I am getting following error when I try to install the RSelenium package.
install.packages("RSelenium")
Installing package into ‘C:/Users/nshukla/Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘binman’ is not available
also installing the dependencies ‘subprocess’, ‘semver’, ‘wdman’
There is a binary version available but the source version is later:
binary source needs_compilation
RSelenium 1.6.2 1.7.1 FALSE
Packages which are only available in source form, and may need compilation of C/C++/Fortran:
‘subprocess’ ‘semver’
These will not be installed
installing the source packages ‘wdman’, ‘RSelenium’
trying URL 'https://cran.rstudio.com/src/contrib/wdman_0.2.2.tar.gz'
Content type 'application/x-gzip' length 26342 bytes (25 KB)
downloaded 25 KB
trying URL 'https://cran.rstudio.com/src/contrib/RSelenium_1.7.1.tar.gz'
Content type 'application/x-gzip' length 4303990 bytes (4.1 MB)
downloaded 4.1 MB
ERROR: dependencies 'binman', 'subprocess', 'semver' are not available
for package 'wdman'
* removing 'C:/Users/nshukla/Documents/R/win-library/3.2/wdman'
Warning in install.packages : running command
'"C:/PROGRA~1/R/R-32~1.3/bin/x64/R" CMD INSTALL -1
"C:\Users\nshukla\Documents\R\win-library\3.2"
C:\Users\nshukla\AppData\Local\Temp\RtmpuAuA2g/downloaded_packages/wdman_0.2.2.tar.gz'
had status 1
Warning in install.packages : installation of package
‘wdman’ had non-zero exit status ERROR: dependencies 'wdman', 'binman'
are not available for package 'RSelenium'
* removing 'C:/Users/nshukla/Documents/R/win-library/3.2/RSelenium'
Warning in install.packages : running command
'"C:/PROGRA~1/R/R-32~1.3/bin/x64/R" CMD INSTALL -l
"C:\Users\nshukla\Documents\R\win-library\3.2"
C:\Users\nshukla\AppData\Local\Temp\RtmpuAuA2g/downloaded_packages/RSelenium_1.7.1.tar.gz'
had status 1
Warning in install.packages : installation of package
‘RSelenium’ had non-zero exit status
The binman package imports semver to parse semantic version strings. This depends on C++11. A version of R >= 3.3.0 is needed to install this. You would need to upgrade your version of R.
This worked for me:
install.packages('RSelenium', type="win.binary")
You could do this:
library(devtools)
install_version("binman", version = "0.1.0", repos = "https://cran.uni-muenster.de/")
install_version("wdman", version = "0.2.2", repos = "https://cran.uni-muenster.de/")
install_version("RSelenium", version = "1.7.1", repos = "https://cran.uni-muenster.de/")
This is the answer of FabianFox on the github page: https://github.com/ropensci/RSelenium/issues/172
Related
I am getting some error while installing package tstools.
Several other packages were installed correctly like(xts, forecast, MAPA, openxslx),
but this one causing trouble.
R version: 3.5.0
RStudio version: 1.1.447
CRAN: Indonesia
OS: windows 10
Here is the error log...
> install.packages("tstools")
Installing package into ‘C:/Users/pc_name/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependency ‘data.table’
There is a binary version available but the source version is later:
binary source needs_compilation
tstools 0.3.6 0.3.6.1 FALSE
Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘data.table’
These will not be installed
installing the source package ‘tstools’
trying URL 'https://cran.rstudio.com/src/contrib/tstools_0.3.6.1.tar.gz'
Content type 'application/x-gzip' length 960748 bytes (938 KB)
downloaded 938 KB
ERROR: dependency 'data.table' is not available for package 'tstools'
* removing 'C:/Users/pc_name/Documents/R/win-library/3.5/tstools'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘tstools’ had non-zero exit status
The downloaded source packages are in ‘C:\Users\pc_name\AppData\Local\Temp\Rtmp6l4hr7\downloaded_packages’
Have you tried using devtools?
install.packages("devtools")
devtools::install_github("trnnick/TStools")
Sometimes bioconductor also does the trick
source("https://bioconductor.org/biocLite.R")
biocLite("tstools")
Have you tried install.packages("tstools", dependencies = T) ?
RStudio is not letting me install any new packages. As an example, I attempted to install "rio" today and got the following message:
install.packages("rio")
Installing package into ‘C:/Users/kjl5444/Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘openxlsx’ is not available
There is a binary version available but the source version is later:
binary source needs_compilation
rio 0.4.0 0.5.5 FALSE
installing the source package ‘rio’
trying URL 'https://cran.rstudio.com/src/contrib/rio_0.5.5.tar.gz'
Content type 'application/x-gzip' length 390824 bytes (381 KB)
downloaded 381 KB
'C:\Program' is not recognized as an internal or external command,
operable program or batch file.
Warning in install.packages :
running command '"C:/Program Files/R/R-32~1.2/bin/x64/R" CMD INSTALL -l "C:\Users\kjl5444\Documents\R\win-library\3.2" C:\Users\kjl5444\AppData\Local\Temp\RtmpaQwlLL/downloaded_packages/rio_0.5.5.tar.gz' had status 1
Warning in install.packages :
installation of package ‘rio’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\kjl5444\AppData\Local\Temp\RtmpaQwlLL\downloaded_packages’
> library(rio)
Error in library(rio) : there is no package called ‘rio’
Any help on deciphering and fixing this error?
While trying to install the rio package in Microsoft windows. I faced an error. In order to resolve that issue, I googled and came to this page.
I know this post is a bit old post but thought to share it for those who face a similar issue in installing this package.
Similar to this post:
Error: "there is no package called ..." and trying to use install.packages to solve it
I could only install rio when I used the command:
install.packages('rio', dependencies = TRUE, repos='http://cran.rstudio.com/')
Perhaps it can help you successfully install the required packages as it ensures that dependencies are also installed along with the required package.
I try in R to install the CRAN-packages "rio" but receive the following error:
install.packages("rio", dependencies = TRUE)
Installing package into ‘C:/software/Rpackages’
(as ‘lib’ is unspecified)
also installing the dependency ‘feather’
There is a binary version available but the source
version is later:
binary source needs_compilation
rio 0.4.0 0.4.8 FALSE
Package which is only available in source form, and may
need compilation of C/C++/Fortran: ‘feather’
These will not be installed
installing the source package ‘rio’
trying URL 'https://cran.rstudio.com/src/contrib/rio_0.4.8.tar.gz'
Content type 'application/x-gzip' length 40366 bytes (39 KB)
downloaded 39 KB
ERROR: dependency 'feather' is not available for package 'rio'
* removing 'C:/software/Rpackages/rio'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-32~1.4RE/bin/x64/R" CMD INSTALL -l "C:\software\Rpackages" C:\Users\BJRNAU~1\AppData\Local\Temp\Rtmp6rf71B/downloaded_packages/rio_0.4.8.tar.gz' had status 1
Warning in install.packages :
installation of package ‘rio’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\BjørnAugust\AppData\Local\Temp\Rtmp6rf71B\downloaded_packages’
Can anyone help me install the packages?
This was an unintended consequence of importing feather in the latest release of rio. It will be correctly soon in the next release of rio to CRAN (v0.4.11), which should be available by 10 August 2016. In the meantime, you have a couple of options.
1) Install the development version from GitHub using something like:
devtools::install_github("leeper/rio")
# or
remotes::install_github("leeper/rio")
This version (v0.4.11) makes feather optional, so it is installable on older Windows versions.
2) Install an older version of rio:
packageurl <- "https://cran.r-project.org/src/contrib/Archive/rio/rio_0.4.6.tar.gz"
install.packages(packageurl, repos=NULL, type="source")
But note that this will potentially require manual install of package dependencies.
3) Upgrade to the latest version of R (v3.3.1) so that you can install feather (and thus rio).
I am unable to install ggplot2 in R 3.0.2 on Ubuntu.
When I run
install.packages('ggplot2',dependencies = TRUE)
I get the following error.
> install.packages('ggplot2',dependencies = TRUE)
Installing package into ‘/home/gowthamn/R/x86_64-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependencies ‘plyr’, ‘testthat’ are not available
also installing the dependencies ‘reshape2’, ‘scales’, ‘Hmisc’
trying URL 'http://cran.rstudio.com/src/contrib/reshape2_1.4.1.tar.gz'
Content type 'application/x-gzip' length 34693 bytes (33 Kb)
opened URL
==================================================
downloaded 33 Kb
trying URL 'http://cran.rstudio.com/src/contrib/scales_0.2.4.tar.gz'
Content type 'application/x-gzip' length 40093 bytes (39 Kb)
opened URL
==================================================
downloaded 39 Kb
trying URL 'http://cran.rstudio.com/src/contrib/Hmisc_3.16-0.tar.gz'
Content type 'application/x-gzip' length 629536 bytes (614 Kb)
opened URL
==================================================
downloaded 614 Kb
trying URL 'http://cran.rstudio.com/src/contrib/ggplot2_1.0.1.tar.gz'
Content type 'application/x-gzip' length 2351203 bytes (2.2 Mb)
opened URL
==================================================
downloaded 2.2 Mb
ERROR: dependency ‘plyr’ is not available for package ‘reshape2’
* removing ‘/home/gowthamn/R/x86_64-pc-linux-gnu-library/3.0/reshape2’
Warning in install.packages :
installation of package ‘reshape2’ had non-zero exit status
ERROR: dependency ‘plyr’ is not available for package ‘scales’
* removing ‘/home/gowthamn/R/x86_64-pc-linux-gnu-library/3.0/scales’
Warning in install.packages :
installation of package ‘scales’ had non-zero exit status
ERROR: dependencies ‘plyr’, ‘reshape2’, ‘scales’ are not available for package ‘ggplot2’
* removing ‘/home/gowthamn/R/x86_64-pc-linux-gnu-library/3.0/ggplot2’
Warning in install.packages :
installation of package ‘ggplot2’ had non-zero exit status
ERROR: dependencies ‘ggplot2’, ‘scales’ are not available for package ‘Hmisc’
* removing ‘/home/gowthamn/R/x86_64-pc-linux-gnu-library/3.0/Hmisc’
Warning in install.packages :
installation of package ‘Hmisc’ had non-zero exit status
I also tried
install.packages(c('reshape2','scales'))
Get the error that plyr is not available.
I also upgraded Ubuntu and also reinstalled latest version of R and updated the packages using update.packages(checkBuilt=TRUE).
But, nothing worked. What can I do?
If you do not need the latest version, you can install the packaged version distributed by Ubuntu by using:
sudo apt-get install r-cran-ggplot2
I fixed this problem by typing these command:
$ sudo apt-get install r-cran-plyr
$ sudo apt-get install r-cran-reshape2
You should update your R version (r-base) to the latest.
Command line like:
$ sudo apt-get update
$ sudo apt-get install r-base
updated didn't work for me.
First uninstall R.
Then download 3.2.1 deb file from the link:
http://cran.es.r-project.org/bin/linux/ubuntu/trusty/
Install it by Ubuntu software center.
Run install.packages as regular.
apt-get tracks what repos to look for packages in /etc/apt/sources.list. The default set defined in most people's sources.list does not include CRAN mirrors. For Ubuntu users, you can add the following line to /etc/apt/sources.list:
deb https://<my.favorite.cran.mirror>/bin/linux/ubuntu <linux ver>/
I use 'trusty' Ubuntu version and prefer the berkley cran mirror, so my line looks like:
deb http://cran.cnr.berkeley.edu/bin/linux/ubuntu trusty/
If you need to find out your Ubuntu version, try running:
lsb_release -a
Now apt-get can interact with a CRAN mirror for you. Enjoy!
Download the newest version of r-base (3.2.2) from [http://cran.es.r-project.org/bin/linux/ubuntu/trusty/]
use Ubuntu software Centre to open it and install.
This would update your already installed version to the latest. Then try installing the ggplot2 packgage again. It worked for me like magic.
Good luck with it!!
I followed the instructions on randyzwitch's blog (http://randyzwitch.com/r-amazon-ec2/) to install r-studio server on ec2 instance running ubuntu 12.04.
When I start r-studio server and try to install packages, this is what was happening:
> install.packages("dplyr")
Warning in install.packages :
package ‘dplyr’ is not available (for R version 2.14.1)
Installing package(s) into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
Warning in install.packages :
'lib = "/usr/local/lib/R/site-library"' is not writable
Would you like to create a personal library
~/R/x86_64-pc-linux-gnu-library/2.14
to install packages into? (y/n) y
Warning in install.packages :
package ‘dplyr’ is not available (for R version 2.14.1)
I realized I need to update R so I checked out this post and updated it: https://askubuntu.com/questions/218708/installing-latest-version-of-r-base/436491#436491
I am logged in as sudo user. When I try to install package now, i get this:
> install.packages("plyr")
Installing package into ‘/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.2’
(as ‘lib’ is unspecified)
also installing the dependency ‘Rcpp’
trying URL 'http://cran.rstudio.com/src/contrib/Rcpp_0.11.5.tar.gz'
Content type 'application/x-gzip' length 2353791 bytes (2.2 MB)
==================================================
downloaded 2.2 MB
trying URL 'http://cran.rstudio.com/src/contrib/plyr_1.8.2.tar.gz'
Content type 'application/x-gzip' length 392136 bytes (382 KB)
==================================================
downloaded 382 KB
Warning in install.packages :
system call failed: Cannot allocate memory
Warning in install.packages :
installation of package ‘Rcpp’ had non-zero exit status
Warning in install.packages :
system call failed: Cannot allocate memory
Warning in install.packages :
installation of package ‘plyr’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmp6Kgx5d/downloaded_packages’
I saw this post : lme4 package install failing on Ubuntu 12.04 and followed all instructions but it didn't solve the problem. Still same result. Thoroughly frustrated with trying to run rstudio server on aws. Someone please help!
Are you using the instance type t2.micro? Try using a more powerful instance with more RAM, that worked for me.
Please make sure you are root user when installing packages:
sudo su command will take you to root user. Then run your install package code.
or use sudo before run you script: sudo Rscript 1.R