I am trying to install "tidyverse" and I get the below error.
install.packages("tidyverse")
package ‘tidyverse’ is available as a source package but not as a binary
Warning in install.packages :
package ‘tidyverse’ is not available (as a binary package for R version 3.1.3)
The below is details about my Session.
sessionInfo()
R version 3.1.3 (2015-03-09)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.12.1 (unknown)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
loaded via a namespace (and not attached):
[1] tools_3.1.3
Would anyone have any idea what's missing here?
Thanks.
Did you try:
install.packages('tidyverse', dependencies=TRUE, type="source")
You may also want to try to update the version of R you are using.
if you are using ubuntu try this and then install tidyverse again
Required for many packages
sudo apt-get install -y libxml2-dev libcurl4-openssl-dev libssl-dev
Related
I am pretty desperate to install.packages("devtools").
However it allways fails with this error
Error: .onLoad failed in loadNamespace() for 'pkgload', details:
call: readRDS(nsInfoFilePath)
error: error reading from connection
Execution halted
ERROR: lazy loading failed for package ‘devtools’
* removing ‘/home/bjoern/R/x86_64-pc-linux-gnu-library/3.6/devtools’
Things I tried to fix this:
Add the dependencies = T argument
Following a suggestion by hadley wickham on github -> update rlang package
Try to run install.packages("pkgload") resulting in nearly exactly the same error (see below)
Completely removing R and reinstalling it
Additionally installing package following packages:
r-base-dev
r-cran-devtools
r-recommended
Updated all packages update.packages(ask = FALSE, checkBuilt = TRUE)
Error of install.packages("pkgload")
Error: package or namespace load failed for ‘pkgload’:
.onLoad failed in loadNamespace() for 'pkgload', details:
call: readRDS(nsInfoFilePath)
error: error reading from connection
Error: loading failed
Execution halted
ERROR: loading failed
I digged even deeper to the pkgload (which at least I hope is the only reason for the problem). I will check if manually (re)installing all imports and suggests from the CRAN page of pkgload does solve it.
Imports: desc, methods, pkgbuild, rlang, rprojroot, rstudioapi,
utils, withr Suggests: bitops, covr, Rcpp, testthat
My sessionInfo() output:
R version 3.6.3 (2020-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=de_DE.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=de_DE.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.6.3 tools_3.6.3
I still refuse to belief that it is impossibe to install devtools on ubuntu20
However at this point I take any straw
Solution Edit:
In short what fixed the issue for me was installing testthat package before. Thanks to comment by rui-barradas
install.packages("testthat")
install.packages("pkgload")
install.packages("devtools")
I am also on Ubuntu 20.04 but running R 4.0.0.
When trying to install a package, if it depends on another that was installed prior to R 4.0.0 I get an error message and the installation fails. This happens even if I set dependencies = TRUE in the call to install.packages.
Example: The command was
install.packages('pkgload')
I omit the first output lines, saying that the file was downloaded. Then, the relevant part.
installing source package ‘pkgload’ ...
** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading Error: package ‘testthat’ was installed before R 4.0.0: please re-install it
Execution halted ERROR: lazy loading failed for package ‘pkgload’
removing ‘/usr/local/lib/R/site-library/pkgload’
restoring previous ‘/usr/local/lib/R/site-library/pkgload’ Warning in install.packages : installation of package ‘pkgload’ had
non-zero exit status The downloaded source packages are in
‘/tmp/RtmpVxpbs0/downloaded_packages’
Correct way.
The right way of installing package pkgload was to run the sequence
install.packages('testthat')
install.packages('pkgload')
and the problem was solved.
Note that with other packages, it already happened to see this be a recursive issue. Imagine that package testthat depended (which it does not) on another package installed prior to R 4.0.0.
Annoying but solvable.
sessionInfo()
#R version 4.0.0 (2020-04-24)
#Platform: x86_64-pc-linux-gnu (64-bit)
#Running under: Ubuntu 20.04 LTS
#
#Matrix products: default
#BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
#LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
#
#locale:
# [1] LC_CTYPE=pt_PT.UTF-8 LC_NUMERIC=C
#[3] LC_TIME=pt_PT.UTF-8 LC_COLLATE=pt_PT.UTF-8
# [5] LC_MONETARY=pt_PT.UTF-8 LC_MESSAGES=pt_PT.UTF-8
# [7] LC_PAPER=pt_PT.UTF-8 LC_NAME=C
# [9] LC_ADDRESS=C LC_TELEPHONE=C
#[11] LC_MEASUREMENT=pt_PT.UTF-8 LC_IDENTIFICATION=C
#
#attached base packages:
#[1] stats graphics grDevices utils datasets
#[6] methods base
#
#other attached packages:
#[1] rvest_0.3.5 xml2_1.3.2 data.table_1.12.8
#
#loaded via a namespace (and not attached):
I had the same problems, and the solution was, at least in my case, Ubuntu 20.04.1 LTS (Focal Fossa) + R 4.0.2:
First (from terminal), install:
Step 1: sudo apt-get update -y
Step 2: sudo apt-get install -y libxml2-dev
Then from RStudio (setRepositories first, and choose 8 repositories) and install both packages:
Install xml2 package
install devtools
And works for me.
Cannot install dplyr in a R 3.2.1 version. I tried everything, I downloaded a previous version of dplyr in the laptop (0.4.2), I tried from other mirrors, but still cannot get it installed. The same with "tidyverse"
When I try it locally it says:
installing source package ‘dplyr’ ...
** package ‘dplyr’ successfully unpacked and MD5 sums checked
** libs sh: make: command not found ERROR: compilation failed for package ‘dplyr’
removing ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/dplyr’
restoring previous ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/dplyr’
Warning in install.packages : installation of package
‘/Users/x/Desktop/Master/R/dplyr_0.4.0.tar.gz’ had non-zero exit statu
That's the local error.
The online version of installing it says
it cannot be installed
my sessioninfo
R version 3.2.1 (2015-06-18) Platform: x86_64-apple-darwin10.8.0 (64-bit) Running under: OS X 10.8.5 (Mountain Lion) locale: [1] es_ES.UTF-8/es_ES.UTF-8/es_ES.UTF-8/C/es_ES.UTF-8/es_ES.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] remotes_2.0.4 loaded via a namespace (and not attached): [1] httr_1.4.0 R6_2.4.0 tools_3.2.1 RCurl_1.95-4.8 digest_0.6.10 bitops_1.0-6
Thanks!
I have recently updated both R (version 3.4.1) and RStudio (version 1.0.143) and I am now unable to install packages from Rstudio.
If I install a package in R directly using install.packages() it works fine.
If I try and install a package in Rstudio using either install.packages() or using the package install menu I get the error below. I have tried a few different packages, and have uninstalled and reinstalled both R and RStudio.
To get the error:
Run:
install.packages("lme4")
Output:
Installing package into ‘E:/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
also installing the dependencies ‘minqa’, ‘nloptr’, ‘RcppEigen’
Warning in install.packages :
lzma decoding result 10
Error in install.packages : error reading from connection
I am working off my personal computer, below is some of my system info:
Output from options("repos")
$repos
CRAN CRANextra
"https://cran.stat.auckland.ac.nz/" "http://www.stats.ox.ac.uk/pub/RWin"
attr(,"RStudio")
[1] TRUE
Output from sessionInfo()
R version 3.4.1 (2017-06-30)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_COLLATE=English_New Zealand.1252 LC_CTYPE=English_New Zealand.1252
LC_MONETARY=English_New Zealand.1252
[4] LC_NUMERIC=C LC_TIME=English_New Zealand.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.4.1 tools_3.4.1
This certainly is an issue with your connection:the proxies you are using and repositories configured in your RStudio. I was getting the same error when I was connected to US VPN from India.I disconnected VPN and restarted RStudio and it worked like a charm!
I had the same issue when I tried to install caret.
The best solution is to restart R studio.
Now the install.packages() works fine.
Just restart the R studio it works for me.
I had the same issue after I misspelled a package name when trying to install it. I restarted R Studio and then it worked.
Kindly select appropriate CRAN mirror in R Studio through following option:
Tools>>>Packages>>>CRAN Mirror(Select appropriate CRAN depending on your location).
A simple solution would be to download manually the zip folder of the package and install it with the command :
install.packages('package.zip', lib='destination_directory',repos = NULL)
Package zip : the path to the zip file of the package
Destination_directory: where the packages are installed by default like C:/Users/unknown/Documents/R/win-library/3.3
Hope it helps
I am trying to install the RWeka package.
install.packages("RWeka")
When I do this I get the following errors.
** package ‘RWeka’ successfully unpacked and MD5 sums checked
Need at least Java version 1.7/7.0.
ERROR: configuration failed for package ‘RWeka’
* removing ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RWeka’
Warning in install.packages :
installation of package ‘RWeka’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/qq/lyrzyp0119x1zmld972mbfz00000gn/T/Rtmp9xnRxx/downloaded_packages’
I have tried updating/altering Java but that does not seem to be the problem
Here is the session info:
R version 3.3.1 (2016-06-21)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.6 (El Capitan)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] rsconnect_0.4.3 tools_3.3.1
I have been trying to install RQuantLib in RStudio but want to know if someone found a workaround to get it up and running in MAC OSX Mavericks:
I have downloaded the OS X Snow Leopard binaries (because Mavericks are not available) from:
CRAN
When I run the following code, it says I have installed the package:
install.packages("/Volumes/3TB/R/RQuantLib_0.3.12.tgz", repos = NULL, type='source')
* installing *binary* package ‘RQuantLib’ ...
* DONE (RQuantLib)
However, when i try to load it, it fails:
library("RQuantLib")
Error : .onLoad failed in loadNamespace() for 'RQuantLib', details:
call: if (is.character(qc) && nchar(qc) > 1) {
error: missing value where TRUE/FALSE needed
In addition: Warning message:
running command 'bash -c 'type -p quantlib-config' 2>/dev/null' had status 1
Error: package or namespace load failed for ‘RQuantLib’
Can someone please help me out ?
Session info:
sessionInfo()
R version 3.1.2 (2014-10-31)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] blotter_0.8.19 grid_3.1.2 lattice_0.20-29 quantstrat_0.8.2 Rcpp_0.11.4 tools_3.1.2 zoo_1.7-11
You need to first install QuantLib on your computer in order to use RQuantLib.