I would like to install the expss package but it keeps returning an error.
Looked around for other with similar problems and tried re-installing several packages but nothing seems to work. Does anyone have a suggestion how to fixed the problem?
So far i tried re-installing:
install.packages("stringr")
install.packages("knitr")
install.packages("checkmate")
install.packages("htmlwidgets")
install.packages("htmltools")
install.packages("htmlTable")
install.packages("expss")
But Rstudio keeps returning with and error :
Error: package or namespace load failed for ‘expss’:
object 'mtfrm' not found whilst loading namespace 'expss'
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/expss’
Warning in install.packages :
installation of package ‘expss’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/cl/5_wnd4b14y7b40zc80n1r3wdkcnbkn/T/RtmpdcLWsn/downloaded_packages’
According to this issue, the current version of expss won't install in versions of R before 4.2. This has recently been fixed in the development version. You could try:
updating your version of R to version 4.2 (probably the simplest solution if you don't need to keep an older version of R)
installing the development version of expss from GitHub: first install the remotes package, then remotes::install_github("gdemin/expss")
install an older version of expss (remotes::install_version("expss", "0.11.1"))
I would like to install the following package for R,
https://thlfi.github.io/read.gt3x/index.html
When I run this command on the R command line, I get the following message,
remotes::install_github("THLfi/read.gt3x")
Error in loadNamespace(name) : there is no package called ‘remotes’
I'm currently operating in macOS with the R version of 3.6.3.
When I tried to install the package ggm, a warning occurred as follows.
Warning in install.packages :
dependency ‘graph’ is not available
also installing the dependency ‘igraph’
Then when it completed installing, it seemed not to work either:
ERROR: compilation failed for package ‘igraph’
* removing ‘/usr/local/lib/R/3.6/site-library/igraph’
ERROR: dependencies ‘igraph’, ‘graph’ are not available for package ‘ggm’
* removing ‘/usr/local/lib/R/3.6/site-library/ggm’
What is happening? I have searched for this error and didn't find anything that helps. Please help me. I'll be much appreciated!
I had the same problem.
To install the package graph you need to install the latest version of Bioconductor (i.e. package called BioManager).
Then you install the package graph and then simply run the installation for the ggm package.
install.packages("BiocManager")
BiocManager::install("graph")
install.packages("ggm")
library(ggm)
The package is then loaded into your R enviroment.
I am getting this errors trying to install caret package:
ERROR: compilation failed for package ‘ddalpha’
* removing ‘/home/rspark/R/x86_64-redhat-linux-gnu-library/3.3/ddalpha’
Warning in install.packages :
installation of package ‘ddalpha’ had non-zero exit status
ERROR: dependency ‘ddalpha’ is not available for package ‘recipes’
* removing ‘/home/rspark/R/x86_64-redhat-linux-gnu-library/3.3/recipes’
Warning in install.packages :
installation of package ‘recipes’ had non-zero exit status
ERROR: dependency ‘recipes’ is not available for package ‘caret’
* removing ‘/home/rspark/R/x86_64-redhat-linux-gnu-library/3.3/caret’
Warning in install.packages :
installation of package ‘caret’ had non-zero exit status
Any ideas?
install.packages("ddalpha")
It gives the same error:
/usr/lib64/R/library/BH/include/boost/exception/exception.hpp:137: error: expected declaration before end of line
make: *** [AlphaProcedure.o] Error 1
ERROR: compilation failed for package ‘ddalpha’
* removing ‘/home/rspark/R/x86_64-redhat-linux-gnu-library/3.3/ddalpha’
I have found a solution.
I had the same problem. After installing caret with all its dependencies, ddalpha was not installed. Then I tried installing the package ddalpha alone. I got the message:
" There is a binary version available but the source version is later:
binary source needs_compilation
ddalpha 1.2.1 1.3.1 TRUE
Do you want to install from sources the package which needs compilation?
y/n: n"
Well, if I anwser yes, it doesn't work. But when I answer no, it does work. It looks like the new version has some problem, but the previous one works fine.
As Roman indicated in the comments, ddalpha and recipes are dependencies that aren't installed yet. You can manually install them as follows:
install.packages(c('ddalpha', 'recipes'))
Alternatively, you can tell the install.packages() command to grab the necessary packages during the install process.
install.packages('caret', dependencies=TRUE)
Or list them explicitly:
install.packages('caret', dependencies=c('ddalpha', 'recipes'))
Or, if you use an IDE such as RStudio, the package manager that's included will automatically handle these dependencies for you.
If these suggestions don't solve the problem, you may try updating your instance of R to the latest (3.4.1 as I write this). Also, ddalpha is dependent on the Rcpp package version 0.11.0 or greater, so you may update that package.
update.packages('Rcpp')
I was facing the same issues, and I had tried almost all the methods mentioned here. But the only one that worked for me was updating my IDE and that sorted it out.
I had the same issue, running
install.packages('caret', dependencies=TRUE)
from console solved it. I don't know why at the packages window install with "install dependencies" checked didn't work..
R studio: 2022.07.1
R: 3.6.3
I am trying to install this package http://bioconductor.org/packages/release/data/annotation/html/org.Hs.eg.db.html. When I try to load org.Hs.eg.db using library (org.Hs.eg.db) , gives me this
error: Error in library(org.Hs.eg.db) :
there is no package called ‘org.Hs.eg.db’
It says the packages are downloaded here:
The downloaded source packages are in
‘/tmp/Rtmpgy1ZJE/downloaded_packages’
What could be the reason for this?
If you run into this error nowadays you have to install the package using
BiocManager::install("org.Hs.eg.db")