";
declare variable $options := '<options>
<workingDir>/db/apps/test-project/images</workingDir>
<stdin><line>/db/apps/execute-test/images/image1.rti -q 90</line></stdin>
</options>';
(:process:execute($webRtiMaker, <options/>):)
process:execute('/db/apps/execute-test/resources/RTIMaker/webGLRtiMaker.exe', $options)
Even if I only execute the program without parameters (if I execute it inside windows I get the parameters as overview inside the command prompt so I should also receive some kind of output):
process:execute('/db/apps/execute-test/resources/RTIMaker/webGLRtiMaker.exe', <options/>)
But I get the error:
exerr:ERROR An IO error occurred while executing the process /db/apps/execute-test/resources/RTIMaker/webGLRtiMaker.exe: Cannot run program "/db/apps/execute-test/resources/RTIMaker/webGLRtiMaker.exe": CreateProcess error=2, The System cannot find the file ...
I used this as reference: Execute External Process
What am I doing wrong?
I have not tried this recently, but try the following:
import module namespace process="http://exist-db.org/xquery/process" at "java:org.exist.xquery.modules.process.ProcessModule";
let $cmd := 'C:\path\to\webGLRtiMaker.exe C:\path\to\ImageFile.rti -q 90'
return
<results>{process:execute($cmd, <options/>)}</results>
There is an article at the XQuery WikiBook about it.
Unfortunately it is not possible to start an executable that is stored inside the database. The java API requires direct access to a file on the filesystem, and the '/db/....' path is not.
Sorry for a basic question. I'm trying run a R script called cuffdiff_gtf_attributes (please find it at enter link description here in R 3.3.1 installed on the Windows 7. The script is started with the below line:
#!/usr/bin/env Rscript
When I type cuffdiff_gtf_attributes in R, it says Error: object 'cuffdiff_gtf_attributes' not found. Also, I tried Rscript cuffdiff_gtf_attributes that returned me: Error: unexpected symbol in "Rscript cuffdiff_gtf_attributes".
Moreover, I tried source('cuffdiff_gtf_attributes.R')that seems to work and returned the usage of the script as bellow
Error:
usage: cuffdiff_gtf_attributes --input=<inputGTF> [--output=outputGTF] | --help
But, when I add the arguments as source('cuffdiff_gtf_attributes.R') --input=file.gtf, it says that: Error: object 'file.gtf' not found. I also tried this command as source('cuffdiff_gtf_attributes.R') --input file.gtf, it says that Error: unexpected symbol in "source('cuffdiff_gtf_attributes.R') --input file.gtf"
Sorry, I couldn't post a sample GTF file, you can find a short sample of it at enter link description here
Everything is the current path. Could you please help me out to execute the script?
Thanks in advance
This is a script file. You should run using Rscript instead for Rgui.exe. From a command prompt, navigate to the directory where file.gtf is and run:
"%Programfiles%\R\R-3.3.3\bin\Rscript" cuffdiff_gtf_attributes.R --input=file.gtf
I created a new config file called "compare.conf" & placed it in 'conf' folder.
When I run the below command, I get the following error:
PS C:\Projects\Learning\Test\flyway-3.2.1> .\flyway -configFile=conf\compare.conf info
Flyway 3.2.1 by Boxfuse
ERROR: Unable to load config file: C:\Projects\Learning\Test\flyway-3.2.1\conf\compare
If I run the same command with absolute URL like below, it works fine. Is this a known issue in Flyway?
PS C:\Projects\Learning\Test\flyway-3.2.1> .\flyway -configFile=C:\Projects\Learning\Test\flyway-3.2.1\conf\compare.conf info
Use System property switch -Dflyway.configFile=xxx.properties instead of command line switch -configFile=xxx.properties
I have written a QT GUI program where pressing a button will execute a .sh script. The contents of the script is-
echo -e 'attach database 'testdatabase.db' as 'aj';\n.separator ","\n.import ora_exported.csv qt_ora_exported' | sqlite3 testdatabase.db
basically the script will import a .csv to an sqlite database. And when the script file (script.sh) is run manually from linux terminal ($./script.sh) it successfully imports the .csv file into the database table.
But, when I call the script from my QT program
void MainWindow::on_importButton_clicked()
{
QProcess process;
process.startDetached("/bin/sh",QStringList()<<"/home/aj/script.sh");
}
it compiles successfully but gives an error message in console when the button is pressed at runtime.
Error: near line 1: near "-": syntax error
Error: cannot open "ora_exported.csv"
what could be causing this ???
EDITED
I have changed my .sh script now to--
echo -e 'attach database 'testdatabase.db' as 'aj';\n.separator ","\n.import /home/aj/ora_exported.csv qt_ora_exported' | sqlite3 testdatabase.db
Thus providing the path to my ora_exported.csv. As a result the runtime error [Error: cannot open "ora_exported.csv"] has gone but the other message [Error: near line 1: near "-": syntax error] is still coming.
Same as was observed in previous case, using ./script.sh is successfully importing data to sqlite3 db table file but QProcess is unable to.
echo is a built in command of a shell that may behave differently.
E.g. take this test script: echotest.sh
echo -e "123"
Now we can compare different results:
$ bash echotest.sh
123
$ zsh echotest.sh
123
$ dash echotest.sh
-e 123
You are probably on some Ubuntu-like OS, where /bin/sh redirects to dash. That would explain the error around "-". So if you are using echo, set you shell specificially or ensure that your script works on all common shells.
Additionally, you are messing up your quotations
echo -e 'attach database 'testdatabase.db' as 'aj';\n.separator ","\n.import /home/aj/ora_exported.csv qt_ora_exported'
results in (no quotations in the first line)
attach database testdatabase.db as aj;
.separator ","
.import /home/aj/ora_exported.csv qt_ora_exported
but you pobably want
echo -e "attach database 'testdatabase.db' as 'aj';\n.separator ','\n.import /home/aj/ora_exported.csv qt_ora_exported"
It looks strange that you are using external script to update database!
why you don't pass "ora_exported.csv" file name as a script argument? This would help solve the problem.
I was talking (typing) about this solution:
void MainWindow::on_importButton_clicked()
{
QProcess::startDetached("/bin/sh",
QStringList()<<"/home/aj/script.sh",
"<location of: 'ora_exported.csv' file>");
}