I keep getting the error message
could not find function "Qrefine".
Got the error message when I keyed in the following in RStudio. Could someone help, please?
Qrefine.out <- Qrefine(data, Q_mis, gate="AND", max.ite=50)
print(Qrefine.out)
plot(Qrefine.out)
Related
I am running the below code
pbmc.sce <- as.SingleCellExperiment(pbmc,assay = "RNA")
then i got this
Error in validityMethod(as(object, superClass)) :
object 'CsparseMatrix_validate' not found
in some old post, it ask us to update.packages("Matirx")
tried and didn't work for me. Your help would be much appreciated
I am learning programming languages for the first time. I am trying to combine tables in R using:
Trip_data <- bind_rows(oct_td, sep_td, aug_td,jul_td, jun_td,may_td)
and I get the following error:
Error in bind_rows():
! Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'symbol'
Run rlang::last_error() to see where the error occurred.
What does that means? and how do I solve it?
I have another set of tables and I managed to combine them just fine, I also ran that yesterday and I did not get an error.
I just try to use :
scRNA <- FindNeighbors(scRNA, dims = pc.num)
and
scRNA.counts <- Read10X(data.dir = "filtered_feature_bc_matrix")
and both of them gives error like :
Error in validityMethod(as(object, superClass)) : object 'Matrix_validate' not found
I guess these code totally run well in other's computer
so I wonder what's wrong with my code and how to fix it ?
Indeed, to solve the problem for you, it should be sufficient to do what #Mikael Jagan says:
update.packages("Matrix")
2nd thought: The above may not solve the problem entirely:
As there are other packages involved, some of these may have to be re-installed (after the updating of Matrix).
Can you post the output (or good summary of that if it's too long) of
traceback()
immediately after producing the error you are seeing?
I am reading 2 vcf files in to R. They load fine (I have used 3 different methods to do this (read.vcf, readVCF, and fread) and all are fine) however when I go on to try and do anything with 1 of the vcf files, the msg reads:
Error in unlist_as_integer(x#subscript) : object 'fancy_mseq' not found
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'from': object 'fancy_mseq' not found
Usually I just google error msgs but I can not find anything online about this. Does anyone have any idea what could be causing this error message? Whilst it's hard to be 100% sure because of the vcf format, I can't see anything wrong with the file when I call str(), head() or any other ways of looking at the data.
Thank you!
When trying to run this (or any other) command
xtabs(ugdata$response, ugdata$Equity, data=ugdata)
I keep receiving this error
Error in formula.default(object, env = baseenv()) : invalid formula
I have been looking around all day, including similar posts on this website, but I cannot find a solution to help me fix this.
Any help would be greatly appreciated
I believe the error is in the syntax. Please try:
xtabs(ugdata$response ~ ugdata$Equity, data = ugdata)