When I tried to close Rstudio in Mac I get the following error:
Error in as.POSIXlt(x, tz = tz(x)) :
argument "x" is missing, with no default
Have not tried to reisntall Rstudio as i am hoping can fix the issue.
this are the packages loaded in session:
library(readr)
library(dplyr)
library(lubridate)
library(ggplot2)
library(scales)
These are the objects in the global env:
> ls()
[1] "csv" "csv2" "csv3" "p"
>
Have tried base::q() and base::quit() and get the same error.
sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] shiny_1.0.3 scales_0.4.1 ggplot2_2.2.1 bindrcpp_0.2 dplyr_0.7.1 lubridate_1.6.0 readr_1.1.1
loaded via a namespace (and not attached):
[1] Rcpp_0.12.11 compiler_3.4.0 colourpicker_0.3 plyr_1.8.4 bindr_0.1 shinyjs_0.9.1
[7] tools_3.4.0 digest_0.6.12 jsonlite_1.5 tibble_1.3.3 gtable_0.2.0 pkgconfig_2.0.1
[13] rlang_0.1.1 rstudioapi_0.6 curl_2.7 stringr_1.2.0 knitr_1.16 htmlwidgets_0.8
[19] hms_0.3 grid_3.4.0 glue_1.1.1 R6_2.2.2 magrittr_1.5 htmltools_0.3.6
[25] assertthat_0.2.0 mime_0.5 colorspace_1.3-2 xtable_1.8-2 httpuv_1.3.3 labeling_0.3
[31] V8_1.5 stringi_1.1.5 miniUI_0.1.1 lazyeval_0.2.0 munsell_0.4.3
This could be because lubridate expects input but base::date() does not need it. Removing lubridate might solve the issue, or using base::date() instead. See this thread for a discussion on this issue.
I hope this helps!
Related
When I do anything with my variables, for example: Y<-cbind(bank)or liq <-Liq, the error object not found appears. I guess, something is wrong with reading the excel file. I use library("readxl") and h<-read_xlsx("banks_NA.xlsx")to download the dataset.
Here is info about the session and data:
`>ls(h)
[1] "Da" "Dh_a" "Dh_l1" "Dh_m1" "Dl1" "Dm1"
[7] "K" "La_a" "La_l1" "La_m1" "Lh_a" "Lh_l1"
[13] "Lh_m1" "Liq" "Ll1" "Lm1" "Mac" "Na_Da"
[19] "OtR" "OtR_a" "PrT" "Pro" "S" "S_Bl"
[25] "S_Bo" "S_S" "bank" "date" "dis" "foreign"
[31] "live" "rD" "rL" "rQi" "rS" "rSc"
[37] "rSi" "region" "state" "ta"`
`> sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
other attached packages:
[1] sandwich_2.4-0 readxl_1.1.0 plm_1.6-6
[4] openxlsx_4.0.17 gplots_3.0.1 Formula_1.2-2
[7] foreign_0.8-70 class_7.3-14 caTools_1.17.1
[10] car_3.0-0 carData_3.0-1
loaded via a namespace (and not attached):
[1] Rcpp_0.12.16 cellranger_1.1.0 pillar_1.2.2
[4] compiler_3.5.0 forcats_0.3.0 bitops_1.0-6
[7] miscTools_0.6-22 tools_3.5.0 tibble_1.4.2
[10] nlme_3.1-137 lattice_0.20-35 rlang_0.2.0
[13] cli_1.0.0 maxLik_1.3-4 curl_3.2
[16] haven_1.1.1 rio_0.5.10 gtools_3.5.0
[19] lmtest_0.9-36 grid_3.5.0 data.table_1.10.4-3
[22] bdsmatrix_1.3-3 gdata_2.18.0 magrittr_1.5
[25] MASS_7.3-50 assertthat_0.2.0 abind_1.4-5
[28] KernSmooth_2.23-15 utf8_1.1.3 crayon_1.3.4
[31] zoo_1.8-1`
Yesterday, I did exactly the same operations and everything worked perfectly. Today I decided to update R studio and now everything is corrupted...
I am trying to run (in R) this off-the-shelf example from the Resource Map function help page:
library(bupaR)
library(eventdataR)
data(patients)
resource_map(patients)
and somehow it is returning this error:
Error: UQ() can only be used within a quasiquoted argument
Can someone help me understand and propose a fix as well? Is it something with my R/Rstudio, because this example comes straight from the "resource_map" help page.
Here is the sessioninfo:
R version 3.4.3 (2017-11-30) Platform: x86_64-apple-darwin15.6.0
(64-bit) Running under: macOS High Sierra 10.13.3
Matrix products: default BLAS:
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK:
/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
locale: [1]
en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] stats graphics grDevices utils
datasets methods base
other attached packages: [1] bindrcpp_0.2 xesreadR_0.2.2
processmonitR_0.1.0 processmapR_0.2.1 eventdataR_0.1.2
petrinetR_0.1.0 [7] edeaR_0.7.2 bupaR_0.3.2
loaded via a namespace (and not attached): [1] Rook_1.1-1
purrr_0.2.4 ggthemes_3.4.0 colorspace_1.3-2
viridisLite_0.3.0 miniUI_0.1.1 [7] htmltools_0.3.6
yaml_2.1.17 plotly_4.7.1 XML_3.98-1.10
rlang_0.2.0 pillar_1.2.1 [13] glue_1.2.0
RColorBrewer_1.1-2 bindr_0.1 plyr_1.8.4
stringr_1.3.0 munsell_0.4.3 [19] gtable_0.2.0
visNetwork_2.0.3 htmlwidgets_1.0 forcats_0.3.0
httpuv_1.3.6.2 DiagrammeR_0.9.2 [25] Rcpp_0.12.15
xtable_1.8-2 readr_1.1.1 scales_0.5.0
jsonlite_1.5 rgexf_0.15.3 [31] mime_0.5
gridExtra_2.3 brew_1.0-6 ggplot2_2.2.1 hms_0.4.1
digest_0.6.15 [37] stringi_1.1.6 dplyr_0.7.4
shiny_1.0.5 grid_3.4.3 influenceR_0.1.0
tools_3.4.3 [43] magrittr_1.5 lazyeval_0.2.1
tibble_1.4.2 tidyr_0.8.0 pkgconfig_2.0.1 xml2_1.2.0
[49] data.table_1.10.4-3 downloader_0.4 lubridate_1.7.3
httr_1.3.1 assertthat_0.2.0 rstudioapi_0.7 [55]
viridis_0.5.0 R6_2.2.2 igraph_1.1.2
shinyTime_0.2.1 compiler_3.4.3
Thanks!
im exploring the koRpus package in R on macOS, in trying to use the treetag function on the following object:
text
[1] "Because I could not stop for Death -" "He kindly stopped for me -"
[3] "The Carriage held but just Ourselves -" "and Immortality"
using the following syntax
> tagged.text <- treetag(as.vector(paste(text, collapse = '')), format = "obj", debug = TRUE)
i get the following error
file: /var/folders/bt/sdf_vz6d3qbd188c7tkz50gw0000gn/T//RtmpoatWov/tempTextFromObject12d3d169614b6.txt
sys.tt.call: /Applications/treetagger/cmd/tree-tagger-english /var/folders/bt/sdf_vz6d3qbd188c7tkz50gw0000gn/T//RtmpoatWov/tempTextFromObject12d3d169614b6.txt
Error in matrix(unlist(strsplit(tagged.text, "\t")), ncol = 3, byrow = TRUE, :
'data' must be of a vector type, was 'NULL'
when i try the emboldened command above on its equivalent, i get this
matrix(unlist(strsplit(paste(text, collapse = ''), "\t")))
[,1] [1,] "Because I could not stop for Death -He kindly stopped for me
-The Carriage held but just Ourselves -and Immortality"
my workspace is as follows
sessionInfo() R version 3.4.2 (2017-09-28) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS High Sierra
10.13.1
Matrix products: default BLAS:
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK:
/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
locale: [1]
en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] stats graphics grDevices utils
datasets methods base
other attached packages: [1] quanteda_0.99.12 koRpus_0.10-2
data.table_1.10.4-3 scales_0.5.0 [5] purrr_0.2.4
readr_1.1.1 tidyr_0.7.2 tibble_1.3.4 [9]
tidyverse_1.1.1 gutenbergr_0.1.3 ggplot2_2.2.1
stringr_1.2.0 [13] dplyr_0.7.4 janeaustenr_0.1.5
tidytext_0.1.4
loaded via a namespace (and not attached): [1] reshape2_1.4.2
haven_1.1.0 lattice_0.20-35 colorspace_1.3-2 [5]
htmltools_0.3.6 SnowballC_0.5.1 yaml_2.1.14
rlang_0.1.2 [9] foreign_0.8-69 glue_1.2.0
modelr_0.1.1 readxl_1.0.0 [13] bindrcpp_0.2
bindr_0.1 plyr_1.8.4 munsell_0.4.3 [17]
gtable_0.2.0 cellranger_1.1.0 rvest_0.3.2
psych_1.7.8 [21] evaluate_0.10.1 knitr_1.17
forcats_0.2.0 parallel_3.4.2 [25] broom_0.4.2
tokenizers_0.1.4 Rcpp_0.12.13 backports_1.1.1 [29]
RcppParallel_4.3.20 jsonlite_1.5 fastmatch_1.1-0
mnormt_1.5-5 [33] hms_0.3 digest_0.6.12
stringi_1.1.5 bookdown_0.5 [37] grid_3.4.2
rprojroot_1.2 tools_3.4.2 magrittr_1.5 [41]
lazyeval_0.2.1 pkgconfig_2.0.1 Matrix_1.2-11 xml2_1.1.1
[45] lubridate_1.7.1 assertthat_0.2.0 rmarkdown_1.6
httr_1.3.1 [49] R6_2.2.2 nlme_3.1-131
compiler_3.4.2
I created a MonetDBLite database yesterday, populated it, and was accessing it with dplyr, however this morning I don't seem able to use dplyr.
Here's my connection:
statcast_db <- MonetDBLite::src_monetdblite("/Users/williampetti/statcast_database/statcast_db_Monet", create = FALSE)
And here's a simple query for the statcast_17 table:
statcast_db %>%
tbl("statcast_17") %>%
select(game_date) %>%
distinct() %>%
collect() %>%
tail(n = 1)
Yesterday, this worked fine. This morning, I get this error:
Error in UseMethod("db_query_fields") :
no applicable method for 'db_query_fields' applied to an object of class "MonetDBEmbeddedConnection"
If I use a simple dbGetQuery call, however, it works fine:
> dbGetQuery(statcast_db$con, "SELECT game_date FROM statcast_17 ORDER BY game_date DESC LIMIT 1")
game_date
1 2017-04-29
Here's my session info:
> sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.6 (El Capitan)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] xml2_1.1.1 baseballr_0.3.1 RSQLite_1.0.0 pacman_0.4.1
[5] dplyr_0.5.0 purrr_0.2.2 readr_1.0.0 tidyr_0.6.0
[9] tibble_1.2 ggplot2_2.2.1 tidyverse_1.0.0 magrittr_1.5
[13] MonetDBLite_0.3.1 RMySQL_0.10.9 DBI_0.5-1
loaded via a namespace (and not attached):
[1] splines_3.3.1 lattice_0.20-33 colorspace_1.2-6
[4] htmltools_0.3.5 mgcv_1.8-12 chron_2.3-47
[7] XML_3.98-1.6 survival_2.40-1 hexbin_1.27.1
[10] foreign_0.8-66 RColorBrewer_1.1-2 plyr_1.8.4
[13] stringr_1.2.0 munsell_0.4.3 gtable_0.2.0
[16] rvest_0.3.2 XML2R_0.0.6 codetools_0.2-14
[19] latticeExtra_0.6-28 knitr_1.14 reldist_1.6-6
[22] htmlTable_1.7 Rcpp_0.12.9 acepack_1.4.1
[25] scales_0.4.1 pitchRx_1.8.2 Hmisc_4.0-0
[28] gridExtra_2.2.1 digest_0.6.11 stringi_1.1.3
[31] grid_3.3.1 tools_3.3.1 bitops_1.0-6
[34] lazyeval_0.2.0 RCurl_1.95-4.8 Formula_1.2-1
[37] cluster_2.0.4 MASS_7.3-45 Matrix_1.2-6
[40] data.table_1.9.6 lubridate_1.6.0 httr_1.2.1
[43] assertthat_0.1 R6_2.1.3 rpart_4.1-10
[46] nnet_7.3-12 nlme_3.1-128
I just replied to a similar question this morning after figuring out that the order in which you load MonetDBLite matters. I came across this question trying to figure out why it does matter. I was having the same type of Error in UseMethod problems as BillPetti. Making sure MonetDBLite loads after dplyr and dbplyr has resolved the issue for me. Here's the link to that other answer:
https://stackoverflow.com/a/53307673/3705612
im tryring to run dcc.est from the ccgarch-package.
Even though I installed the package and attached it with library(ccgarch), I get the following error:
library(ccgarch)
dcc <- dcc.est(dvar, param)
Error: could not find function "dcc.est"
I also tried the following:
dcc <- ccgarch::dcc.est(dvar, param)
Error: object 'dcc.est' is not exported by 'namespace:ccgarch'
Accordingly to the vignette of ccgarch version 0.2.3 (https://cran.r-project.org/web/packages/ccgarch/ccgarch.pdf) , dcc.est is part of the package. What am I doing wrong?
See my sessionInfobelow:
> sessionInfo()
R version 3.3.2 (2016-10-31)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 LC_MONETARY=German_Germany.1252
[4] LC_NUMERIC=C LC_TIME=German_Germany.1252
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] pracma_1.9.5 kerdiest_1.2 evir_1.7-3 chron_2.3-48 date_1.2-35
[6] fGarch_3010.82.1 fBasics_3011.87 timeSeries_3022.101.2 timeDate_3012.100 rugarch_1.3-6
[11] tsDyn_0.9-44 ccgarch_0.2.3 gdata_2.17.0 gtools_3.5.0 tidyr_0.6.0
[16] dplyr_0.5.0
loaded via a namespace (and not attached):
[1] rgl_0.96.0 Rcpp_0.12.8 mvtnorm_1.0-5 lattice_0.20-34
[5] zoo_1.7-14 assertthat_0.1 digest_0.6.10 lmtest_0.9-34
[9] foreach_1.4.3 mime_0.5 truncnorm_1.0-7 R6_2.2.0
[13] plyr_1.8.4 tseriesChaos_0.1-13 ggplot2_2.2.0 lazyeval_0.2.0
[17] misc3d_0.8-4 fracdiff_1.4-2 nloptr_1.0.4 SkewHyperbolic_0.3-2
[21] Matrix_1.2-7.1 htmlwidgets_0.8 munsell_0.4.3 shiny_0.14.2
[25] numDeriv_2016.8-1 httpuv_1.3.3 DistributionUtils_0.5-1 mnormt_1.5-5
[29] forecast_7.3 urca_1.3-0 mgcv_1.8-15 htmltools_0.3.5
[33] vars_1.5-2 nnet_7.3-12 Rsolnp_1.16 multicool_0.1-10
[37] expm_0.999-0 tibble_1.2 quadprog_1.5-5 codetools_0.2-15
[41] MASS_7.3-45 GeneralizedHyperbolic_0.8-1 grid_3.3.2 nlme_3.1-128
[45] jsonlite_1.1 xtable_1.8-2 gtable_0.2.0 DBI_0.5-1
[49] magrittr_1.5 scales_0.4.1 KernSmooth_2.23-15 tseries_0.10-36
[53] xts_0.9-7 sandwich_2.3-4 spd_2.0-1 iterators_1.0.8
[57] tools_3.3.2 ks_1.10.4 colorspace_1.3-2 knitr_1.15.1
If you look at the NAMESPACE you see that dcc.est is commented out (it may have be replaced by dcc.estimation - just a guess, I've never used the package?).
This means it is not exported by the package, but it's still there, only as an internal function. You can access internal functions by using 3 colons
ccgarch:::dcc.est
As it's in the documentation I think somewhere along the line of updates and releases someone forgot to remove it properly, or un-comment it again in the export list.