I'm using caret to train earth models like so:
test <- train(Y ~ X1+X2,table.needed,method = "earth")
which worked fine previously. However, now I am getting the following error:
Error in .C("ForwardPassR", fullset = as.integer(fullset), bx = matrix(0, :
"ForwardPassR" not available for .C() for package "earth"
This also happens when I call earth directly:
earth(Y ~ X1+X2,data = table.needed)
From other questions, I surmise that this is something with the underlying C - does anyone know how to fix the error and get the package running again?
I've attached the sessionInfo() call below:
R version 3.4.0 (2017-04-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows Server >= 2012 x64 (build 9200)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] randomForest_4.6-12 broom_0.4.2 timekit_0.3.0 readr_1.1.1 hts_5.0
[6] matrixcalc_1.0-3 Matrix_1.2-9 SparseM_1.77 forecast_8.0 earth_4.5.0
[11] plotmo_3.3.3 TeachingDemos_2.10 plotrix_3.6-5 doParallel_1.0.10 iterators_1.0.8
[16] foreach_1.4.3 prophet_0.1.1 Rcpp_0.12.11 zoo_1.8-0 caretEnsemble_2.0.0
[21] caret_6.0-76 ggplot2_2.2.1 lattice_0.20-35 reshape2_1.4.2 dtplyr_0.0.2
[26] data.table_1.10.4 dplyr_0.5.0
loaded via a namespace (and not attached):
[1] tidyr_0.6.3 psych_1.7.5 assertthat_0.2.0 digest_0.6.12 lmtest_0.9-35
[6] R6_2.2.1 plyr_1.8.4 MatrixModels_0.4-1 stats4_3.4.0 rlang_0.1.1
[11] lazyeval_0.2.0 minqa_1.2.4 car_2.1-4 fracdiff_1.4-2 TTR_0.23-1
[16] nloptr_1.0.4 splines_3.4.0 lme4_1.1-13 foreign_0.8-68 stringr_1.2.0
[21] munsell_0.4.3 compiler_3.4.0 rstan_2.15.1 mnormt_1.5-5 mgcv_1.8-17
[26] nnet_7.3-12 tibble_1.3.3 gridExtra_2.2.1 quadprog_1.5-5 codetools_0.2-15
[31] MASS_7.3-47 ModelMetrics_1.1.0 grid_3.4.0 nlme_3.1-131 gtable_0.2.0
[36] DBI_0.6-1 magrittr_1.5 StanHeaders_2.15.0-1 scales_0.4.1 quantmod_0.4-9
[41] stringi_1.1.5 pbapply_1.3-2 tseries_0.10-41 timeDate_3012.100 xts_0.9-7
[46] tools_3.4.0 hms_0.3 pbkrtest_0.4-7 inline_0.3.14 colorspace_1.3-2
[51] quantreg_5.33
There is no version information about the earth package.
Anyway, I encounter with the same error with earth_4.5.0 and the error disappears when I update it to earth_4.5.1.
So I suggest you update or reinstall the package.
Related
I am using the package epiR to calculate measures of association (rate ratio and attributable risk). Results are outputted to a list. I want to get these estimates into one overall dataframe - I thought Broom could do this - see here.
This is what I have attached:
R version 3.5.3 (2019-03-11)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] forcats_0.4.0 stringr_1.4.0 purrr_0.3.2 readr_1.3.1 tidyr_0.8.3 tibble_3.0.1 ggplot2_3.1.1
[8] tidyverse_1.2.1 dplyr_0.8.1 broom_0.5.6
loaded via a namespace (and not attached):
[1] Rcpp_1.0.1 cellranger_1.1.0 pillar_1.4.4 compiler_3.5.3 plyr_1.8.4 tools_3.5.3 jsonlite_1.6
[8] lubridate_1.7.4 lifecycle_0.2.0 nlme_3.1-137 gtable_0.3.0 lattice_0.20-38 pkgconfig_2.0.2 rlang_0.4.5
[15] Matrix_1.2-17 cli_1.1.0 rstudioapi_0.10 haven_2.1.0 withr_2.1.2 xml2_1.2.0 httr_1.4.0
[22] generics_0.0.2 vctrs_0.2.4 hms_0.4.2 grid_3.5.3 tidyselect_0.2.5 glue_1.3.1 R6_2.4.0
[29] readxl_1.3.1 modelr_0.1.4 magrittr_1.5 backports_1.1.4 scales_1.0.0 ellipsis_0.3.0 rvest_0.3.4
[36] assertthat_0.2.1 colorspace_1.4-1 stringi_1.4.3 lazyeval_0.2.2 munsell_0.5.0 crayon_1.3.4
>
This is the code I have run:
tabh7 <- table(ispa.h7$mat2,ispa.h7$cov,ispa.h7$Sex)
rh7 <- epi.2by2(dat = tabh7, method = "cohort.count",
conf.level = 0.95, units = 100, outcome = "as.columns")
tidy(rh7, parameters = "moa")
And this is the message:
Error: No tidy method for objects of class epi.2by2
I have tried deleting my .RHistory. I never save my workspaces. What could be the problem?
I'm trying to run sparklyr from my local environment to replicate a production environment. However, I can't even get started. I successfully installed the latest version of Spark using spark_install(), but when trying to run spark_connect() I get this vague and unhelpful error.
> library(sparklyr)
> spark_installed_versions()
spark hadoop dir
1 2.3.1 2.7 C:\\Users\\...\\AppData\\Local/spark/spark-2.3.1-bin-hadoop2.7
> spark_connect(master = "local")
Error in if (is.na(a)) return(-1L) : argument is of length zero
Here is what my session info looks like.
> sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] sparklyr_0.8.4.9003
loaded via a namespace (and not attached):
[1] Rcpp_0.12.17 dbplyr_1.2.1 compiler_3.5.0 pillar_1.2.3 later_0.7.3
[6] plyr_1.8.4 bindr_0.1.1 base64enc_0.1-3 tools_3.5.0 digest_0.6.15
[11] jsonlite_1.5 tibble_1.4.2 nlme_3.1-137 lattice_0.20-35 pkgconfig_2.0.1
[16] rlang_0.2.1 psych_1.8.4 shiny_1.1.0 DBI_1.0.0 rstudioapi_0.7
[21] yaml_2.1.19 parallel_3.5.0 bindrcpp_0.2.2 stringr_1.3.1 dplyr_0.7.5
[26] httr_1.3.1 rappdirs_0.3.1 rprojroot_1.3-2 grid_3.5.0 tidyselect_0.2.4
[31] glue_1.2.0 R6_2.2.2 foreign_0.8-70 reshape2_1.4.3 purrr_0.2.5
[36] tidyr_0.8.1 magrittr_1.5 backports_1.1.2 promises_1.0.1 htmltools_0.3.6
[41] assertthat_0.2.0 mnormt_1.5-5 mime_0.5 xtable_1.8-2 httpuv_1.4.3
[46] config_0.3 stringi_1.1.7 lazyeval_0.2.1 broom_0.4.4
Well, with a bit of guessing I was able to solve my problem. I had to specify the "SPARK_HOME" environment manually.
spark_installed_versions()[1, 3] %>% spark_home_set()
I am trying to run a flexdashboard with a couple plotly graphs, but I receive the error:
Error in switch(options$dev, pdf = ".pdf", jpeg = ".jpeg", ".png") :
EXPR must be a length 1 vector Calls: <Anonymous> ... fun ->
withVisible -> knit_print -> html_screenshot
The example code I am running is a set of ggplotly example code.
Session info:
R version 3.3.1 (2016-06-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] grid stats graphics grDevices utils datasets methods base
other attached packages:
[1] maps_3.2.0 bindrcpp_0.2 highcharter_0.5.0 quantmod_0.4-12 TTR_0.23-3
[6] xts_0.10-0 zoo_1.8-0 formattable_0.2.0.1 officer_0.2.1 flextable_0.4.2
[11] gridExtra_2.3 knitr_1.17 kableExtra_0.7.0 dplyr_0.7.4 lubridate_1.6.0
[16] rstudioapi_0.7 RODBC_1.3-15 plotly_4.7.1 ggplot2_2.2.1
loaded via a namespace (and not attached):
[1] httr_1.3.1 tidyr_0.7.2 jsonlite_1.5 viridisLite_0.2.0 R.utils_2.6.0
[6] shiny_1.0.5 assertthat_0.2.0 yaml_2.1.16 gdtools_0.1.6 backports_1.1.1
[11] lattice_0.20-35 glue_1.1.1 rlist_0.4.6.1 uuid_0.1-2 digest_0.6.12
[16] rvest_0.3.2 colorspace_1.3-2 htmltools_0.3.6 httpuv_1.3.5 R.oo_1.21.0
[21] plyr_1.8.4 psych_1.7.8 pkgconfig_2.0.1 broom_0.4.2 flexdashboard_0.5.1
[26] purrr_0.2.3 xtable_1.8-2 scales_0.5.0 tibble_1.3.4 lazyeval_0.2.0
[31] mnormt_1.5-5 magrittr_1.5 mime_0.5 evaluate_0.10.1 R.methodsS3_1.7.1
[36] nlme_3.1-131 xml2_1.1.1 foreign_0.8-69 tools_3.3.1 data.table_1.10.4
[41] hms_0.3 stringr_1.2.0 munsell_0.4.3 zip_1.0.0 rlang_0.1.2
[46] htmlwidgets_1.0 crosstalk_1.0.0 igraph_1.1.2 base64enc_0.1-3 labeling_0.3
[51] rmarkdown_1.6 gtable_0.2.0 curl_3.0 reshape2_1.4.2 R6_2.2.2
[56] bindr_0.1 rprojroot_1.2 readr_1.1.1 stringi_1.1.5 parallel_3.3.1
[61] Rcpp_0.12.12 tidyselect_0.2.0
A similar error resulted in the case of this question on github, but I am not using shiny nor do I set a working directory in the code. Any ideas?
Overview
From All apps with htmlwidgets failing to render on Mac after #150, Yihui identified this error with version 1.17 of the knitr package.
This is the same version you currently have installed (see 'other attached packages' section in sessionInfo()). To squash the error message, please run the following code in r to update the knitr package to version 1.19:
# install package from CRAN
install.packages( pkgs = 'knitr' )
I have been struggling with encoding in twitteR.
The code below is the one I tried.
query <- list()
query <- c(query, "xxx")
query <- c(query, "xxx2")
for(i in 1:length(query)){
result<-searchTwitter(query[i],n=500, resultType ="recent",lang="en")
seo_tweets <- c(tweets,result)
seo_tweets <- unique(tweets)
}
But it ended up fetching the garbage data such as: Motor at #IAA2017 \xed��\xed�� https://t.c.
I have tried this code as well, but it did not work at all.
Sys.setlocale(category = "LC_ALL", locale = "English_United States.1252")
How can I solve this issue? Here's sessioninfo
sessionInfo()
R version 3.4.1 (2017-06-30)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] wordcloud_2.5 RColorBrewer_1.1-2 tm_0.7-1 NLP_0.1-11 stringr_1.2.0 h2o_3.10.5.3 rvest_0.3.2
[8] xml2_1.1.1 ggmap_2.6.1 ggplot2_2.2.1 twitteR_1.1.8 base64enc_0.1-3 ROAuth_0.9.6 ROCR_1.0-7
[15] gplots_3.0.1
loaded via a namespace (and not attached):
[1] gtools_3.5.0 slam_0.1-40 reshape2_1.4.2 lattice_0.20-35 colorspace_1.3-2 rlang_0.1.1 withr_2.0.0
[8] DBI_0.7 selectr_0.3-1 sp_1.2-5 bit64_0.9-7 jpeg_0.1-8 plyr_1.8.4 munsell_0.4.3
[15] gtable_0.2.0 devtools_1.13.3 caTools_1.17.1 RgoogleMaps_1.4.1 mapproj_1.2-5 memoise_1.1.0 curl_2.8.1
[22] parallel_3.4.1 proto_1.0.0 Rcpp_0.12.12 KernSmooth_2.23-15 geosphere_1.5-5 openssl_0.9.6 scales_0.4.1
[29] gdata_2.18.0 jsonlite_1.5 bit_1.1-12 rjson_0.2.15 png_0.1-7 digest_0.6.12 stringi_1.1.5
[36] grid_3.4.1 tools_3.4.1 bitops_1.0-6 magrittr_1.5 maps_3.2.0 lazyeval_0.2.0 RCurl_1.95-4.8
[43] tibble_1.3.3 httr_1.3.1 R6_2.2.2 git2r_0.19.0 compiler_3.4.1
Thank you.
None of my plots are appearing in my plot pane or anywhere else. I've tried dev.off but it doesn't work and i've doubled checked that plots is checked off in global options. Help please!
dev.off()
Error in dev.off() : cannot shut down device 1 (the null device)
sessionInfo()
R version 3.2.5 (2016-04-14)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] splines stats graphics grDevices utils datasets methods base
other attached packages:
[1] tsne_0.1-3 RColorBrewer_1.1-2 mgcv_1.8-17 nlme_3.1-131 SpadeR_0.1.1
[6] psych_1.7.3.21 fpc_2.1-10 clue_0.3-53 FD_1.0-12 geometry_0.3-6
[11] magic_1.5-6 abind_1.4-5 ape_4.1 ade4_1.7-6 stringr_1.2.0
[16] readxl_0.1.1 DT_0.2 rerddap_0.3.4 vegan_2.4-3 lattice_0.20-35
[21] permute_0.9-4 scales_0.4.1 leaflet_1.1.0 raster_2.5-8 sp_1.2-4
[26] lubridate_1.6.0 dplyr_0.5.0 purrr_0.2.2 readr_1.1.0 tidyr_0.6.1
[31] tibble_1.3.0 ggplot2_2.2.1 tidyverse_1.1.1
loaded via a namespace (and not attached):
[1] httr_1.2.1 jsonlite_1.4 modelr_0.1.0 shiny_1.0.2 assertthat_0.2.0
[6] stats4_3.2.5 robustbase_0.92-7 digest_0.6.12 rvest_0.3.2 colorspace_1.3-2
[11] htmltools_0.3.5 httpuv_1.3.3 Matrix_1.2-8 plyr_1.8.4 broom_0.4.2
[16] haven_1.0.0 mvtnorm_1.0-6 xtable_1.8-2 nnet_7.3-12 lazyeval_0.2.0
[21] mnormt_1.5-5 magrittr_1.5 mime_0.5 mclust_5.2.3 ncdf4_1.16
[26] MASS_7.3-45 class_7.3-14 forcats_0.2.0 xml2_1.1.1 foreign_0.8-67
[31] tools_3.2.5 data.table_1.10.4 hms_0.3 trimcluster_0.1-2 kernlab_0.9-25
[36] munsell_0.4.3 cluster_2.0.6 grid_3.2.5 htmlwidgets_0.8 crosstalk_1.0.0
[41] labeling_0.3 gtable_0.2.0 flexmix_2.3-13 DBI_0.6-1 reshape2_1.4.2
[46] R6_2.2.0 prabclus_2.2-6 knitr_1.15.1 modeltools_0.2-21 stringi_1.1.5
[51] parallel_3.2.5 Rcpp_0.12.10 DEoptimR_1.0-8 diptest_0.75-7